Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MYT1L	23040	genome.wustl.edu	36	2	1905921	1905921	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	2	1905921	1905921	G	A	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	silent	c.627	p.G209	1.000	NULL	superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1	-	no_errors
TSC2	7249	genome.wustl.edu	36	16	2047110	2047110	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	16	2047110	2047110	A	G	SNP	TSC2	NM_000548	human	genbank	54_36p	+1	reviewed	missense	c.778	p.M260V	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	2807498	2807498	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	8	2807498	2807498	G	A	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	nonsense	c.9529	p.R3177*	0.943	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NUP98	4928	genome.wustl.edu	36	11	3738423	3738423	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	11	3738423	3738423	C	T	SNP	NUP98	NM_016320	human	genbank	54_36p	-1	reviewed	missense	c.1096	p.G366S	1.000	NULL	superfamily_SSF88633,HMMPfam_Nucleoporin2,superfamily_Peptidase_S59	-	no_errors
CXCL16	58191	genome.wustl.edu	36	17	4585337	4585337	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	17	4585337	4585337	G	C	SNP	CXCL16	NM_001100812	human	genbank	54_36p	-1	validated	missense	c.574	p.H192D	0.001	NULL	NULL	-	no_errors
EMG1	10436	genome.wustl.edu	36	12	6955213	6955213	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	12	6955213	6955213	A	C	SNP	EMG1	ENST00000261406	human	ensembl	54_36p	+1	known	missense	c.713	p.E238A	1.000	NULL	HMMPfam_EMG1	-	no_errors
A2M	2	genome.wustl.edu	36	12	9145376	9145376	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	12	9145376	9145376	G	A	SNP	A2M	NM_000014	human	genbank	54_36p	-1	reviewed	silent	c.1428	p.V476	0.087	HMMPfam_A2M_N_2	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors
P2RY11	5032	genome.wustl.edu	36	19	10085596	10085596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	19	10085596	10085596	C	T	SNP	P2RY11	NM_002566	human	genbank	54_36p	+1	reviewed	missense	c.307	p.R103C	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
EIF4G2	1982	genome.wustl.edu	36	11	10778677	10778677	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	11	10778677	10778677	C	G	SNP	EIF4G2	NM_001418	human	genbank	54_36p	-1	reviewed	missense	c.1738	p.E580Q	1.000	HMMPfam_MA3,HMMSmart_SM00544	superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,HMMSmart_SM00515,HMMPfam_W2	-	no_start_codon
SNORD3B-1	0	genome.wustl.edu	36	17	18905970	18905970	+	RNA	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	17	18905970	18905970	C	T	SNP	SNORD3B-1	ENST00000363359	human	ensembl	54_36p	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
SNORD3A	0	genome.wustl.edu	36	17	19031942	19031942	+	RNA	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	17	19031942	19031942	C	T	SNP	SNORD3A	ENST00000365494	human	ensembl	54_36p	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC727914	727914	genome.wustl.edu	36	15	19631108	19631108	+	RNA	SNP	T	T	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	15	19631108	19631108	T	A	SNP	LOC727914	XR_015142	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DSG4	147409	genome.wustl.edu	36	18	27240204	27240204	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	18	27240204	27240204	G	A	SNP	DSG4	NM_177986	human	genbank	54_36p	+1	validated	silent	c.1803	p.A601	0.086	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
KIAA0556	23247	genome.wustl.edu	36	16	27668532	27668532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	16	27668532	27668532	C	T	SNP	KIAA0556	NM_015202	human	genbank	54_36p	+1	validated	missense	c.2750	p.T917M	1.000	NULL	superfamily_Galactose-binding domain-like,PatternScan_AKH	-	no_errors
KIF13B	23303	genome.wustl.edu	36	8	29060931	29060931	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	8	29060931	29060931	G	A	SNP	KIF13B	NM_015254	human	genbank	54_36p	-1	validated	missense	c.1921	p.R641W	0.896	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
SLC5A2	6524	genome.wustl.edu	36	16	31406867	31406867	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	16	31406867	31406867	T	C	SNP	SLC5A2	NM_003041	human	genbank	54_36p	+1	validated	missense	c.893	p.V298A	1.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
