Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
CSMD1	64478	genome.wustl.edu	36	8	2819519	2819519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	8	2819519	2819519	G	A	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.8605	p.R2869C	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ANO2	57101	genome.wustl.edu	36	12	5557872	5557872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	12	5557872	5557872	G	A	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	silent	c.2310	p.N770	0.995	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519129	7519129	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	17	7519129	7519129	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.526	p.C176G	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
XAB2	56949	genome.wustl.edu	36	19	7594131	7594131	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	19	7594131	7594131	G	C	SNP	XAB2	NM_020196	human	genbank	54_36p	-1	validated	missense	c.1164	p.F388L	1.000	superfamily_SSF48452	HMMSmart_HAT,superfamily_SSF48452	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8948849	8948849	+	Silent	SNP	G	G	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	19	8948849	8948849	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.3966	p.T1322	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
LOC727833	727833	genome.wustl.edu	36	16	10113842	10113842	+	RNA	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	16	10113842	10113842	G	A	SNP	LOC727833	XR_015181	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MYH1	4619	genome.wustl.edu	36	17	10341915	10341915	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	17	10341915	10341915	T	C	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.4226	p.E1409G	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
TLR7	51284	genome.wustl.edu	36	X	12815288	12815288	+	Silent	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	X	12815288	12815288	T	C	SNP	TLR7	NM_016562	human	genbank	54_36p	+1	reviewed	silent	c.1740	p.F580	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
FREM1	158326	genome.wustl.edu	36	9	14760702	14760702	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	9	14760702	14760702	G	A	SNP	FREM1	NM_144966	human	genbank	54_36p	-1	validated	missense	c.4960	p.R1654C	0.744	NULL	superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
LOC100131966	0	genome.wustl.edu	36	18	18066317	18066317	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	18	18066317	18066317	C	A	SNP	LOC100131966	XM_001714344	human	genbank	54_36p	+1	model	missense	c.463	p.P155T	0.000	NULL	NULL	-	no_errors
NHLRC1	378884	genome.wustl.edu	36	6	18229851	18229851	+	Silent	SNP	G	G	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	6	18229851	18229851	G	T	SNP	NHLRC1	NM_198586	human	genbank	54_36p	-1	provisional	silent	c.966	p.A322	0.859	superfamily_SSF101898	superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF101898,HMMPfam_NHL	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18650479	18650479	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	13	18650479	18650479	G	A	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	silent	c.282	p.T94	0.988	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
MEIS3P2	0	genome.wustl.edu	36	17	20434000	20434000	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	17	20434000	20434000	T	A	SNP	MEIS3P2	ENST00000340731	human	ensembl	54_36p	+1	known	missense	c.803	p.L268H	1.000	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
IFNA21	3452	genome.wustl.edu	36	9	21156467	21156467	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	9	21156467	21156467	G	C	SNP	IFNA21	NM_002175	human	genbank	54_36p	-1	validated	missense	c.145	p.P49A	0.002	HMMPfam_Interferon,superfamily_4_helix_cytokine	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D	-	no_errors
DNAH11	8701	genome.wustl.edu	36	7	21750688	21750688	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	7	21750688	21750688	A	G	SNP	DNAH11	NM_003777	human	genbank	54_36p	+1	reviewed	missense	c.8284	p.R2762G	0.996	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SNORD116-3	0	genome.wustl.edu	36	15	22853173	22853173	+	RNA	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	15	22853173	22853173	G	A	SNP	SNORD116-3	NR_003318	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.840	-	-	-	no_errors
PPARGC1A	10891	genome.wustl.edu	36	4	23425127	23425127	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	4	23425127	23425127	G	A	SNP	PPARGC1A	NM_013261	human	genbank	54_36p	-1	reviewed	silent	c.1077	p.S359	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
