Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ENSG00000210176	0	genome.wustl.edu	36	MT	12184	12184	+	RNA	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	MT	12184	12184	G	A	SNP	ENSG00000210176	ENST00000387441	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
MT-ND5	4540	genome.wustl.edu	36	MT	13635	13635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	MT	13635	13635	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1298	p.G433D	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
DEFB125	245938	genome.wustl.edu	36	20	24821	24821	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	20	24821	24821	A	G	SNP	DEFB125	NM_153325	human	genbank	54_36p	+1	reviewed	missense	c.234	p.I78M	0.000	NULL	NULL	-	no_errors
NEURL4	84461	genome.wustl.edu	36	17	7161537	7161537	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	17	7161537	7161537	G	A	SNP	NEURL4	NM_032442	human	genbank	54_36p	-1	validated	missense	c.4285	p.R1429W	1.000	NULL	HMMPfam_Neuralized,HMMSmart_SM00588	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517849	7517849	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	17	7517849	7517849	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.814	p.V272M	0.999	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ADCY2	108	genome.wustl.edu	36	5	7780290	7780290	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	5	7780290	7780290	C	A	SNP	ADCY2	NM_020546	human	genbank	54_36p	+1	reviewed	missense	c.1787	p.A596E	0.979	HMMPfam_DUF1053	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
ZNF627	199692	genome.wustl.edu	36	19	11589201	11589201	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	19	11589201	11589201	C	T	SNP	ZNF627	NM_145295	human	genbank	54_36p	+1	validated	nonsense	c.883	p.R295*	0.003	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MTMR7	9108	genome.wustl.edu	36	8	17204144	17204144	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	8	17204144	17204144	A	T	SNP	MTMR7	NM_004686	human	genbank	54_36p	-1	reviewed	missense	c.1510	p.Y504N	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
ENSG00000215604	0	genome.wustl.edu	36	13	17941911	17941911	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	13	17941911	17941911	C	A	SNP	ENSG00000215604	ENST00000342944	human	ensembl	54_36p	-1	known	missense	c.426	p.Q142H	0.740	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_stop_codon
GABPA	2551	genome.wustl.edu	36	21	26063278	26063278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	21	26063278	26063278	G	A	SNP	GABPA	NM_002040	human	genbank	54_36p	+1	validated	missense	c.1229	p.S410N	1.000	"superfamily_""Winged helix"" DNA-binding domain"	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26616395	26616395	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	17	26616395	26616395	G	T	SNP	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	nonsense	c.4747	p.E1583*	1.000	HMMSmart_SM00516	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
PDZD2	23037	genome.wustl.edu	36	5	32123586	32123586	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	5	32123586	32123586	G	A	SNP	PDZD2	NM_178140	human	genbank	54_36p	+1	reviewed	silent	c.4275	p.T1425	0.686	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
BIRC6	57448	genome.wustl.edu	36	2	32493836	32493836	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	2	32493836	32493836	A	T	SNP	BIRC6	NM_016252	human	genbank	54_36p	+1	reviewed	missense	c.1973	p.H658L	1.000	NULL	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors
ZNF536	9745	genome.wustl.edu	36	19	35730732	35730732	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	19	35730732	35730732	C	T	SNP	ZNF536	NM_014717	human	genbank	54_36p	+1	provisional	missense	c.2366	p.T789M	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CHD6	84181	genome.wustl.edu	36	20	39545386	39545386	+	Silent	SNP	T	T	C	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	20	39545386	39545386	T	C	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	silent	c.2445	p.L815	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40310740	40310740	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	20	40310740	40310740	C	T	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	splice_site	c.2369+1	e15+1	1.000	-	-	-	no_errors
DGKK	139189	genome.wustl.edu	36	X	50230125	50230125	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	X	50230125	50230125	G	A	SNP	DGKK	ENST00000376025	human	ensembl	54_36p	-1	known	missense	c.293	p.A98V	0.171	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
SPTBN1	6711	genome.wustl.edu	36	2	54710600	54710600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	2	54710600	54710600	C	T	SNP	SPTBN1	NM_003128	human	genbank	54_36p	+1	reviewed	missense	c.2737	p.R913C	0.440	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
DHRS7	51635	genome.wustl.edu	36	14	59689618	59689618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	14	59689618	59689618	G	A	SNP	DHRS7	NM_016029	human	genbank	54_36p	-1	validated	missense	c.425	p.S142F	0.084	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
