Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ENSG00000210082	0	genome.wustl.edu	36	MT	2708	2708	+	RNA	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	2708	2708	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	54_36p	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
MT-CO1	4512	genome.wustl.edu	36	MT	6777	6777	+	Silent	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	6777	6777	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	silent	c.873	p.H291	NULL	superfamily_Cytochrome c oxidase subunit I-like,HMMPfam_COX1,PatternScan_COX1_CUB	superfamily_Cytochrome c oxidase subunit I-like,HMMPfam_COX1,PatternScan_COX1_CUB	-	no_stop_codon
MT-CO1	4512	genome.wustl.edu	36	MT	7029	7029	+	Silent	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	7029	7029	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	silent	c.1125	p.A375	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	no_stop_codon
MT-CO3	4514	genome.wustl.edu	36	MT	9707	9707	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	9707	9707	T	C	SNP	MT-CO3	ENST00000362079	human	ensembl	54_36p	+1	known	missense	c.500	p.I167T	NULL	superfamily_CytC_oxdse_III,HMMPfam_COX3	superfamily_CytC_oxdse_III,HMMPfam_COX3	-	no_stop_codon:bad_bp_length_for_coding_region
MT-ND4	4538	genome.wustl.edu	36	MT	11720	11720	+	Silent	SNP	A	A	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	11720	11720	A	G	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	silent	c.960	p.G320	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
MT-ND5	4540	genome.wustl.edu	36	MT	13405	13405	+	Silent	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	13405	13405	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	silent	c.1068	p.I356	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
MT-ND5	4540	genome.wustl.edu	36	MT	14126	14126	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	14126	14126	C	T	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	silent	c.1789	p.L597	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
MT-CYB	4519	genome.wustl.edu	36	MT	14767	14767	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	MT	14767	14767	T	C	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.20	p.I7T	NULL	superfamily_Transmembr_di-haem_cytochrome	superfamily_Transmembr_di-haem_cytochrome,HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	-	no_stop_codon:bad_bp_length_for_coding_region
CLCN7	1186	genome.wustl.edu	36	16	1447738	1447738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	16	1447738	1447738	G	A	SNP	CLCN7	NM_001287	human	genbank	54_36p	-1	reviewed	silent	c.696	p.S232	0.344	superfamily_Cl-channel_core,HMMPfam_Voltage_CLC	superfamily_Cl-channel_core,HMMPfam_Voltage_CLC,HMMPfam_CBS,HMMSmart_CBS,superfamily_SSF54631	-	no_errors
MYOM2	9172	genome.wustl.edu	36	8	1987747	1987747	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	8	1987747	1987747	T	A	SNP	MYOM2	NM_003970	human	genbank	54_36p	+1	validated	missense	c.172	p.S58T	0.109	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
C20orf194	25943	genome.wustl.edu	36	20	3277236	3277236	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	20	3277236	3277236	A	C	SNP	C20orf194	NM_001009984	human	genbank	54_36p	-1	validated	missense	c.725	p.F242C	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ADCY9	115	genome.wustl.edu	36	16	4104239	4104239	+	Silent	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	16	4104239	4104239	G	C	SNP	ADCY9	NM_001116	human	genbank	54_36p	-1	reviewed	silent	c.1206	p.G402	0.994	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514725	7514725	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	17	7514725	7514725	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.1027	p.E343*	0.805	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
GRM7	2917	genome.wustl.edu	36	3	7595823	7595823	+	Silent	SNP	A	A	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	3	7595823	7595823	A	C	SNP	GRM7	NM_181874	human	genbank	54_36p	+1	reviewed	silent	c.2230	p.R744	1.000	HMMPfam_7tm_3	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