CDH9	1007	genome.wustl.edu	36	5	26917329	26917329	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	5	26917329	26917329	C	T	SNP	CDH9	NM_016279	human	genbank	54_36p	-1	reviewed	silent	c.2043	p.E681	1.000	HMMPfam_Cadherin_C	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
ADAMTS5	11096	genome.wustl.edu	36	21	27227226	27227226	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	21	27227226	27227226	G	A	SNP	ADAMTS5	NM_007038	human	genbank	54_36p	-1	reviewed	silent	c.1698	p.S566	1.000	superfamily_TSP-1 type 1 repeat	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
OR11A1	26531	genome.wustl.edu	36	6	29502476	29502476	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	6	29502476	29502476	T	C	SNP	OR11A1	NM_013937	human	genbank	54_36p	-1	provisional	missense	c.922	p.I308V	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
NEUROD6	63974	genome.wustl.edu	36	7	31345101	31345101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	7	31345101	31345101	C	T	SNP	NEUROD6	NM_022728	human	genbank	54_36p	-1	provisional	missense	c.307	p.E103K	0.995	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors
PDE1C	5137	genome.wustl.edu	36	7	31885225	31885225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	7	31885225	31885225	G	A	SNP	PDE1C	NM_005020	human	genbank	54_36p	-1	provisional	missense	c.334	p.R112W	0.806	HMMPfam_PDEase_I_N	HMMPfam_PDEase_I_N,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31922183	31922183	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	1	31922183	31922183	G	A	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	silent	c.2292	p.P764	0.608	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
LOC647157	647157	genome.wustl.edu	36	16	32349593	32349593	+	RNA	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	16	32349593	32349593	C	T	SNP	LOC647157	XR_017478	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.936	-	-	-	pseudogene
HIPK3	10114	genome.wustl.edu	36	11	33265588	33265588	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	33265588	33265588	T	C	SNP	HIPK3	NM_005734	human	genbank	54_36p	+1	validated	missense	c.1052	p.V351A	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ANKRD18B	441459	genome.wustl.edu	36	9	33519063	33519063	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	9	33519063	33519063	T	G	SNP	ANKRD18B	ENST00000290943	human	ensembl	54_36p	+1	known	missense	c.387	p.I129M	0.029	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
CSNK1E	1454	genome.wustl.edu	36	22	37026859	37026859	+	Silent	SNP	C	C	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	22	37026859	37026859	C	A	SNP	CSNK1E	NM_001894	human	genbank	54_36p	-1	reviewed	silent	c.381	p.R127	0.996	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40414257	40414257	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	20	40414257	40414257	T	C	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.1643	p.E548G	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
KBTBD5	131377	genome.wustl.edu	36	3	42704689	42704689	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	3	42704689	42704689	C	T	SNP	KBTBD5	NM_152393	human	genbank	54_36p	+1	validated	missense	c.1204	p.R402C	0.995	superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
DLK2	65989	genome.wustl.edu	36	6	43526486	43526486	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	6	43526486	43526486	C	A	SNP	DLK2	NM_023932	human	genbank	54_36p	-1	validated	missense	c.921	p.L307F	0.944	NULL	PatternScan_ZF_RING_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
LOC653436	653436	genome.wustl.edu	36	9	44037364	44037364	+	RNA	SNP	C	C	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	9	44037364	44037364	C	A	SNP	LOC653436	XR_042306	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.526	-	-	-	pseudogene
LOC653436	653436	genome.wustl.edu	36	9	44058381	44058381	+	RNA	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	9	44058381	44058381	G	A	SNP	LOC653436	XR_042306	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.017	-	-	-	pseudogene
ALOX5	240	genome.wustl.edu	36	10	45227652	45227652	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	10	45227652	45227652	G	A	SNP	ALOX5	NM_000698	human	genbank	54_36p	+1	reviewed	missense	c.439	p.E147K	1.000	superfamily_Lipoxygenase,HMMPfam_Lipoxygenase	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors
XCR1	2829	genome.wustl.edu	36	3	46038347	46038347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	3	46038347	46038347	C	T	SNP	XCR1	NM_001024644	human	genbank	54_36p	-1	reviewed	missense	c.97	p.A33T	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LRRC2	79442	genome.wustl.edu	36	3	46546468	46546468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	3	46546468	46546468	C	T	SNP	LRRC2	NM_024512	human	genbank	54_36p	-1	validated	missense	c.704	p.R235Q	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	-	no_errors
FAM21B	55747	genome.wustl.edu	36	10	47431513	47431513	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	10	47431513	47431513	G	A	SNP	FAM21B	NM_018232	human	genbank	54_36p	+1	validated	silent	c.984	p.T328	0.607	NULL	NULL	-	no_errors
CCDC51	79714	genome.wustl.edu	36	3	48451265	48451265	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	3	48451265	48451265	T	C	SNP	CCDC51	NM_024661	human	genbank	54_36p	-1	validated	missense	c.278	p.N93S	0.891	NULL	NULL	-	no_errors
OR4C12	283093	genome.wustl.edu	36	11	49960412	49960412	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	49960412	49960412	C	A	SNP	OR4C12	NM_001005270	human	genbank	54_36p	-1	provisional	missense	c.202	p.D68Y	0.998	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CCNB3	85417	genome.wustl.edu	36	X	50069856	50069856	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	X	50069856	50069856	G	A	SNP	CCNB3	NM_033031	human	genbank	54_36p	+1	reviewed	silent	c.1947	p.L649	0.000	NULL	superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385,HMMPfam_Cyclin_C	-	no_errors
LOC729023	729023	genome.wustl.edu	36	10	52113373	52113373	+	RNA	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	10	52113373	52113373	C	T	SNP	LOC729023	XR_038278	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
DST	667	genome.wustl.edu	36	6	56612750	56612750	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	6	56612750	56612750	T	A	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.1922	p.H641L	1.000	HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
RPS9	6203	genome.wustl.edu	36	19	59403115	59403115	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	19	59403115	59403115	G	A	SNP	RPS9	NM_001013	human	genbank	54_36p	+1	reviewed	missense	c.445	p.V149I	1.000	superfamily_Alpha-L RNA-binding motif,HMMPfam_S4,HMMSmart_SM00363	HMMPfam_Ribosomal_S4,superfamily_Alpha-L RNA-binding motif,PatternScan_RIBOSOMAL_S4,HMMPfam_S4,HMMSmart_SM00363	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63514424	63514424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	14	63514424	63514424	G	A	SNP	SYNE2	NM_182914	human	genbank	54_36p	+1	validated	missense	c.1342	p.E448K	0.993	superfamily_Spectrin	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
RGS7BP	401190	genome.wustl.edu	36	5	63838327	63838327	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	5	63838327	63838327	C	T	SNP	RGS7BP	NM_001029875	human	genbank	54_36p	+1	provisional	silent	c.120	p.S40	1.000	NULL	NULL	-	no_errors
HEPH	9843	genome.wustl.edu	36	X	65328755	65328755	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	X	65328755	65328755	G	A	SNP	HEPH	NM_014799	human	genbank	54_36p	+1	reviewed	silent	c.321	p.L107	0.000	superfamily_Cupredoxin	superfamily_Cupredoxin,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors
TSGA10IP	254187	genome.wustl.edu	36	11	65471294	65471294	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	65471294	65471294	T	C	SNP	TSGA10IP	NM_152762	human	genbank	54_36p	+1	validated	missense	c.422	p.F141S	0.000	NULL	NULL	-	pseudogene
CYP7B1	9420	genome.wustl.edu	36	8	65699612	65699612	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	8	65699612	65699612	G	T	SNP	CYP7B1	NM_004820	human	genbank	54_36p	-1	reviewed	missense	c.161	p.P54H	1.000	superfamily_Cytochrome P450	superfamily_Cytochrome P450,HMMPfam_p450	-	no_errors
CTNNA3	29119	genome.wustl.edu	36	10	68051528	68051528	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	10	68051528	68051528	G	A	SNP	CTNNA3	NM_013266	human	genbank	54_36p	-1	validated	silent	c.1302	p.S434	0.999	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
MYO6	4646	genome.wustl.edu	36	6	76656618	76656618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	6	76656618	76656618	G	A	SNP	MYO6	NM_004999	human	genbank	54_36p	+1	reviewed	missense	c.2783	p.R928H	0.414	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
AZI1	22994	genome.wustl.edu	36	17	76795255	76795255	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	17	76795255	76795255	G	A	SNP	AZI1	NM_014984	human	genbank	54_36p	-1	validated	silent	c.399	p.P133	0.711	NULL	NULL	-	no_errors
ANKRD34B	340120	genome.wustl.edu	36	5	79890862	79890862	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	5	79890862	79890862	C	T	SNP	ANKRD34B	NM_001004441	human	genbank	54_36p	-1	provisional	missense	c.733	p.A245T	0.737	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors
REXO1L7P	441363	genome.wustl.edu	36	8	86909738	86909738	+	RNA	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	8	86909738	86909738	G	A	SNP	REXO1L7P	XR_041982	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	-	pseudogene
PTPN21	11099	genome.wustl.edu	36	14	88009880	88009880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	14	88009880	88009880	A	G	SNP	PTPN21	NM_007039	human	genbank	54_36p	-1	reviewed	missense	c.2531	p.V844A	0.594	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
SLCO3A1	28232	genome.wustl.edu	36	15	90448658	90448658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	15	90448658	90448658	G	A	SNP	SLCO3A1	NM_013272	human	genbank	54_36p	+1	validated	missense	c.891	p.M297I	0.997	superfamily_MFS general substrate transporter,HMMPfam_OATP	superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors
ZCWPW1	55063	genome.wustl.edu	36	7	99851863	99851863	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	7	99851863	99851863	C	T	SNP	ZCWPW1	NM_017984	human	genbank	54_36p	-1	validated	splice_site	c.631+1	e5+1	0.865	-	-	-	no_errors
TMEM119	338773	genome.wustl.edu	36	12	107510160	107510160	+	Silent	SNP	C	T	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	12	107510160	107510160	C	T	SNP	TMEM119	NM_181724	human	genbank	54_36p	-1	validated	silent	c.129	p.E43	0.995	NULL	NULL	-	no_errors
SLC5A7	60482	genome.wustl.edu	36	2	107993138	107993138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	2	107993138	107993138	G	A	SNP	SLC5A7	NM_021815	human	genbank	54_36p	+1	provisional	missense	c.1132	p.V378I	0.918	HMMPfam_SSF	PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF	-	no_errors
ZC3H12C	85463	genome.wustl.edu	36	11	109535335	109535335	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	109535335	109535335	A	G	SNP	ZC3H12C	NM_033390	human	genbank	54_36p	+1	validated	missense	c.1058	p.N353S	1.000	NULL	NULL	-	no_errors
CHIA	27159	genome.wustl.edu	36	1	111663354	111663354	+	Silent	SNP	C	C	G	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	1	111663354	111663354	C	G	SNP	CHIA	NM_201653	human	genbank	54_36p	+1	validated	silent	c.1005	p.G335	0.994	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,PatternScan_CHITINASE_18,superfamily_Chitinase insertion domain,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins,HMMPfam_CBM_14	-	no_errors
SIDT2	51092	genome.wustl.edu	36	11	116567867	116567867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	116567867	116567867	C	T	SNP	SIDT2	NM_001040455	human	genbank	54_36p	+1	validated	missense	c.1799	p.P600L	0.992	NULL	NULL	-	no_errors
POU2F3	25833	genome.wustl.edu	36	11	119675563	119675563	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	119675563	119675563	G	A	SNP	POU2F3	NM_014352	human	genbank	54_36p	+1	validated	silent	c.279	p.P93	0.698	NULL	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
HAO2	51179	genome.wustl.edu	36	1	119737936	119737936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	1	119737936	119737936	C	T	SNP	HAO2	NM_001005783	human	genbank	54_36p	+1	reviewed	missense	c.1006	p.R336W	0.999	superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh	superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh,PatternScan_FMN_HYDROXY_ACID_DH_1	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121438932	121438932	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	7	121438932	121438932	G	T	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	+1	reviewed	missense	c.2596	p.D866Y	0.999	NULL	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
THOC2	57187	genome.wustl.edu	36	X	122694542	122694542	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	X	122694542	122694542	C	T	SNP	THOC2	NM_001081550	human	genbank	54_36p	-1	validated	silent	c.12	p.A4	0.860	NULL	NULL	-	no_errors
DTX3L	151636	genome.wustl.edu	36	3	123771283	123771283	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	3	123771283	123771283	C	T	SNP	DTX3L	NM_138287	human	genbank	54_36p	+1	validated	silent	c.1657	p.L553	0.000	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123833822	123833822	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	10	123833822	123833822	G	A	SNP	TACC2	NM_206862	human	genbank	54_36p	+1	reviewed	missense	c.1817	p.R606H	0.000	NULL	HMMPfam_TACC	-	no_errors
PSTK	118672	genome.wustl.edu	36	10	124730031	124730031	+	Silent	SNP	C	C	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	10	124730031	124730031	C	A	SNP	PSTK	NM_153336	human	genbank	54_36p	+1	validated	silent	c.46	p.R16	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_KTI12	-	no_errors
