Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
PRAMEF4	400735	genome.wustl.edu	36	1	12864794	12864794	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	1	12864794	12864794	A	G	SNP	PRAMEF4	NM_001009611	human	genbank	54_36p	-1	validated	missense	c.343	p.W115R	0.09	NULL	-	-	no_errors
APH1A	51107	genome.wustl.edu	36	1	148507029	148507029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	1	148507029	148507029	G	C	SNP	APH1A	NM_001077628	human	genbank	54_36p	-1	validated	missense	c.236	p.S79C	1	NULL	-	-	no_errors
HRNR	388697	genome.wustl.edu	36	1	150453461	150453461	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	1	150453461	150453461	C	T	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	missense	c.7268	p.R2423Q	0	NULL	-	-	no_errors
KIAA0467	23334	genome.wustl.edu	36	1	43664194	43664194	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	1	43664194	43664194	G	A	SNP	KIAA0467	NM_015284	human	genbank	54_36p	1	predicted	silent	c.390	p.P130		NULL	-	-	no_errors
ZFYVE9	9372	genome.wustl.edu	36	1	52584418	52584418	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	1	52584418	52584418	C	G	SNP	ZFYVE9	NM_004799	human	genbank	54_36p	1	reviewed	missense	c.4215	p.C1405W	1	NULL	HMMPfam_FYVE;superfamily_FYVE/PHD zinc finger	-	no_errors
ENO1	2023	genome.wustl.edu	36	1	8846605	8846605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	1	8846605	8846605	G	A	SNP	ENO1	NM_001428	human	genbank	54_36p	-1	reviewed	silent	c.999	p.N333		HMMPfam_Enolase_C	HMMPfam_Enolase_C;HMMPfam_Enolase_N;superfamily_Enolase C-terminal domain-like;superfamily_Enolase N-terminal domain-like	-	no_errors
LGI1	9211	genome.wustl.edu	36	10	95543049	95543049	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	10	95543049	95543049	G	C	SNP	LGI1	NM_005097	human	genbank	54_36p	1	reviewed	missense	c.790	p.E264Q	1	HMMPfam_EPTP	HMMPfam_LRRCT;HMMPfam_LRR_1;HMMPfam_EPTP;superfamily_L domain-like	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76548208	76548208	+	Silent	SNP	C	G	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	11	76548208	76548208	C	G	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	silent	c.1071	p.S357	0.3	NULL	-	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42103950	42103950	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	12	42103950	42103950	C	G	SNP	ADAMTS20	ENST00000389417	human	ensembl	54_36p	-1	known	missense	c.4332	p.L1444F		NULL	-	-	no_errors
PABPN1	8106	genome.wustl.edu	36	14	22861342	22861342	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	14	22861342	22861342	A	G	SNP	PABPN1	NM_004643	human	genbank	54_36p	1	reviewed	missense	c.464	p.N155S	1	NULL	-	-	no_errors
CPSF2	53981	genome.wustl.edu	36	14	91697797	91697797	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	14	91697797	91697797	T	G	SNP	CPSF2	NM_017437	human	genbank	54_36p	1	validated	missense	c.2305	p.Y769D	1	NULL	-	-	no_errors
NDUFAF1	51103	genome.wustl.edu	36	15	39474438	39474438	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	15	39474438	39474438	T	G	SNP	NDUFAF1	NM_016013	human	genbank	54_36p	-1	validated	missense	c.670	p.K224Q	0.01	HMMPfam_CIA30	HMMPfam_CIA30	-	no_errors
LIPC	3990	genome.wustl.edu	36	15	56617868	56617868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	15	56617868	56617868	C	T	SNP	LIPC	NM_000236	human	genbank	54_36p	1	reviewed	silent	c.133	p.L45		HMMPfam_Lipase	HMMPfam_PLAT;HMMPfam_Lipase;superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain);superfamily_alpha/beta-Hydrolases	-	no_errors
LRRC49	54839	genome.wustl.edu	36	15	69016209	69016209	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	15	69016209	69016209	T	G	SNP	LRRC49	NM_017691	human	genbank	54_36p	1	validated	missense	c.767	p.I256R	1	NULL	-	-	no_errors
ADAMTS17	170691	genome.wustl.edu	36	15	98512972	98512972	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	15	98512972	98512972	C	T	SNP	ADAMTS17	NM_139057	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.G420S	1	HMMPfam_Reprolysin	"HMMPfam_TSP_1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_TSP-1 type 1 repeat"	-	no_errors