ARID3B	10620	genome.wustl.edu	36	15	72670756	72670756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	15	72670756	72670756	C	T	SNP	ARID3B	NM_006465	human	genbank	54_36p	+1	reviewed	missense	c.1093	p.L365F	0.878	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
TNNI3K	51086	genome.wustl.edu	36	1	74607535	74607535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	1	74607535	74607535	C	T	SNP	TNNI3K	NM_015978	human	genbank	54_36p	+1	validated	missense	c.1471	p.R491C	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
C1orf173	127254	genome.wustl.edu	36	1	74810030	74810030	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	1	74810030	74810030	C	G	SNP	C1orf173	NM_001002912	human	genbank	54_36p	-1	predicted	missense	c.3952	p.G1318R	0.010	NULL	NULL	-	no_errors
GRIK2	2898	genome.wustl.edu	36	6	101953905	101953905	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	6	101953905	101953905	C	G	SNP	GRIK2	NM_021956	human	genbank	54_36p	+1	reviewed	missense	c.31	p.P11A	1.000	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
SORCS1	114815	genome.wustl.edu	36	10	108579385	108579385	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	10	108579385	108579385	A	C	SNP	SORCS1	NM_001013031	human	genbank	54_36p	-1	reviewed	missense	c.663	p.N221K	1.000	superfamily_SSF110296,HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD	-	no_errors
SEMA5B	54437	genome.wustl.edu	36	3	124117143	124117143	+	Silent	SNP	G	G	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	3	124117143	124117143	G	T	SNP	SEMA5B	NM_001031702	human	genbank	54_36p	-1	validated	silent	c.1822	p.R608	0.006	superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
IGSF9B	22997	genome.wustl.edu	36	11	133296301	133296301	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	11	133296301	133296301	G	A	SNP	IGSF9B	NM_014987	human	genbank	54_36p	-1	validated	silent	c.2529	p.A843	1.000	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3	-	no_errors
DUX1	26584	genome.wustl.edu	36	10	135341050	135341050	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	10	135341050	135341050	T	G	SNP	DUX1	NM_012146	human	genbank	54_36p	+1	provisional	missense	c.488	p.L163R	0.998	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_stop_codon
LOC729374	729374	genome.wustl.edu	36	1	149797021	149797021	+	RNA	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	1	149797021	149797021	G	A	SNP	LOC729374	XR_015991	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SH2D2A	9047	genome.wustl.edu	36	1	155045907	155045907	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	1	155045907	155045907	C	T	SNP	SH2D2A	NM_003975	human	genbank	54_36p	-1	provisional	splice_site	c.715-1	e7-1	0.002	-	-	-	no_errors
PIK3C2B	5287	genome.wustl.edu	36	1	202669599	202669599	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	1	202669599	202669599	T	C	SNP	PIK3C2B	NM_002646	human	genbank	54_36p	-1	reviewed	missense	c.3788	p.Q1263R	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2,superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00239,HMMPfam_C2	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208824508	208824508	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	2	208824508	208824508	T	C	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.13	p.I5V	1.000	superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	superfamily_Isocitrate/Isopropylmalate dehydrogenase-like,HMMPfam_Iso_dh,PatternScan_IDH_IMDH	-	no_errors
IL8RA	3577	genome.wustl.edu	36	2	218737382	218737382	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	2	218737382	218737382	G	A	SNP	IL8RA	NM_000634	human	genbank	54_36p	-1	reviewed	silent	c.798	p.T266	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR2T6	254879	genome.wustl.edu	36	1	246617734	246617734	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	1	246617734	246617734	G	A	SNP	OR2T6	NM_001005471	human	genbank	54_36p	+1	provisional	missense	c.202	p.V68I	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GNRH2	2797	genome.wustl.edu	36	20	2974345	2974346	+	Frame_Shift_Ins	INS	-	-	GCCCC	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	20	2974345	2974346	-	GCCCC	INS	GNRH2	NM_001501	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.326_327	p.P113fs	0.000:0.001	NULL	HMMPfam_GnRH,PatternScan_GNRH	-	no_errors
ELF3	1999	genome.wustl.edu	36	1	200250988	200250999	+	In_Frame_Del	DEL	CGGGTGGATGGC	CGGGTGGATGGC	-	novel	unknown	TCGA-09-1670-01A-01W-0633-09	TCGA-09-1670-10A-01W-0633-09	CGGGTGGATGGC	CGGGTGGATGGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ef89d6bf-9785-41e0-bb9f-511a74c1e98d	b3416895-f1b5-4617-891b-8525835ed9f1	1	200250988	200250999	CGGGTGGATGGC	-	DEL	ELF3	NM_004433	human	genbank	54_36p	+1	validated	in_frame_del	c.1030_1041	p.VDGR345in_frame_del	1.000:1.000:0.872:1.000:1.000:0.997:1.000:1.000:0.997:1.000:1.000:1.000	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	(deletion:cds_exon[200250960,200251074])	no_errors