GDF3	9573	genome.wustl.edu	36	12	7734136	7734136	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	12	7734136	7734136	G	T	SNP	GDF3	NM_020634	human	genbank	54_36p	-1	reviewed	missense	c.700	p.L234M	1.000	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
ZNF700	90592	genome.wustl.edu	36	19	11921471	11921471	+	Silent	SNP	C	C	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	19	11921471	11921471	C	G	SNP	ZNF700	NM_144566	human	genbank	54_36p	+1	provisional	silent	c.1632	p.A544	0.684	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF834	0	genome.wustl.edu	36	21	13390660	13390660	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	21	13390660	13390660	C	A	SNP	ZNF834	ENST00000305570	human	ensembl	54_36p	-1	known	missense	c.1052	p.R351I	0.038	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_start_codon
CD97	976	genome.wustl.edu	36	19	14368970	14368970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	19	14368970	14368970	G	A	SNP	CD97	NM_078481	human	genbank	54_36p	+1	reviewed	missense	c.560	p.R187H	0.031	HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL	HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
SREBF1	6720	genome.wustl.edu	36	17	17663093	17663093	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	17	17663093	17663093	T	C	SNP	SREBF1	NM_001005291	human	genbank	54_36p	-1	reviewed	missense	c.1117	p.I373V	1.000	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
LOC727980	727980	genome.wustl.edu	36	14	18925290	18925290	+	RNA	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	14	18925290	18925290	G	A	SNP	LOC727980	XR_036910	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.086	-	-	-	pseudogene
LOC100129842	0	genome.wustl.edu	36	19	20540312	20540312	+	RNA	SNP	C	C	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	19	20540312	20540312	C	A	SNP	LOC100129842	XR_042310	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
PINK1	65018	genome.wustl.edu	36	1	20843727	20843727	+	Silent	SNP	C	A	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	1	20843727	20843727	C	A	SNP	PINK1	NM_032409	human	genbank	54_36p	+1	reviewed	silent	c.934	p.R312	0.993	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NCRNA00153	55857	genome.wustl.edu	36	20	21091060	21091060	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	20	21091060	21091060	G	A	SNP	NCRNA00153	ENST00000246027	human	ensembl	54_36p	+1	known	silent	c.954	p.P318	0.002	NULL	NULL	-	no_errors
C12orf39	80763	genome.wustl.edu	36	12	21573205	21573205	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	12	21573205	21573205	G	C	SNP	C12orf39	NM_030572	human	genbank	54_36p	+1	predicted	missense	c.212	p.R71T	1.000	NULL	NULL	-	no_errors
RAPGEF5	9771	genome.wustl.edu	36	7	22131751	22131751	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	7	22131751	22131751	C	T	SNP	RAPGEF5	NM_012294	human	genbank	54_36p	-1	validated	silent	c.2073	p.Q691	1.000	superfamily_Ras GEF,HMMSmart_SM00147	"superfamily_""Winged helix"" DNA-binding domain,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25927343	25927343	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	10	25927343	25927343	C	T	SNP	GPR158	NM_020752	human	genbank	54_36p	+1	validated	missense	c.2782	p.R928C	0.011	NULL	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_7tm_3	-	no_errors
MASTL	84930	genome.wustl.edu	36	10	27494373	27494373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	10	27494373	27494373	C	T	SNP	MASTL	NM_032844	human	genbank	54_36p	+1	validated	missense	c.710	p.A237V	0.014	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors
HIST1H4K	8362	genome.wustl.edu	36	6	27907017	27907017	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	6	27907017	27907017	C	T	SNP	HIST1H4K	NM_003541	human	genbank	54_36p	-1	reviewed	missense	c.268	p.A90T	1.000	superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	-	no_errors
EWSR1	2130	genome.wustl.edu	36	22	28018506	28018506	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	22	28018506	28018506	G	A	SNP	EWSR1	NM_005243	human	genbank	54_36p	+1	reviewed	missense	c.1075	p.D359N	1.000	superfamily_RNA-binding domain RBD	HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	no_errors
C22orf30	253143	genome.wustl.edu	36	22	30443269	30443269	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	22	30443269	30443269	C	A	SNP	C22orf30	ENST00000327423	human	ensembl	54_36p	-1	known	missense	c.556	p.V186L	1.000	NULL	NULL	-	no_errors
