Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
CBWD1	55871	genome.wustl.edu	36	9	111503	111503	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	9	111503	111503	C	A	SNP	CBWD1	NM_018491	human	genbank	54_36p	-1	validated	missense	c.1152	p.W384C	0.042	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Hypothetical protein YjiA C-terminal domain	-	no_errors
BRD9	65980	genome.wustl.edu	36	5	937086	937086	+	Silent	SNP	C	C	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	5	937086	937086	C	A	SNP	BRD9	NM_023924	human	genbank	54_36p	-1	provisional	silent	c.645	p.R215	1.000	NULL	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain	-	no_errors
ARHGEF10	9639	genome.wustl.edu	36	8	1799963	1799963	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	8	1799963	1799963	G	C	SNP	ARHGEF10	NM_014629	human	genbank	54_36p	+1	reviewed	missense	c.499	p.E167Q	0.233	NULL	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,superfamily_WD40_like,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
PDYN	5173	genome.wustl.edu	36	20	1909118	1909118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	20	1909118	1909118	G	A	SNP	PDYN	NM_024411	human	genbank	54_36p	-1	reviewed	missense	c.616	p.R206C	1.000	NULL	HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR	-	no_errors
FBXO39	162517	genome.wustl.edu	36	17	6624668	6624668	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	17	6624668	6624668	A	G	SNP	FBXO39	NM_153230	human	genbank	54_36p	+1	validated	missense	c.757	p.T253A	0.999	superfamily_SSF52047	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
FAM38B	63895	genome.wustl.edu	36	18	10662706	10662706	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	18	10662706	10662706	C	G	SNP	FAM38B	NM_022068	human	genbank	54_36p	-1	predicted	missense	c.1363	p.G455R	1.000	NULL	NULL	-	no_errors
SCML2	10389	genome.wustl.edu	36	X	18174817	18174817	+	Silent	SNP	T	T	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	X	18174817	18174817	T	C	SNP	SCML2	NM_006089	human	genbank	54_36p	-1	validated	silent	c.1623	p.S541	0.986	NULL	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
OR4Q3	441669	genome.wustl.edu	36	14	19286172	19286172	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	14	19286172	19286172	G	A	SNP	OR4Q3	NM_172194	human	genbank	54_36p	+1	provisional	missense	c.746	p.S249N	0.939	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SNRPN	6638	genome.wustl.edu	36	15	22773217	22773217	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	15	22773217	22773217	C	G	SNP	SNRPN	NM_003097	human	genbank	54_36p	+1	reviewed	missense	c.368	p.A123G	1.000	NULL	superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651	-	no_errors
ABI1	10006	genome.wustl.edu	36	10	27084659	27084659	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	10	27084659	27084659	G	A	SNP	ABI1	NM_005470	human	genbank	54_36p	-1	reviewed	missense	c.1096	p.P366S	1.000	NULL	HMMPfam_Abi_HHR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
N4BP2L1	90634	genome.wustl.edu	36	13	31875286	31875286	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	13	31875286	31875286	C	A	SNP	N4BP2L1	NM_001079691	human	genbank	54_36p	-1	validated	missense	c.517	p.V173L	1.000	NULL	superfamily_SSF52540	-	no_errors
TBC1D1	23216	genome.wustl.edu	36	4	37793902	37793902	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	4	37793902	37793902	A	G	SNP	TBC1D1	NM_015173	human	genbank	54_36p	+1	validated	missense	c.2734	p.M912V	1.000	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_LECTIN_LEGUME_BETA,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
NHLRC3	387921	genome.wustl.edu	36	13	38516257	38516257	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	13	38516257	38516257	A	G	SNP	NHLRC3	NM_001012754	human	genbank	54_36p	+1	validated	missense	c.617	p.N206S	0.997	superfamily_SSF101898	superfamily_SSF101898,HMMPfam_NHL	-	no_errors