HS3ST2	9956	genome.wustl.edu	36	16	22833913	22833913	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	16	22833913	22833913	C	T	SNP	HS3ST2	NM_006043	human	genbank	54_36p	1	reviewed	silent	c.633	p.A211	1	HMMPfam_Sulfotransfer_1	HMMPfam_Sulfotransfer_1;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDH3	1001	genome.wustl.edu	36	16	67276041	67276041	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	16	67276041	67276041	G	A	SNP	CDH3	NM_001793	human	genbank	54_36p	1	reviewed	missense	c.1237	p.E413K	1	HMMPfam_Cadherin	HMMPfam_Cadherin;superfamily_Cadherin-like;HMMPfam_Cadherin_C	-	no_errors
SPACA3	124912	genome.wustl.edu	36	17	28346653	28346653	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	17	28346653	28346653	G	A	SNP	SPACA3	NM_173847	human	genbank	54_36p	1	provisional	missense	c.148	p.A50T	0.01	NULL	-	-	no_errors
LRRC46	90506	genome.wustl.edu	36	17	43267764	43267764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	17	43267764	43267764	G	A	SNP	LRRC46	NM_033413	human	genbank	54_36p	1	provisional	missense	c.272	p.R91H	1	NULL	-	-	no_errors
GPRC5C	55890	genome.wustl.edu	36	17	69948051	69948051	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	17	69948051	69948051	C	T	SNP	GPRC5C	NM_022036	human	genbank	54_36p	1	reviewed	missense	c.676	p.R226W	0.94	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519259	7519259	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	17	7519259	7519259	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.396	p.K132N	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
HRH4	59340	genome.wustl.edu	36	18	20311168	20311168	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	18	20311168	20311168	G	T	SNP	HRH4	NM_021624	human	genbank	54_36p	1	reviewed	missense	c.817	p.A273S		NULL	-	-	no_errors
MAST3	23031	genome.wustl.edu	36	19	18115610	18115610	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	19	18115610	18115610	T	A	SNP	MAST3	NM_015016	human	genbank	54_36p	1	validated	missense	c.2290	p.S764T	0.01	NULL	-	-	no_errors
PSG11	5680	genome.wustl.edu	36	19	48211161	48211161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	19	48211161	48211161	C	T	SNP	PSG11	NM_002785	human	genbank	54_36p	-1	validated	missense	c.911	p.R304H	0.26	NULL	-	-	no_errors
LOC100128975	100128975	genome.wustl.edu	36	19	19909009	19909009	+	Silent	SNP	G	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	19	19909009	19909009	G	A	SNP	LOC100128975	XM_001719745	human	genbank	54_36p	-1	model	silent	c.279	p.V93		NULL	-	-	no_errors
PIKFYVE	200576	genome.wustl.edu	36	2	208846602	208846602	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	2	208846602	208846602	G	C	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	missense	c.222	p.W74C	1	NULL	"HMMPfam_FYVE;HMMPfam_DEP;HMMPfam_Cpn60_TCP1;HMMPfam_PIP5K;superfamily_FYVE/PHD zinc finger;superfamily_""Winged helix"" DNA-binding domain;superfamily_Spectrin repeat;superfamily_GroEL apical domain-like;superfamily_GroEL-intermediate domain like;superfamily_SAICAR synthase-like"	-	no_errors
DLGAP4	22839	genome.wustl.edu	36	20	34494244	34494244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	20	34494244	34494244	G	T	SNP	DLGAP4	NM_014902	human	genbank	54_36p	1	reviewed	missense	c.710	p.S237I	0.98	NULL	-	-	no_errors
EIF4ENIF1	56478	genome.wustl.edu	36	22	30166737	30166737	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	-	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	22	30166737	30166737	C	-	DEL	EIF4ENIF1	NM_019843	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2669	p.G890fs	1	NULL	-	(deletion:cds_exon[30166690;30166854])	no_errors
GPR149	344758	genome.wustl.edu	36	3	155538219	155538219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	3	155538219	155538219	G	A	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.2159	p.A720V	1	NULL	-	-	no_errors
PLXNB1	5364	genome.wustl.edu	36	3	48429549	48429549	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	3	48429549	48429549	C	A	SNP	PLXNB1	NM_002673	human	genbank	54_36p	-1	validated	missense	c.4569	p.K1523N	1	NULL	-	-	no_errors
COL7A1	1294	genome.wustl.edu	36	3	48598288	48598288	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	3	48598288	48598288	C	A	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	missense	c.3765	p.Q1255H	1	NULL	HMMPfam_VWA;HMMPfam_Kunitz_BPTI;superfamily_BPTI-like;HMMPfam_fn3;HMMPfam_Collagen;superfamily_Fibronectin type III;superfamily_vWA-like	-	no_errors