C12orf35	55196	genome.wustl.edu	36	12	32025660	32025660	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	12	32025660	32025660	G	C	SNP	C12orf35	NM_018169	human	genbank	54_36p	+1	validated	missense	c.504	p.M168I	0.001	NULL	NULL	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32278063	32278063	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	6	32278063	32278063	C	T	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	missense	c.3523	p.A1175T	0.003	superfamily_EGF/Laminin,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
TAF1L	138474	genome.wustl.edu	36	9	32624143	32624143	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	9	32624143	32624143	C	T	SNP	TAF1L	NM_153809	human	genbank	54_36p	-1	provisional	missense	c.1435	p.D479N	0.998	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
MGAT3	4248	genome.wustl.edu	36	22	38214126	38214126	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	22	38214126	38214126	C	A	SNP	MGAT3	NM_001098270	human	genbank	54_36p	+1	reviewed	missense	c.828	p.H276Q	1.000	HMMPfam_Glyco_transf_17	HMMPfam_Glyco_transf_17	-	no_errors
SCN10A	6336	genome.wustl.edu	36	3	38810281	38810281	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	3	38810281	38810281	G	A	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	silent	c.225	p.I75	0.084	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors
KLB	152831	genome.wustl.edu	36	4	39126506	39126506	+	Silent	SNP	A	G	G	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	4	39126506	39126506	A	G	SNP	KLB	NM_175737	human	genbank	54_36p	+1	validated	silent	c.2940	p.Q980	0.000	superfamily_Glyco_hydro_cat	PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2,HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	-	no_errors
MACF1	23499	genome.wustl.edu	36	1	39666333	39666333	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	1	39666333	39666333	G	C	SNP	MACF1	NM_033044	human	genbank	54_36p	+1	reviewed	missense	c.11910	p.K3970N	0.995	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors
ZSWIM1	90204	genome.wustl.edu	36	20	43945056	43945056	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	20	43945056	43945056	G	C	SNP	ZSWIM1	NM_080603	human	genbank	54_36p	+1	provisional	missense	c.418	p.E140Q	0.941	NULL	HMMPfam_SWIM	-	no_errors
PRKCE	5581	genome.wustl.edu	36	2	46060955	46060955	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	2	46060955	46060955	C	T	SNP	PRKCE	NM_005400	human	genbank	54_36p	+1	reviewed	silent	c.624	p.V208	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
RB1	5925	genome.wustl.edu	36	13	47853569	47853569	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	13	47853569	47853569	G	C	SNP	RB1	NM_000321	human	genbank	54_36p	+1	reviewed	missense	c.1684	p.A562P	1.000	HMMPfam_RB_A,superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors
CRISP2	7180	genome.wustl.edu	36	6	49774114	49774114	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	6	49774114	49774114	T	G	SNP	CRISP2	NM_003296	human	genbank	54_36p	-1	validated	missense	c.337	p.S113R	0.992	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,PatternScan_CRISP_1,PatternScan_CRISP_2,HMMPfam_Crisp	-	no_errors
RSHL1	81492	genome.wustl.edu	36	19	50999774	50999774	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	19	50999774	50999774	G	A	SNP	RSHL1	NM_030785	human	genbank	54_36p	-1	reviewed	missense	c.1229	p.P410L	1.000	HMMPfam_Radial_spoke	HMMPfam_Radial_spoke	-	no_errors
KRT6A	3853	genome.wustl.edu	36	12	51167967	51167967	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	12	51167967	51167967	G	T	SNP	KRT6A	NM_005554	human	genbank	54_36p	-1	reviewed	missense	c.1499	p.A500D	0.149	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
PSME4	23198	genome.wustl.edu	36	2	53982141	53982141	+	Silent	SNP	A	A	G	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	2	53982141	53982141	A	G	SNP	PSME4	NM_014614	human	genbank	54_36p	-1	validated	silent	c.2793	p.D931	0.996	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
PTOV1	53635	genome.wustl.edu	36	19	55055089	55055089	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	19	55055089	55055089	G	T	SNP	PTOV1	NM_017432	human	genbank	54_36p	+1	provisional	missense	c.1076	p.C359F	0.997	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
