Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
KIAA0020	9933	genome.wustl.edu	36	9	2828437	2828437	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	9	2828437	2828437	T	A	SNP	KIAA0020	NM_014878	human	genbank	54_36p	-1	validated	missense	c.71	p.H24L	0.635	NULL	superfamily_ARM repeat,HMMSmart_SM00025,HMMPfam_CPL	-	no_errors
KCNA6	3742	genome.wustl.edu	36	12	4790923	4790923	+	Silent	SNP	T	T	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	12	4790923	4790923	T	A	SNP	KCNA6	NM_002235	human	genbank	54_36p	+1	reviewed	silent	c.1455	p.P485	0.000	NULL	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517854	7517854	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	17	7517854	7517854	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.809	p.F270S	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TARDBP	23435	genome.wustl.edu	36	1	11001443	11001443	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	1	11001443	11001443	A	G	SNP	TARDBP	NM_007375	human	genbank	54_36p	+1	reviewed	missense	c.469	p.T157A	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
ZNF653	115950	genome.wustl.edu	36	19	11459600	11459600	+	Silent	SNP	C	T	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	19	11459600	11459600	C	T	SNP	ZNF653	NM_138783	human	genbank	54_36p	-1	provisional	silent	c.678	p.T226	0.014	NULL	HMMSmart_AT_hook,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11589093	11589093	+	Silent	SNP	G	G	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	17	11589093	11589093	G	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	+1	reviewed	silent	c.6366	p.L2122	0.997	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
TSSK6	83983	genome.wustl.edu	36	19	19487179	19487179	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	19	19487179	19487179	C	T	SNP	TSSK6	NM_032037	human	genbank	54_36p	-1	validated	missense	c.58	p.E20K	0.972	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZNF280B	140883	genome.wustl.edu	36	22	21173283	21173283	+	Silent	SNP	T	T	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	22	21173283	21173283	T	C	SNP	ZNF280B	NM_080764	human	genbank	54_36p	-1	reviewed	silent	c.441	p.T147	0.000	NULL	HMMSmart_SM00355,superfamily_RING/U-box,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
KIAA0528	9847	genome.wustl.edu	36	12	22522562	22522562	+	Silent	SNP	T	T	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	12	22522562	22522562	T	G	SNP	KIAA0528	NM_014802	human	genbank	54_36p	-1	predicted	silent	c.1854	p.I618	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
ATAD2B	54454	genome.wustl.edu	36	2	23831028	23831028	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	23831028	23831028	C	G	SNP	ATAD2B	NM_017552	human	genbank	54_36p	-1	validated	missense	c.4199	p.R1400T	0.999	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
SLC6A4	6532	genome.wustl.edu	36	17	25568447	25568447	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	17	25568447	25568447	G	A	SNP	SLC6A4	NM_001045	human	genbank	54_36p	-1	reviewed	missense	c.700	p.R234C	1.000	HMMPfam_SNF	HMMPfam_5HT_transporter,HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
IFLTD1	160492	genome.wustl.edu	36	12	25570398	25570398	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	12	25570398	25570398	C	T	SNP	IFLTD1	NM_152590	human	genbank	54_36p	-1	validated	missense	c.637	p.A213T	0.007	superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail	superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail	-	no_errors
PPP2R2A	5520	genome.wustl.edu	36	8	26267949	26267949	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	8	26267949	26267949	T	C	SNP	PPP2R2A	NM_002717	human	genbank	54_36p	+1	reviewed	missense	c.229	p.F77L	1.000	superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2	-	no_errors
WRN	7486	genome.wustl.edu	36	8	31118621	31118621	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	8	31118621	31118621	A	T	SNP	WRN	NM_000553	human	genbank	54_36p	+1	reviewed	missense	c.3101	p.Y1034F	0.000	HMMPfam_RQC	HMMSmart_SM00474,HMMPfam_3_5_exonuc,superfamily_Ribonuclease H-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_RQC,HMMSmart_SM00341,HMMPfam_HRDC	-	no_errors