NGFR	4804	genome.wustl.edu	36	17	44938823	44938823	+	Silent	SNP	G	A	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	17	44938823	44938823	G	A	SNP	NGFR	NM_002507	human	genbank	54_36p	+1	reviewed	silent	c.372	p.A124	0.758	superfamily_TNF receptor-like,PatternScan_TNFR_NGFR_1,HMMPfam_TNFR_c6,HMMSmart_SM00208	PatternScan_LIPASE_SER,superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
OR13A1	79290	genome.wustl.edu	36	10	45119344	45119344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	10	45119344	45119344	G	A	SNP	OR13A1	NM_001004297	human	genbank	54_36p	-1	validated	missense	c.533	p.T178M	0.047	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MRO	83876	genome.wustl.edu	36	18	46581831	46581831	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	18	46581831	46581831	C	T	SNP	MRO	NM_031939	human	genbank	54_36p	-1	reviewed	silent	c.471	p.G157	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
KRT2	3849	genome.wustl.edu	36	12	51331702	51331702	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	12	51331702	51331702	G	A	SNP	KRT2	NM_000423	human	genbank	54_36p	-1	reviewed	silent	c.492	p.N164	0.028	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
MMP2	4313	genome.wustl.edu	36	16	54089791	54089791	+	Silent	SNP	C	C	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	16	54089791	54089791	C	A	SNP	MMP2	NM_004530	human	genbank	54_36p	+1	reviewed	silent	c.1699	p.R567	0.016	superfamily_Hemopexin	superfamily_PGBD_like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Peptidase_M10,superfamily_Kringle-like,HMMSmart_FN2,HMMPfam_fn2,PatternScan_FN2_1,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors
CCDC46	201134	genome.wustl.edu	36	17	61169701	61169701	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	17	61169701	61169701	T	G	SNP	CCDC46	NM_145036	human	genbank	54_36p	-1	validated	missense	c.2554	p.K852Q	0.973	NULL	NULL	-	no_errors
FAM19A1	407738	genome.wustl.edu	36	3	68549182	68549182	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	3	68549182	68549182	C	T	SNP	FAM19A1	NM_213609	human	genbank	54_36p	+1	reviewed	missense	c.181	p.R61W	1.000	NULL	NULL	-	no_errors
FOXO4	4303	genome.wustl.edu	36	X	70237455	70237455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	X	70237455	70237455	C	T	SNP	FOXO4	NM_005938	human	genbank	54_36p	+1	validated	missense	c.650	p.S217F	0.004	NULL	"HMMPfam_Fork_head,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00339,PatternScan_FORK_HEAD_2"	-	no_errors
NEIL1	79661	genome.wustl.edu	36	15	73434198	73434198	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	15	73434198	73434198	G	A	SNP	NEIL1	NM_024608	human	genbank	54_36p	+1	validated	missense	c.1088	p.R363Q	0.000	NULL	superfamily_N-terminal domain of MutM-like DNA repair proteins,HMMPfam_Fapy_DNA_glyco,superfamily_S13-like H2TH domain,HMMPfam_H2TH,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_Neil1-DNA_bind	-	no_errors
ATP9B	374868	genome.wustl.edu	36	18	75037834	75037834	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	18	75037834	75037834	G	T	SNP	ATP9B	NM_198531	human	genbank	54_36p	+1	validated	missense	c.812	p.G271V	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
TSPAN10	83882	genome.wustl.edu	36	17	77225356	77225356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	17	77225356	77225356	C	T	SNP	TSPAN10	ENST00000328585	human	ensembl	54_36p	+1	known	missense	c.695	p.P232L	0.404	HMMPfam_Tetraspannin,superfamily_Tetraspanin	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-	no_errors
LIPN	643418	genome.wustl.edu	36	10	90516043	90516043	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	10	90516043	90516043	A	G	SNP	LIPN	NM_001102469	human	genbank	54_36p	+1	validated	missense	c.463	p.I155V	0.998	superfamily_SSF53474,HMMPfam_Abhydrolase_1	HMMPfam_Abhydro_lipase,superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_LIPASE_SER	-	no_errors
ALDOB	229	genome.wustl.edu	36	9	103226954	103226954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	9	103226954	103226954	G	A	SNP	ALDOB	NM_000035	human	genbank	54_36p	-1	reviewed	missense	c.991	p.R331W	1.000	superfamily_Aldolase,HMMPfam_Glycolytic	superfamily_Aldolase,HMMPfam_Glycolytic,PatternScan_ALDOLASE_CLASS_I	-	no_errors