CCL15	6359	genome.wustl.edu	36	17	31352628	31352628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	17	31352628	31352628	G	A	SNP	CCL15	NM_032965	human	genbank	54_36p	-1	reviewed	missense	c.17	p.A6V	0.039	NULL	superfamily_Chemokine_IL8,HMMPfam_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
LY6G6F	259215	genome.wustl.edu	36	6	31783329	31783329	+	Silent	SNP	C	A	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	6	31783329	31783329	C	A	SNP	LY6G6F	NM_001003693	human	genbank	54_36p	+1	provisional	silent	c.168	p.G56	0.116	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
PDZD2	23037	genome.wustl.edu	36	5	32019017	32019017	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	5	32019017	32019017	G	T	SNP	PDZD2	NM_178140	human	genbank	54_36p	+1	reviewed	splice_site	c.477-1	e2-1	1.000	-	-	-	no_errors
SON	6651	genome.wustl.edu	36	21	33837290	33837290	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	21	33837290	33837290	A	C	SNP	SON	NM_138927	human	genbank	54_36p	+1	reviewed	missense	c.22	p.I8L	1.000	NULL	HMMSmart_SM00443,HMMPfam_G-patch,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm	-	no_errors
LOC100130041	0	genome.wustl.edu	36	16	34581895	34581895	+	RNA	SNP	T	T	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	16	34581895	34581895	T	G	SNP	LOC100130041	XR_037947	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
KRT9	3857	genome.wustl.edu	36	17	36978286	36978286	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	17	36978286	36978286	C	G	SNP	KRT9	NM_000226	human	genbank	54_36p	-1	reviewed	missense	c.1170	p.K390N	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
ALG10B	144245	genome.wustl.edu	36	12	37000565	37000565	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	12	37000565	37000565	G	C	SNP	ALG10B	NM_001013620	human	genbank	54_36p	+1	validated	missense	c.705	p.Q235H	0.180	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors
DDX17	10521	genome.wustl.edu	36	22	37225406	37225406	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	22	37225406	37225406	C	G	SNP	DDX17	NM_001098504	human	genbank	54_36p	-1	reviewed	missense	c.483	p.R161S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
RPGR	6103	genome.wustl.edu	36	X	38029978	38029978	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	X	38029978	38029978	C	G	SNP	RPGR	NM_001034853	human	genbank	54_36p	-1	reviewed	missense	c.3218	p.G1073A	0.014	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	-	no_errors
CHD6	84181	genome.wustl.edu	36	20	39483108	39483108	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	20	39483108	39483108	G	A	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	nonsense	c.5581	p.Q1861*	1.000	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
TMEM62	80021	genome.wustl.edu	36	15	41226051	41226051	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	15	41226051	41226051	C	A	SNP	TMEM62	NM_024956	human	genbank	54_36p	+1	provisional	nonsense	c.545	p.S182*	1.000	superfamily_SSF56300	superfamily_SSF56300	-	no_errors
EPB42	2038	genome.wustl.edu	36	15	41288264	41288264	+	Silent	SNP	C	C	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	15	41288264	41288264	C	A	SNP	EPB42	NM_000119	human	genbank	54_36p	-1	reviewed	silent	c.924	p.V308	0.998	superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors
ZNF345	25850	genome.wustl.edu	36	19	42060704	42060704	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	19	42060704	42060704	G	T	SNP	ZNF345	NM_003419	human	genbank	54_36p	+1	provisional	missense	c.1132	p.A378S	0.107	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SLC24A5	283652	genome.wustl.edu	36	15	46201474	46201474	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	15	46201474	46201474	T	A	SNP	SLC24A5	NM_205850	human	genbank	54_36p	+1	reviewed	missense	c.250	p.S84T	0.988	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
CCR3	1232	genome.wustl.edu	36	3	46282414	46282414	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	3	46282414	46282414	C	A	SNP	CCR3	NM_001837	human	genbank	54_36p	+1	reviewed	missense	c.761	p.P254H	0.998	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