COL7A1	1294	genome.wustl.edu	36	3	48604189	48604189	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	3	48604189	48604189	C	T	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	silent	c.1428	p.P476	0.954	HMMPfam_fn3	HMMPfam_VWA,HMMPfam_Kunitz_BPTI,superfamily_BPTI-like,HMMPfam_fn3,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
SLC2A9	56606	genome.wustl.edu	36	4	9596452	9596452	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	4	9596452	9596452	C	T	SNP	SLC2A9	NM_020041	human	genbank	54_36p	-1	reviewed	silent	c.474	p.S158		NULL	-	-	no_errors
SIM1	6492	genome.wustl.edu	36	6	101002802	101002802	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	6	101002802	101002802	G	T	SNP	SIM1	NM_005068	human	genbank	54_36p	-1	reviewed	missense	c.791	p.T264N	1	HMMPfam_PAS_3	HMMPfam_HLH,HMMPfam_SIM_C,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
UTRN	7402	genome.wustl.edu	36	6	144848293	144848293	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	6	144848293	144848293	T	G	SNP	UTRN	NM_007124	human	genbank	54_36p	1	reviewed	missense	c.3767	p.M1256R	0.06	NULL	-	-	no_errors
PPP1R3A	5506	genome.wustl.edu	36	7	113346185	113346185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	7	113346185	113346185	G	A	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.103	p.P35S	1	NULL	HMMPfam_CBM_21	-	no_errors
THSD7A	221981	genome.wustl.edu	36	7	11642346	11642346	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	7	11642346	11642346	G	A	SNP	THSD7A	NM_015204	human	genbank	54_36p	-1	validated	nonsense	c.958	p.Q320*	1	NULL	-	-	no_errors
LOC653052	653052	genome.wustl.edu	36	7	139063067	139063067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	7	139063067	139063067	C	T	SNP	LOC653052	XM_925800	human	genbank	54_36p	-1	model	missense	c.253	p.V85I	1	NULL	-	-	no_errors
EPDR1	54749	genome.wustl.edu	36	7	37926788	37926800	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	7	37926788	37926800	AGGCAGTGGCAGC	-	DEL	EPDR1	NM_017549	human	genbank	54_36p	1	reviewed	frame_shift_del	c.82_94	p.Q31fs	0.083:0.084:0.084:0.084:0.084:0.084:0.083:0.082:0.080:0.077:0.074:0.070:0.065	NULL	-	(deletion:cds_exon[37926707;37927335])	no_errors
ADCY1	107	genome.wustl.edu	36	7	45684099	45684099	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	7	45684099	45684099	G	A	SNP	ADCY1	NM_021116	human	genbank	54_36p	1	reviewed	missense	c.1712	p.R571H	1	NULL	HMMPfam_Guanylate_cyc;superfamily_Adenylyl and guanylyl cyclase catalytic domain;superfamily_Voltage-gated potassium channels	-	no_errors
CYP11B1	1584	genome.wustl.edu	36	8	143957893	143957893	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	8	143957893	143957893	C	T	SNP	CYP11B1	ENST00000377675	human	ensembl	54_36p	-1	known	missense	c.245	p.R82Q		NULL	HMMPfam_p450;superfamily_Cytochrome_P450	-	no_errors
LOC100130134	100130134	genome.wustl.edu	36	X	89181291	89181291	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	X	89181291	89181291	A	G	SNP	LOC100130134	XR_037810	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
NTRK2	4915	genome.wustl.edu	36	9	86760151	86760151	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	9	86760151	86760151	C	T	SNP	NTRK2	NM_006180	human	genbank	54_36p	1	reviewed	missense	c.2071	p.R691C	1	HMMPfam_Pkinase_Tyr	LRRNT;HMMPfam_LRRNT;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;LRR_1;HMMPfam_LRR_1;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);I-set;HMMPfam_I-set;Immunoglobulin;superfamily_Immunoglobulin;L domain-like;superfamily_L domain-like	-	no_errors
MBTPS2	51360	genome.wustl.edu	36	X	21771329	21771329	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	X	21771329	21771329	C	T	SNP	MBTPS2	NM_015884	human	genbank	54_36p	1	validated	missense	c.196	p.R66W	1	NULL	superfamily_PDZ domain-like;HMMPfam_Peptidase_M50	-	no_errors
ARR3	407	genome.wustl.edu	36	X	69413276	69413276	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	62269d21-50dc-42b0-b1e4-75ed8010080a	79fa14ed-bc6b-444f-a2d0-b69ec117defd	X	69413276	69413276	C	T	SNP	ARR3	NM_004312	human	genbank	54_36p	1	validated	silent	c.438	p.F146	1	NULL	-	-	no_errors