LAMB1	3912	genome.wustl.edu	36	7	107363275	107363275	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	7	107363275	107363275	C	A	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.4009	p.A1337S	1.000	NULL	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_Prefoldin	-	no_errors
SCML4	256380	genome.wustl.edu	36	6	108183489	108183489	+	Silent	SNP	G	G	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	6	108183489	108183489	G	C	SNP	SCML4	NM_198081	human	genbank	54_36p	-1	validated	silent	c.48	p.T16	0.003	NULL	NULL	-	no_errors
GUCY2F	2986	genome.wustl.edu	36	X	108522919	108522919	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	X	108522919	108522919	T	C	SNP	GUCY2F	NM_001522	human	genbank	54_36p	-1	reviewed	missense	c.2446	p.K816E	0.994	superfamily_Protein kinase-like (PK-like)	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
DRD2	1813	genome.wustl.edu	36	11	112791426	112791426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	11	112791426	112791426	C	T	SNP	DRD2	NM_000795	human	genbank	54_36p	-1	reviewed	missense	c.650	p.R217H	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GLUD2	2747	genome.wustl.edu	36	X	120009760	120009760	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	X	120009760	120009760	G	C	SNP	GLUD2	NM_012084	human	genbank	54_36p	+1	validated	missense	c.541	p.G181R	1.000	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	-	no_errors
CADPS2	93664	genome.wustl.edu	36	7	122090841	122090841	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	7	122090841	122090841	G	A	SNP	CADPS2	NM_017954	human	genbank	54_36p	-1	validated	nonsense	c.472	p.R158*	1.000	NULL	HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041	-	no_errors
ENSG00000209322	0	genome.wustl.edu	36	4	123072419	123072419	+	RNA	SNP	T	C	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	4	123072419	123072419	T	C	SNP	ENSG00000209322	ENST00000386587	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.006	-	-	-	pseudogene
WASL	8976	genome.wustl.edu	36	7	123134061	123134061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	7	123134061	123134061	G	A	SNP	WASL	NM_003941	human	genbank	54_36p	-1	reviewed	missense	c.308	p.P103L	1.000	superfamily_SSF50729,HMMPfam_WH1,HMMSmart_WH1	superfamily_SSF50729,HMMPfam_WH1,HMMSmart_WH1,HMMPfam_PBD,HMMSmart_PBD,superfamily_WASP_C,HMMPfam_WH2,HMMSmart_WH2	-	no_errors
ENOX2	10495	genome.wustl.edu	36	X	129589692	129589692	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	X	129589692	129589692	A	C	SNP	ENOX2	NM_182314	human	genbank	54_36p	-1	reviewed	missense	c.1622	p.I541S	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
LAMC3	10319	genome.wustl.edu	36	9	132904255	132904255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	9	132904255	132904255	C	T	SNP	LAMC3	NM_006059	human	genbank	54_36p	+1	reviewed	missense	c.1160	p.S387L	0.848	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Laminin_B,PatternScan_EGF_2	-	no_errors
LOC389827	389827	genome.wustl.edu	36	9	135369596	135369596	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	9	135369596	135369596	A	C	SNP	LOC389827	NM_001080483	human	genbank	54_36p	-1	inferred	missense	c.649	p.C217G	1.000	NULL	NULL	-	no_errors
PDE7B	27115	genome.wustl.edu	36	6	136541962	136541962	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	6	136541962	136541962	T	A	SNP	PDE7B	NM_018945	human	genbank	54_36p	+1	validated	missense	c.938	p.F313Y	1.000	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
FMR1	2332	genome.wustl.edu	36	X	146837974	146837974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	X	146837974	146837974	G	A	SNP	FMR1	NM_002024	human	genbank	54_36p	+1	reviewed	missense	c.1817	p.R606H	1.000	NULL	HMMPfam_Agenet,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors
SSPO	23145	genome.wustl.edu	36	7	149148974	149148974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	7	149148974	149148974	C	T	SNP	SSPO	NM_198455	human	genbank	54_36p	+1	provisional	missense	c.12397	p.P4133S	0.997	NULL	HMMSmart_SM00216,HMMPfam_VWD,superfamily_LDL receptor-like module,HMMSmart_SM00192,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Serine proterase inhibitors,HMMSmart_SM00214,HMMSmart_SM00215,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,HMMPfam_Ldl_recept_a,PatternScan_LDLRA_1,HMMPfam_TIL,superfamily_PMP inhibitors,PatternScan_EGF_1,PatternScan_VWFC_1,PatternScan_GLYCO_HORMONE_BETA_1	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FLG	2312	genome.wustl.edu	36	1	150544358	150544358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	1	150544358	150544358	G	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.9628	p.R3210C	0.000	HMMPfam_Filaggrin	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179104743	179104743	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	2	179104743	179104743	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.92788	p.R30930C	1.000	superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
OR2T12	127064	genome.wustl.edu	36	1	246525465	246525465	+	Silent	SNP	T	T	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	1	246525465	246525465	T	C	SNP	OR2T12	NM_001004692	human	genbank	54_36p	-1	provisional	silent	c.39	p.L13	0.026	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HDGF2	84717	genome.wustl.edu	36	19	4450633	4450647	+	In_Frame_Del	DEL	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG	-	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	AGCTGGCCGGGGAGG	AGCTGGCCGGGGAGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	19	4450633	4450647	AGCTGGCCGGGGAGG	-	DEL	HDGF2	NM_001001520	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1721_1735	p.EELAG578in_frame_del	0.738:0.694:0.651:0.608:0.566:0.525:0.484:0.443:0.404:0.364:0.325:0.287:0.249:0.211:0.173	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293	(deletion:cds_exon[4450488,4450716])	no_errors
CRKRS	51755	genome.wustl.edu	36	17	34872878	34872910	+	Frame_Shift_Del	DEL	GTCGGAGTCCACTCCCCAGGTGAGCTATTTGTC	GTCGGAGTCCACTCCCCAGGTGAGCTATTTGTC	-	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	GTCGGAGTCCACTCCCCAGGTGAGCTATTTGTC	GTCGGAGTCCACTCCCCAGGTGAGCTATTTGTC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	17	34872878	34872910	GTCGGAGTCCACTCCCCAGGTGAGCTATTTGTC	-	DEL	CRKRS	NM_016507	human	genbank	54_36p	+1	validated	frame_shift_del	c.1028_1046	p.S343fs	1.000:0.994:1.000:1.000:1.000:1.000:1.000:0.998:1.000:0.990:0.034:0.033:0.016:0.007:0.063:0.894:0.996:1.000:1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[34871851,34872896], intron[34872897,34880657])	no_errors
CEP164	22897	genome.wustl.edu	36	11	116757696	116757697	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	11	116757696	116757697	-	C	INS	CEP164	NM_014956	human	genbank	54_36p	+1	validated	frame_shift_ins	c.1479_1480	p.P494fs	0.077:0.074	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW	-	no_errors
GLUD2	2747	genome.wustl.edu	36	X	120009756	120009759	+	Frame_Shift_Del	DEL	TGGG	TGGG	-	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	TGGG	TGGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	X	120009756	120009759	TGGG	-	DEL	GLUD2	NM_012084	human	genbank	54_36p	+1	validated	frame_shift_del	c.537_540	p.F179fs	0.999:1.000:1.000:0.996	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	(deletion:cds_exon[120009220,120010896])	no_errors
GRM6	2916	genome.wustl.edu	36	5	178351885	178351886	+	Frame_Shift_Ins	INS	-	-	GGCAAGGTCT	novel	unknown	TCGA-09-1673-01A-01W-0633-09	TCGA-09-1673-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5a9e62ac-f098-418d-b84b-ddb219fc2971	3a066fa6-7430-405f-958e-7713c124c285	5	178351885	178351886	-	GGCAAGGTCT	INS	GRM6	ENST00000319065	human	ensembl	54_36p	-1	known	frame_shift_ins	c.154_153	p.H51fs	0.003:0.016	NULL	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_stop_codon