LOC644384	644384	genome.wustl.edu	36	14	34025060	34025060	+	RNA	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	14	34025060	34025060	G	A	SNP	LOC644384	XR_017413	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.980	-	-	-	pseudogene
MED24	9862	genome.wustl.edu	36	17	35439638	35439638	+	Silent	SNP	G	G	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	17	35439638	35439638	G	T	SNP	MED24	NM_014815	human	genbank	54_36p	-1	reviewed	silent	c.1155	p.R385	0.099	NULL	NULL	-	no_errors
GGA1	26088	genome.wustl.edu	36	22	36350940	36350940	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	22	36350940	36350940	A	G	SNP	GGA1	NM_013365	human	genbank	54_36p	+1	reviewed	missense	c.851	p.N284S	1.000	superfamily_GAT-like domain,HMMPfam_GAT	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,superfamily_GAT-like domain,HMMPfam_GAT,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809	-	no_errors
DSCAM	1826	genome.wustl.edu	36	21	40379509	40379509	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	21	40379509	40379509	T	C	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	missense	c.4022	p.N1341S	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
KRTDAP	388533	genome.wustl.edu	36	19	40673177	40673177	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	19	40673177	40673177	A	T	SNP	KRTDAP	NM_207392	human	genbank	54_36p	-1	provisional	missense	c.8	p.I3N	0.995	NULL	NULL	-	no_errors
CYP2D6	1565	genome.wustl.edu	36	22	40854746	40854746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	22	40854746	40854746	G	A	SNP	CYP2D6	NM_000106	human	genbank	54_36p	-1	reviewed	missense	c.650	p.S217L	0.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
NFYC	4802	genome.wustl.edu	36	1	40996518	40996518	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	1	40996518	40996518	G	T	SNP	NFYC	NM_014223	human	genbank	54_36p	+1	reviewed	missense	c.526	p.G176W	1.000	NULL	superfamily_Histone-fold,HMMPfam_CBFD_NFYB_HMF	-	no_errors
STRC	161497	genome.wustl.edu	36	15	41688790	41688790	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	15	41688790	41688790	G	T	SNP	STRC	NM_153700	human	genbank	54_36p	-1	reviewed	missense	c.3533	p.T1178N	1.000	NULL	NULL	-	no_errors
GRAMD4	23151	genome.wustl.edu	36	22	45443253	45443253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	22	45443253	45443253	C	T	SNP	GRAMD4	NM_015124	human	genbank	54_36p	+1	validated	missense	c.934	p.L312F	1.000	NULL	HMMPfam_GRAM,HMMSmart_SM00568	-	no_errors
DCC	1630	genome.wustl.edu	36	18	48532718	48532718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	18	48532718	48532718	C	T	SNP	DCC	NM_005215	human	genbank	54_36p	+1	validated	missense	c.388	p.R130W	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors
KLRAQ1	129285	genome.wustl.edu	36	2	48576372	48576372	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	48576372	48576372	C	T	SNP	KLRAQ1	NM_152994	human	genbank	54_36p	+1	validated	silent	c.1650	p.I550	0.997	HMMPfam_TTKRSYEDQ	HMMPfam_KLRAQ,HMMPfam_TTKRSYEDQ	-	no_errors
MAGED1	9500	genome.wustl.edu	36	X	51654506	51654506	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	X	51654506	51654506	C	A	SNP	MAGED1	NM_001005333	human	genbank	54_36p	+1	reviewed	missense	c.89	p.P30H	0.230	NULL	HMMPfam_MAGE	-	no_errors
DKFZp564N2472	285877	genome.wustl.edu	36	7	53071284	53071284	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	7	53071284	53071284	G	A	SNP	DKFZp564N2472	NM_182595	human	genbank	54_36p	+1	validated	silent	c.426	p.A142	0.003	NULL	NULL	-	no_errors
CSH2	1443	genome.wustl.edu	36	17	59303397	59303397	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	17	59303397	59303397	G	A	SNP	CSH2	NM_020991	human	genbank	54_36p	-1	reviewed	missense	c.475	p.R159C	0.907	HMMPfam_Hormone_1,superfamily_4-helical cytokines	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_1,PatternScan_SOMATOTROPIN_2	-	no_errors
SERPINB3	6317	genome.wustl.edu	36	18	59476731	59476731	+	Silent	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	18	59476731	59476731	C	A	SNP	SERPINB3	NM_006919	human	genbank	54_36p	-1	validated	silent	c.465	p.T155	0.870	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors
ZNF735	728898	genome.wustl.edu	36	7	63175838	63175838	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	7	63175838	63175838	G	T	SNP	ZNF735	ENST00000398732	human	ensembl	54_36p	+1	known	missense	c.904	p.A302S	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_stop_codon
ADAMTS9	56999	genome.wustl.edu	36	3	64619317	64619317	+	Silent	SNP	G	G	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	3	64619317	64619317	G	C	SNP	ADAMTS9	NM_182920	human	genbank	54_36p	-1	reviewed	silent	c.870	p.S290	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
NETO1	81832	genome.wustl.edu	36	18	68568805	68568805	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	18	68568805	68568805	A	C	SNP	NETO1	NM_138966	human	genbank	54_36p	-1	reviewed	missense	c.1013	p.L338R	1.000	superfamily_LDL receptor-like module	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
NETO1	81832	genome.wustl.edu	36	18	68602053	68602053	+	Silent	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	18	68602053	68602053	C	A	SNP	NETO1	NM_138966	human	genbank	54_36p	-1	reviewed	silent	c.708	p.V236	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
CXCR3	2833	genome.wustl.edu	36	X	70753170	70753170	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	X	70753170	70753170	C	A	SNP	CXCR3	NM_001504	human	genbank	54_36p	-1	reviewed	nonsense	c.877	p.E293*	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SALL3	27164	genome.wustl.edu	36	18	74858261	74858261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	18	74858261	74858261	G	A	SNP	SALL3	NM_171999	human	genbank	54_36p	+1	validated	missense	c.3854	p.R1285H	0.939	NULL	HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
KIAA1303	57521	genome.wustl.edu	36	17	76551330	76551330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	17	76551330	76551330	G	A	SNP	KIAA1303	NM_020761	human	genbank	54_36p	+1	validated	missense	c.3817	p.V1273I	0.998	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
IREB2	3658	genome.wustl.edu	36	15	76562805	76562805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	15	76562805	76562805	G	A	SNP	IREB2	NM_004136	human	genbank	54_36p	+1	validated	missense	c.1387	p.D463N	1.000	superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase	superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase,HMMPfam_Aconitase_C	-	no_errors
IFI44L	10964	genome.wustl.edu	36	1	78867243	78867243	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	1	78867243	78867243	C	G	SNP	IFI44L	NM_006820	human	genbank	54_36p	+1	validated	missense	c.381	p.D127E	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC642546	0	genome.wustl.edu	36	X	79716977	79716977	+	RNA	SNP	A	A	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	X	79716977	79716977	A	T	SNP	LOC642546	XR_038841	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.041	-	-	-	pseudogene
CLCA4	22802	genome.wustl.edu	36	1	86818288	86818288	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	1	86818288	86818288	A	G	SNP	CLCA4	NM_012128	human	genbank	54_36p	+1	reviewed	missense	c.2432	p.N811S	0.996	NULL	HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973	-	no_errors
UBTFL2	120126	genome.wustl.edu	36	11	89125861	89125861	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	11	89125861	89125861	T	G	SNP	UBTFL2	NM_001101321	human	genbank	54_36p	-1	provisional	missense	c.922	p.K308Q	0.003	superfamily_HMG-box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
VPS33B	26276	genome.wustl.edu	36	15	89352178	89352178	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	15	89352178	89352178	C	A	SNP	VPS33B	NM_018668	human	genbank	54_36p	-1	reviewed	missense	c.424	p.A142S	1.000	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	-	no_errors