PCDHB12	56124	genome.wustl.edu	36	5	140569528	140569528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	5	140569528	140569528	C	T	SNP	PCDHB12	NM_018932	human	genbank	54_36p	+1	reviewed	missense	c.865	p.R289C	0.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHGB2	56103	genome.wustl.edu	36	5	140720966	140720966	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	5	140720966	140720966	G	A	SNP	PCDHGB2	NM_018923	human	genbank	54_36p	+1	reviewed	silent	c.1080	p.S360	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	140916663	140916663	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	2	140916663	140916663	C	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	splice_site	c.10295-1	e66-1	1.000	-	-	-	no_errors
MAGEA11	4110	genome.wustl.edu	36	X	148576986	148576986	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	X	148576986	148576986	C	A	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	missense	c.273	p.W91C	0.008	NULL	HMMPfam_MAGE	-	no_errors
NMUR2	56923	genome.wustl.edu	36	5	151764500	151764500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	5	151764500	151764500	G	A	SNP	NMUR2	NM_020167	human	genbank	54_36p	-1	reviewed	missense	c.368	p.T123M	0.998	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DPP6	1804	genome.wustl.edu	36	7	154192172	154192172	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	7	154192172	154192172	C	T	SNP	DPP6	ENST00000252510	human	ensembl	54_36p	+1	known	silent	c.996	p.T332	0.667	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors
NES	10763	genome.wustl.edu	36	1	154908308	154908308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	1	154908308	154908308	G	A	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.2296	p.R766W	0.000	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
RBM16	22828	genome.wustl.edu	36	6	155187124	155187124	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	6	155187124	155187124	C	G	SNP	RBM16	NM_014892	human	genbank	54_36p	+1	validated	missense	c.1991	p.P664R	0.967	NULL	superfamily_ENTH_VHS,HMMSmart_RPR,HMMPfam_DUF618,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
SCN3A	6328	genome.wustl.edu	36	2	165719391	165719391	+	Silent	SNP	T	T	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	2	165719391	165719391	T	A	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	silent	c.1197	p.T399	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
TTLL2	83887	genome.wustl.edu	36	6	167673649	167673649	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	6	167673649	167673649	G	A	SNP	TTLL2	NM_031949	human	genbank	54_36p	+1	validated	missense	c.271	p.V91I	0.002	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
ADAMTS2	9509	genome.wustl.edu	36	5	178511760	178511760	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	5	178511760	178511760	C	A	SNP	ADAMTS2	NM_014244	human	genbank	54_36p	-1	reviewed	missense	c.1618	p.A540S	0.998	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
MUC20	200958	genome.wustl.edu	36	3	196938707	196938707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	3	196938707	196938707	C	T	SNP	MUC20	NM_152673	human	genbank	54_36p	+1	reviewed	missense	c.1049	p.A350V	0.001	NULL	NULL	-	no_errors
TRAK2	66008	genome.wustl.edu	36	2	201971188	201971188	+	Silent	SNP	T	T	C	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	2	201971188	201971188	T	C	SNP	TRAK2	NM_015049	human	genbank	54_36p	-1	validated	silent	c.615	p.Q205	0.987	HMMPfam_HAP1_N	HMMPfam_HAP1_N	-	no_errors
OR2L5	0	genome.wustl.edu	36	1	246252205	246252205	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	1	246252205	246252205	G	A	SNP	OR2L5	ENST00000355281	human	ensembl	54_36p	+1	known	silent	c.333	p.A111	0.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92174253	92174255	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	ACA	ACA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	92174253	92174255	ACA	-	DEL	FAT3	NM_001008781	human	genbank	54_36p	+1	validated	in_frame_del	c.8426_8428	p.N2810in_frame_del	1.000:1.000:1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	(deletion:cds_exon[92170650,92174723])	no_errors
CCDC67	159989	genome.wustl.edu	36	11	92767347	92767347	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-04-1652-01A-01W-0639-09	TCGA-04-1652-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8edb3a01-22e3-4671-8685-75f08d7af0d5	1bfaaa95-191e-4fa6-ae9f-1e11b4285f5c	11	92767347	92767347	C	-	DEL	CCDC67	NM_181645	human	genbank	54_36p	+1	validated	frame_shift_del	c.1116	p.L373fs	0.999	NULL	NULL	(deletion:cds_exon[92767273,92767470])	no_errors