COL2A1	1280	genome.wustl.edu	36	12	46656105	46656105	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	12	46656105	46656105	C	T	SNP	COL2A1	NM_001844	human	genbank	54_36p	-1	reviewed	missense	c.3505	p.V1169I	0.998	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
KCNG1	3755	genome.wustl.edu	36	20	49060280	49060280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	20	49060280	49060280	C	T	SNP	KCNG1	NM_002237	human	genbank	54_36p	-1	reviewed	missense	c.3	p.M1I	1.000	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49674458	49674458	+	Silent	SNP	A	A	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	3	49674458	49674458	A	T	SNP	BSN	NM_003458	human	genbank	54_36p	+1	validated	silent	c.10176	p.A3392	0.981	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
SYT3	84258	genome.wustl.edu	36	19	55827442	55827442	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	19	55827442	55827442	G	C	SNP	SYT3	NM_032298	human	genbank	54_36p	-1	provisional	missense	c.587	p.S196C	0.733	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
PLEK	5341	genome.wustl.edu	36	2	68461409	68461409	+	Silent	SNP	A	A	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	2	68461409	68461409	A	T	SNP	PLEK	NM_002664	human	genbank	54_36p	+1	validated	silent	c.249	p.A83	0.990	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP	-	no_errors
PPFIA1	8500	genome.wustl.edu	36	11	69872011	69872011	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	11	69872011	69872011	G	C	SNP	PPFIA1	NM_003626	human	genbank	54_36p	+1	reviewed	missense	c.2000	p.G667A	0.850	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors
UGT2B4	7363	genome.wustl.edu	36	4	70380963	70380963	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	4	70380963	70380963	C	A	SNP	UGT2B4	NM_021139	human	genbank	54_36p	-1	validated	missense	c.1565	p.G522V	0.004	HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
LOC653079	653079	genome.wustl.edu	36	12	75578492	75578492	+	RNA	SNP	C	C	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	12	75578492	75578492	C	A	SNP	LOC653079	XR_016115	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DUPD1	338599	genome.wustl.edu	36	10	76467762	76467762	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	10	76467762	76467762	G	A	SNP	DUPD1	NM_001003892	human	genbank	54_36p	-1	provisional	silent	c.501	p.D167	1.000	superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc	superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
ARSB	411	genome.wustl.edu	36	5	78112074	78112074	+	Silent	SNP	G	A	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	5	78112074	78112074	G	A	SNP	ARSB	NM_000046	human	genbank	54_36p	-1	reviewed	silent	c.1504	p.L502	0.960	superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
SEC31A	22872	genome.wustl.edu	36	4	83961238	83961238	+	Silent	SNP	C	G	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	4	83961238	83961238	C	G	SNP	SEC31A	NM_001077207	human	genbank	54_36p	-1	reviewed	silent	c.3459	p.L1153	0.996	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
C9orf79	286234	genome.wustl.edu	36	9	89692727	89692727	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	9	89692727	89692727	G	C	SNP	C9orf79	NM_178828	human	genbank	54_36p	+1	validated	missense	c.3505	p.A1169P	0.001	NULL	NULL	-	no_errors
UNC5C	8633	genome.wustl.edu	36	4	96441874	96441874	+	Silent	SNP	T	C	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	4	96441874	96441874	T	C	SNP	UNC5C	NM_003728	human	genbank	54_36p	-1	reviewed	silent	c.396	p.E132	0.996	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
VPS13B	157680	genome.wustl.edu	36	8	100473063	100473063	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	8	100473063	100473063	G	T	SNP	VPS13B	NM_017890	human	genbank	54_36p	+1	reviewed	missense	c.3037	p.A1013S	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
SORCS1	114815	genome.wustl.edu	36	10	108479812	108479812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	10	108479812	108479812	C	T	SNP	SORCS1	NM_001013031	human	genbank	54_36p	-1	reviewed	missense	c.1010	p.R337K	0.988	superfamily_SSF110296,HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD	-	no_errors