OR8K5	219453	genome.wustl.edu	36	11	55683539	55683539	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	11	55683539	55683539	A	C	SNP	OR8K5	NM_001004058	human	genbank	54_36p	-1	validated	missense	c.831	p.F277L	0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SIGLEC14	0	genome.wustl.edu	36	19	56841404	56841404	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	19	56841404	56841404	C	T	SNP	SIGLEC14	NM_001098612	human	genbank	54_36p	-1	validated	silent	c.339	p.T113	0.000	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,PatternScan_IG_MHC	-	no_errors
LAMA5	3911	genome.wustl.edu	36	20	60317822	60317822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	20	60317822	60317822	C	T	SNP	LAMA5	NM_005560	human	genbank	54_36p	-1	reviewed	missense	c.11053	p.G3685R	0.989	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
TLN2	83660	genome.wustl.edu	36	15	60899860	60899860	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	15	60899860	60899860	A	G	SNP	TLN2	NM_015059	human	genbank	54_36p	+1	reviewed	missense	c.7000	p.K2334E	1.000	superfamily_SSF109885	PatternScan_FERM_1,HMMSmart_B41,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors
PRIC285	85441	genome.wustl.edu	36	20	61667535	61667535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	20	61667535	61667535	G	A	SNP	PRIC285	NM_001037335	human	genbank	54_36p	-1	reviewed	silent	c.3084	p.D1028	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	no_errors
ASL	435	genome.wustl.edu	36	7	65195004	65195004	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	7	65195004	65195004	C	G	SNP	ASL	NM_000048	human	genbank	54_36p	+1	reviewed	missense	c.1169	p.A390G	0.900	superfamily_L-Aspartase-like	HMMPfam_Lyase_1,superfamily_L-Aspartase-like,PatternScan_FUMARATE_LYASES	-	no_errors
MAST4	23227	genome.wustl.edu	36	5	66492098	66492098	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	5	66492098	66492098	G	T	SNP	MAST4	NM_015183	human	genbank	54_36p	+1	validated	missense	c.3140	p.G1047V	1.000	superfamily_PDZ	HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
COL19A1	1310	genome.wustl.edu	36	6	70910875	70910875	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	6	70910875	70910875	A	T	SNP	COL19A1	NM_001858	human	genbank	54_36p	+1	reviewed	missense	c.1679	p.K560M	1.000	HMMPfam_Collagen	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors
ZNF516	9658	genome.wustl.edu	36	18	72220983	72220983	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	18	72220983	72220983	T	C	SNP	ZNF516	ENST00000217537	human	ensembl	54_36p	-1	known	missense	c.2075	p.E692G	0.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZFYVE1	53349	genome.wustl.edu	36	14	72510568	72510568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	14	72510568	72510568	C	T	SNP	ZFYVE1	NM_021260	human	genbank	54_36p	-1	reviewed	missense	c.2074	p.V692M	0.994	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE	-	no_errors
LOC728748	728748	genome.wustl.edu	36	X	73535548	73535548	+	RNA	SNP	T	T	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	X	73535548	73535548	T	C	SNP	LOC728748	XR_037583	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.637	-	-	-	pseudogene
LOXL3	84695	genome.wustl.edu	36	2	74616267	74616267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	2	74616267	74616267	C	T	SNP	LOXL3	NM_032603	human	genbank	54_36p	-1	reviewed	missense	c.1372	p.A458T	1.000	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors
VAT1L	57687	genome.wustl.edu	36	16	76569061	76569061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	16	76569061	76569061	G	A	SNP	VAT1L	NM_020927	human	genbank	54_36p	+1	provisional	missense	c.1228	p.E410K	1.000	NULL	superfamily_GroES_like,HMMPfam_ADH_N,superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N,PatternScan_QOR_ZETA_CRYSTAL	-	no_errors
C10orf58	84293	genome.wustl.edu	36	10	82177120	82177120	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	10	82177120	82177120	G	A	SNP	C10orf58	NM_032333	human	genbank	54_36p	+1	validated	missense	c.464	p.R155H	0.992	NULL	superfamily_Thiordxn-like_fd	-	no_errors
LOC645961	0	genome.wustl.edu	36	9	89936971	89936971	+	RNA	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	9	89936971	89936971	C	T	SNP	LOC645961	XR_040572	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.052	-	-	-	no_errors
TMEFF1	8577	genome.wustl.edu	36	9	102374728	102374728	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	9	102374728	102374728	T	C	SNP	TMEFF1	NM_003692	human	genbank	54_36p	+1	validated	missense	c.1007	p.I336T	1.000	NULL	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
