Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
C11orf42	160298	genome.wustl.edu	36	11	6188787	6188787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	11	6188787	6188787	G	A	SNP	C11orf42	NM_173525	human	genbank	54_36p	+1	predicted	missense	c.941	p.G314E	1.000	NULL	NULL	-	no_errors
TAS2R1	50834	genome.wustl.edu	36	5	9682690	9682690	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	5	9682690	9682690	A	G	SNP	TAS2R1	NM_019599	human	genbank	54_36p	-1	reviewed	missense	c.455	p.V152A	0.000	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
LOC729057	729057	genome.wustl.edu	36	22	14503724	14503724	+	RNA	SNP	C	C	T	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	22	14503724	14503724	C	T	SNP	LOC729057	XR_042044	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
KRAS	3845	genome.wustl.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	12	25289551	25289551	C	A	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12V	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
TMEM222	84065	genome.wustl.edu	36	1	27534517	27534517	+	Silent	SNP	C	T	T	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	1	27534517	27534517	C	T	SNP	TMEM222	NM_032125	human	genbank	54_36p	+1	validated	silent	c.600	p.T200	0.267	NULL	HMMPfam_DUF778	-	no_errors
NCR3	259197	genome.wustl.edu	36	6	31665635	31665635	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	6	31665635	31665635	G	C	SNP	NCR3	NM_147130	human	genbank	54_36p	-1	validated	missense	c.291	p.D97E	0.037	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors
DMD	1756	genome.wustl.edu	36	X	31803341	31803341	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	X	31803341	31803341	T	A	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	missense	c.6983	p.K2328I	0.956	superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors
DLGAP3	58512	genome.wustl.edu	36	1	35143338	35143338	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	1	35143338	35143338	C	T	SNP	DLGAP3	NM_001080418	human	genbank	54_36p	-1	provisional	silent	c.234	p.A78	0.414	NULL	HMMPfam_GKAP	-	no_errors
ZFP82	284406	genome.wustl.edu	36	19	41576919	41576919	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	19	41576919	41576919	T	C	SNP	ZFP82	ENST00000392171	human	ensembl	54_36p	-1	known	missense	c.163	p.T55A	0.000	HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DOK5	55816	genome.wustl.edu	36	20	52604926	52604926	+	Silent	SNP	T	T	C	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	20	52604926	52604926	T	C	SNP	DOK5	NM_018431	human	genbank	54_36p	+1	reviewed	silent	c.114	p.G38	0.965	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00310,HMMPfam_IRS	-	no_errors
JARID1C	8242	genome.wustl.edu	36	X	53238918	53238918	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	X	53238918	53238918	G	A	SNP	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	silent	c.4639	p.L1547	0.012	NULL	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1	-	no_errors
RB1CC1	9821	genome.wustl.edu	36	8	53732846	53732846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	8	53732846	53732846	G	A	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	missense	c.2096	p.T699M	1.000	NULL	superfamily_SSF54236,HMMPfam_ATG11	-	no_errors
MAGT1	84061	genome.wustl.edu	36	X	76999027	76999027	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	X	76999027	76999027	C	A	SNP	MAGT1	NM_032121	human	genbank	54_36p	-1	validated	splice_site	c.532-1	e5-1	1.000	-	-	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100471112	100471112	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	7	100471112	100471112	C	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	missense	c.9695	p.T3232M	0.013	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
KCNH7	90134	genome.wustl.edu	36	2	162944669	162944669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	2	162944669	162944669	C	T	SNP	KCNH7	NM_033272	human	genbank	54_36p	-1	reviewed	missense	c.3071	p.S1024N	1.000	NULL	superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
PDE10A	10846	genome.wustl.edu	36	6	165749717	165749717	+	Silent	SNP	T	T	C	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	6	165749717	165749717	T	C	SNP	PDE10A	NM_006661	human	genbank	54_36p	-1	validated	silent	c.1011	p.T337	0.995	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
COL4A4	1286	genome.wustl.edu	36	2	227623028	227623028	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	2	227623028	227623028	C	A	SNP	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	nonsense	c.3214	p.G1072*	1.000	HMMPfam_Collagen	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors
MT-CYB	4519	genome.wustl.edu	36	MT	15644	15661	+	In_Frame_Del	DEL	CATCCTAGCAATAATCCC	CATCCTAGCAATAATCCC	-	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	CATCCTAGCAATAATCCC	CATCCTAGCAATAATCCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	MT	15644	15661	CATCCTAGCAATAATCCC	-	DEL	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	in_frame_del	c.897_914	p.AMIPIL302in_frame_del	NULL	HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	superfamily_Transmembr_di-haem_cytochrome,HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	(deletion:cds_exon[14748,15882])	no_stop_codon:bad_bp_length_for_coding_region
NF1	4763	genome.wustl.edu	36	17	26510186	26510187	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-09-1664-01A-01W-0639-09	TCGA-09-1664-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8364585f-d532-4c26-9e0e-22cbfaeaf683	396c481e-d6ec-456f-a9dc-5740e9bfb22c	17	26510186	26510187	-	T	INS	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.237_238	p.Y79fs	0.988:1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