NECAB1	64168	genome.wustl.edu	36	8	91883110	91883110	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	8	91883110	91883110	G	A	SNP	NECAB1	NM_022351	human	genbank	54_36p	+1	validated	missense	c.115	p.D39N	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Dimeric alpha beta barrel,HMMPfam_ABM	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106693050	106693050	+	Silent	SNP	T	T	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	X	106693050	106693050	T	A	SNP	FRMPD3	XM_042978	human	genbank	54_36p	+1	model	silent	c.1179	p.P393	0.988	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108116413	108116413	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	13	108116413	108116413	G	C	SNP	MYO16	NM_015011	human	genbank	54_36p	+1	validated	missense	c.141	p.R47S	0.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
TDRD1	56165	genome.wustl.edu	36	10	115968318	115968318	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	10	115968318	115968318	C	T	SNP	TDRD1	NM_198795	human	genbank	54_36p	+1	reviewed	missense	c.2479	p.R827W	0.935	HMMPfam_TUDOR	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_TUDOR,superfamily_SSF63748,HMMSmart_TUDOR	-	no_errors
SPRY1	10252	genome.wustl.edu	36	4	124542774	124542774	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	4	124542774	124542774	C	A	SNP	SPRY1	NM_005841	human	genbank	54_36p	+1	validated	missense	c.578	p.T193N	0.997	HMMPfam_Sprouty	HMMPfam_Sprouty	-	no_errors
RIMBP2	23504	genome.wustl.edu	36	12	129492840	129492840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	12	129492840	129492840	G	A	SNP	RIMBP2	NM_015347	human	genbank	54_36p	-1	validated	missense	c.959	p.P320L	1.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-	no_errors
ZFAT	57623	genome.wustl.edu	36	8	135665346	135665346	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	8	135665346	135665346	G	C	SNP	ZFAT	NM_020863	human	genbank	54_36p	-1	validated	missense	c.2798	p.T933S	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
LOC441294	441294	genome.wustl.edu	36	7	142980485	142980485	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	7	142980485	142980485	C	G	SNP	LOC441294	NM_001008747	human	genbank	54_36p	+1	predicted	missense	c.1453	p.H485D	0.985	NULL	NULL	-	no_errors
FAM115A	9747	genome.wustl.edu	36	7	143186870	143186870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	7	143186870	143186870	C	T	SNP	FAM115A	NM_014719	human	genbank	54_36p	-1	predicted	missense	c.2485	p.A829T	0.927	NULL	NULL	-	no_errors
NUDT17	200035	genome.wustl.edu	36	1	144298810	144298810	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	1	144298810	144298810	G	A	SNP	NUDT17	NM_001012758	human	genbank	54_36p	-1	validated	silent	c.627	p.S209	0.558	superfamily_NUDIX_hydrolase,HMMPfam_NUDIX	PatternScan_NUDIX,superfamily_NUDIX_hydrolase,HMMPfam_NUDIX	-	no_errors
SLC36A2	153201	genome.wustl.edu	36	5	150692983	150692983	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	5	150692983	150692983	C	G	SNP	SLC36A2	NM_181776	human	genbank	54_36p	-1	validated	missense	c.838	p.G280R	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
LOC344332	344332	genome.wustl.edu	36	2	151751083	151751083	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	151751083	151751083	T	C	SNP	LOC344332	XM_001125944	human	genbank	54_36p	+1	model	missense	c.428	p.I143T	0.693	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP	-	pseudogene
SYNE1	23345	genome.wustl.edu	36	6	152812371	152812371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	6	152812371	152812371	C	T	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.3494	p.R1165H	0.000	superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157080721	157080721	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	7	157080721	157080721	C	T	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	silent	c.2466	p.P822	0.949	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PNLDC1	154197	genome.wustl.edu	36	6	160159992	160159992	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	6	160159992	160159992	A	T	SNP	PNLDC1	NM_173516	human	genbank	54_36p	+1	provisional	missense	c.1249	p.S417C	0.018	NULL	superfamily_Ribonuclease H-like,HMMPfam_CAF1	-	no_errors
OTOL1	131149	genome.wustl.edu	36	3	162703946	162703946	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	3	162703946	162703946	G	A	SNP	OTOL1	NM_001080440	human	genbank	54_36p	+1	predicted	missense	c.956	p.R319Q	0.976	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors
XIRP2	129446	genome.wustl.edu	36	2	167811253	167811253	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	167811253	167811253	C	A	SNP	XIRP2	NM_152381	human	genbank	54_36p	+1	validated	missense	c.5105	p.T1702K	0.000	NULL	HMMPfam_Xin	-	no_errors
SMOC2	64094	genome.wustl.edu	36	6	168692688	168692688	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	6	168692688	168692688	C	A	SNP	SMOC2	NM_022138	human	genbank	54_36p	+1	provisional	missense	c.626	p.T209N	0.997	superfamily_Thyroglobulin_1	superfamily_Thyroglobulin_1,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg	-	no_errors
DOK3	79930	genome.wustl.edu	36	5	176869244	176869244	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	5	176869244	176869244	C	T	SNP	DOK3	NM_024872	human	genbank	54_36p	-1	validated	silent	c.72	p.T24	0.997	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_IRS,HMMSmart_SM00310	-	no_errors
CALCRL	10203	genome.wustl.edu	36	2	187919292	187919292	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	187919292	187919292	C	T	SNP	CALCRL	NM_005795	human	genbank	54_36p	-1	validated	missense	c.1250	p.R417H	1.000	NULL	superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
COL5A2	1290	genome.wustl.edu	36	2	189609630	189609630	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	189609630	189609630	T	C	SNP	COL5A2	NM_000393	human	genbank	54_36p	-1	reviewed	missense	c.4070	p.N1357S	0.355	HMMSmart_COLFI,HMMPfam_COLFI	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
CTDSP1	58190	genome.wustl.edu	36	2	218977350	218977350	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	218977350	218977350	C	T	SNP	CTDSP1	NM_021198	human	genbank	54_36p	+1	provisional	silent	c.744	p.D248	0.994	superfamily_SSF56784,HMMPfam_NIF	superfamily_SSF56784,HMMPfam_NIF,HMMSmart_CPDc	-	no_errors
MIA3	375056	genome.wustl.edu	36	1	220894353	220894353	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	1	220894353	220894353	G	C	SNP	MIA3	NM_198551	human	genbank	54_36p	+1	validated	splice_site	c.4378-1	e17-1	0.998	-	-	-	no_errors
C1orf131	128061	genome.wustl.edu	36	1	229431545	229431545	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	1	229431545	229431545	C	G	SNP	C1orf131	NM_152379	human	genbank	54_36p	-1	validated	missense	c.484	p.D162H	0.208	NULL	NULL	-	no_errors
C2orf71	388939	genome.wustl.edu	36	2	29141430	29141431	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	29141430	29141431	-	GCT	INS	C2orf71	NM_001029883	human	genbank	54_36p	-1	predicted	in_frame_ins	c.3676_3675	p.1225in_frame_insS	0.882:0.718	NULL	NULL	-	no_errors
AQP7P1	375719	genome.wustl.edu	36	9	66963903	66963903	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	9	66963903	66963903	A	-	DEL	AQP7P1	ENST00000334576	human	ensembl	54_36p	-1	known	frame_shift_del	c.204	p.F68fs	0.003	HMMPfam_MIP,superfamily_Aquaporin-like	HMMPfam_MIP,superfamily_Aquaporin-like	(deletion:cds_exon[66963827,66963950])	no_errors
BRS3	680	genome.wustl.edu	36	X	135400219	135400231	+	Frame_Shift_Del	DEL	TATCTCTGTCTAC	TATCTCTGTCTAC	-	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	TATCTCTGTCTAC	TATCTCTGTCTAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	X	135400219	135400231	TATCTCTGTCTAC	-	DEL	BRS3	NM_001727	human	genbank	54_36p	+1	validated	frame_shift_del	c.696_708	p.S234fs	0.926:0.999:1.000:0.983:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[135399958,135400309])	no_errors
ENSG00000208440	0	genome.wustl.edu	36	6	158053062	158053063	+	RNA	INS	-	-	T	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	6	158053062	158053063	-	T	INS	ENSG00000208440	ENST00000385705	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	1.000:0.998	-	-	-	pseudogene
LOC100130761	0	genome.wustl.edu	36	2	161998991	161998992	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-04-1649-01A-01W-0639-09	TCGA-04-1649-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ab9bede5-6431-4925-b8be-6b4df83da63c	4930f91f-f807-4732-b60b-79bac1cca04c	2	161998991	161998992	-	CA	INS	LOC100130761	XM_001720141	human	genbank	54_36p	+1	model	frame_shift_ins	c.173_174	p.T62fs	0.000:0.001	NULL	NULL	-	no_errors