IRS4	8471	genome.wustl.edu	36	X	107863872	107863872	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	X	107863872	107863872	C	T	SNP	IRS4	NM_003604	human	genbank	54_36p	-1	reviewed	missense	c.2359	p.G787S	0.992	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors
RANBP2	5903	genome.wustl.edu	36	2	108734495	108734495	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	2	108734495	108734495	C	T	SNP	RANBP2	NM_006267	human	genbank	54_36p	+1	reviewed	missense	c.1535	p.P512L	0.962	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
LOC100128588	0	genome.wustl.edu	36	6	112754054	112754054	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	6	112754054	112754054	G	C	SNP	LOC100128588	XM_001723020	human	genbank	54_36p	-1	model	missense	c.545	p.A182G	0.001	NULL	HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
ANK2	287	genome.wustl.edu	36	4	114473796	114473796	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	4	114473796	114473796	T	C	SNP	ANK2	NM_001148	human	genbank	54_36p	+1	reviewed	missense	c.3362	p.L1121P	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
FLJ30428	150519	genome.wustl.edu	36	2	131777147	131777147	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	2	131777147	131777147	G	T	SNP	FLJ30428	XM_001723916	human	genbank	54_36p	+1	model	nonsense	c.154	p.G52*	0.999	NULL	NULL	-	no_errors
TAAR9	134860	genome.wustl.edu	36	6	132902076	132902076	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	6	132902076	132902076	G	C	SNP	TAAR9	NM_175057	human	genbank	54_36p	+1	reviewed	missense	c.955	p.G319R	0.879	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	pseudogene
DUX1	26584	genome.wustl.edu	36	10	135341031	135341031	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	10	135341031	135341031	C	A	SNP	DUX1	NM_012146	human	genbank	54_36p	+1	provisional	missense	c.469	p.P157T	0.996	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_stop_codon
NOBOX	135935	genome.wustl.edu	36	7	143732630	143732630	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	7	143732630	143732630	G	A	SNP	NOBOX	NM_001080413	human	genbank	54_36p	-1	provisional	silent	c.162	p.S54	0.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154770217	154770217	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	1	154770217	154770217	C	T	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	silent	c.3948	p.G1316	0.991	superfamily_Rho_GAP,HMMSmart_RasGAP	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156899134	156899134	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	1	156899134	156899134	C	T	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.2446	p.A816T	0.976	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors
USP13	8975	genome.wustl.edu	36	3	180853744	180853744	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	3	180853744	180853744	G	A	SNP	USP13	NM_003940	human	genbank	54_36p	+1	validated	missense	c.37	p.G13S	1.000	NULL	HMMSmart_ZnF_UBP,HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_UBA,HMMSmart_UBA,superfamily_UBA_like,PatternScan_UCH_2_2	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184306510	184306510	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	1	184306510	184306510	C	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	missense	c.8137	p.Q2713K	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors
CFH	3075	genome.wustl.edu	36	1	194920837	194920837	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	1	194920837	194920837	T	C	SNP	CFH	NM_000186	human	genbank	54_36p	+1	reviewed	missense	c.811	p.Y271H	0.023	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92174136	92174136	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	11	92174136	92174136	G	-	DEL	FAT3	NM_001008781	human	genbank	54_36p	+1	validated	frame_shift_del	c.8309	p.R2770fs	0.993	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	(deletion:cds_exon[92170650,92174723])	no_errors
USH2A	7399	genome.wustl.edu	36	1	213915057	213915058	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-04-1638-01A-01W-0639-09	TCGA-04-1638-11A-01W-0639-09	AT	AT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e987ddbb-58d8-4346-b91a-c733fdf8e585	489ca7cf-fb85-418d-8025-90afc71936d7	1	213915057	213915058	AT	-	DEL	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.12819_12818	p.Y4273fs	0.000:0.002	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	(deletion:cds_exon[213914065,213915581])	no_errors