PITX2	5308	genome.wustl.edu	36	4	111758764	111758764	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	4	111758764	111758764	C	G	SNP	PITX2	NM_000325	human	genbank	54_36p	-1	reviewed	missense	c.941	p.S314T	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors
USP28	57646	genome.wustl.edu	36	11	113179805	113179805	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	11	113179805	113179805	C	T	SNP	USP28	NM_020886	human	genbank	54_36p	-1	validated	nonsense	c.2663	p.W888*	1.000	NULL	superfamily_UBA-like,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_CPSASE_2	-	no_errors
RPL23AP7	118433	genome.wustl.edu	36	2	114086061	114086061	+	RNA	SNP	A	T	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	2	114086061	114086061	A	T	SNP	RPL23AP7	NR_000029	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
CD1C	911	genome.wustl.edu	36	1	156529872	156529872	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	1	156529872	156529872	A	C	SNP	CD1C	ENST00000368169	human	ensembl	54_36p	+1	known	missense	c.893	p.H298P	0.005	superfamily_Immunoglobulin	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors
LRRIQ4	344657	genome.wustl.edu	36	3	171031083	171031083	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	3	171031083	171031083	A	T	SNP	LRRIQ4	NM_001080460	human	genbank	54_36p	+1	inferred	missense	c.1304	p.Q435L	0.834	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
SERPINC1	462	genome.wustl.edu	36	1	172139747	172139747	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	1	172139747	172139747	G	C	SNP	SERPINC1	NM_000488	human	genbank	54_36p	-1	validated	missense	c.1298	p.T433S	0.993	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
MSX2	4488	genome.wustl.edu	36	5	174088884	174088884	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	5	174088884	174088884	T	A	SNP	MSX2	NM_002449	human	genbank	54_36p	+1	reviewed	missense	c.496	p.Y166N	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LMAN2	10960	genome.wustl.edu	36	5	176691850	176691850	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	5	176691850	176691850	T	C	SNP	LMAN2	NM_006816	human	genbank	54_36p	-1	reviewed	missense	c.914	p.N305S	1.000	NULL	superfamily_ConA_like_lec_gl,HMMPfam_Lectin_leg-like	-	no_errors
LRRN2	10446	genome.wustl.edu	36	1	202854465	202854465	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	1	202854465	202854465	G	C	SNP	LRRN2	NM_006338	human	genbank	54_36p	-1	reviewed	missense	c.1279	p.R427G	0.992	superfamily_Immunoglobulin,HMMPfam_I-set	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
TRPM8	79054	genome.wustl.edu	36	2	234534428	234534428	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	2	234534428	234534428	C	T	SNP	TRPM8	NM_024080	human	genbank	54_36p	+1	validated	silent	c.1632	p.D544	0.046	NULL	HMMPfam_Ion_trans	-	no_errors
HEATR1	55127	genome.wustl.edu	36	1	234785364	234785364	+	Silent	SNP	T	T	C	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	1	234785364	234785364	T	C	SNP	HEATR1	NM_018072	human	genbank	54_36p	-1	validated	silent	c.5778	p.E1926	0.996	superfamily_ARM-type_fold,HMMPfam_BP28CT	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	-	no_errors
CAPG	822	genome.wustl.edu	36	2	85482546	85482547	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	2	85482546	85482547	-	A	INS	CAPG	NM_001747	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.69_68	p.W24fs	0.145:0.187	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	-	no_errors
FAM58B	339521	genome.wustl.edu	36	1	198449327	198449350	+	In_Frame_Del	DEL	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA	-	novel	unknown	TCGA-04-1651-01A-01W-0639-09	TCGA-04-1651-11A-01W-0639-09	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f02d550d-d80c-449f-9d69-37ffb1e649b6	8e8ba185-6faf-49df-9784-594e179731c5	1	198449327	198449350	GAGGACGCCGGAGAGGAGGCCGGA	-	DEL	FAM58B	NM_001105517	human	genbank	54_36p	+1	inferred	in_frame_del	c.13_36	p.GEEAGEDA8in_frame_del	0.017:0.005:0.003:0.002:0.001:0.001:0.001:0.000:0.001:0.001:0.005:0.006:0.008:0.007:0.007:0.007:0.005:0.005:0.007:0.009:0.009:0.008:0.007:0.007	NULL	PatternScan_CYCLINS,superfamily_Cyclin_like,HMMSmart_CYCLIN	(deletion:cds_exon[198449315,198450073])	no_errors
