Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ATP6	4508	genome.wustl.edu	36	MT	8731	8731	+	Silent	SNP	A	G	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	MT	8731	8731	A	G	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	silent	c.204	p.W68	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	-	no_errors
CNTN6	27255	genome.wustl.edu	36	3	1402457	1402457	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	1402457	1402457	G	A	SNP	CNTN6	NM_014461	human	genbank	54_36p	+1	reviewed	missense	c.2680	p.V894I	0.997	superfamily_FN_III-like	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
ENSG00000185986	0	genome.wustl.edu	36	5	1627405	1627405	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	1627405	1627405	C	G	SNP	ENSG00000185986	ENST00000354559	human	ensembl	54_36p	-1	known	missense	c.246	p.Q82H	0.989	HMMPfam_Succ_DH_flav_C,superfamily_Succ_DH_flav_C	HMMPfam_Succ_DH_flav_C,superfamily_Succ_DH_flav_C	-	no_errors
SGSM2	9905	genome.wustl.edu	36	17	2211725	2211725	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	17	2211725	2211725	G	T	SNP	SGSM2	NM_014853	human	genbank	54_36p	+1	validated	missense	c.178	p.A60S	1.000	HMMPfam_RUN	HMMPfam_RUN,HMMSmart_RUN,superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-	no_errors
EIF3B	8662	genome.wustl.edu	36	7	2369866	2369866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	2369866	2369866	G	A	SNP	EIF3B	NM_001037283	human	genbank	54_36p	+1	validated	missense	c.944	p.R315H	1.000	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_eIF2A	-	no_errors
THOC6	79228	genome.wustl.edu	36	16	3017646	3017646	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	16	3017646	3017646	C	G	SNP	THOC6	NM_024339	human	genbank	54_36p	+1	validated	missense	c.1013	p.S338C	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ZNF213	7760	genome.wustl.edu	36	16	3129055	3129055	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	16	3129055	3129055	C	G	SNP	ZNF213	NM_004220	human	genbank	54_36p	+1	validated	missense	c.676	p.L226V	1.000	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RFX3	5991	genome.wustl.edu	36	9	3253047	3253047	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	9	3253047	3253047	C	G	SNP	RFX3	NM_134428	human	genbank	54_36p	-1	reviewed	missense	c.1493	p.R498T	1.000	NULL	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
KCNA5	3741	genome.wustl.edu	36	12	5024724	5024724	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	5024724	5024724	G	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	+1	reviewed	missense	c.1150	p.G384R	0.016	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
ALG1	56052	genome.wustl.edu	36	16	5065432	5065432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	16	5065432	5065432	G	A	SNP	ALG1	NM_019109	human	genbank	54_36p	+1	reviewed	missense	c.433	p.G145S	0.964	superfamily_SSF53756	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors
USP42	84132	genome.wustl.edu	36	7	6149157	6149157	+	Silent	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	6149157	6149157	G	C	SNP	USP42	ENST00000404835	human	ensembl	54_36p	+1	known	silent	c.864	p.S288	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors
CHD4	1108	genome.wustl.edu	36	12	6580434	6580434	+	Silent	SNP	A	A	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	6580434	6580434	A	G	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	silent	c.846	p.D282	0.985	NULL	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,PatternScan_CHROMO_1,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
FOXJ2	55810	genome.wustl.edu	36	12	8096673	8096673	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	8096673	8096673	A	T	SNP	FOXJ2	NM_018416	human	genbank	54_36p	+1	validated	missense	c.1685	p.E562V	1.000	NULL	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
ENSG00000205959	0	genome.wustl.edu	36	4	8563070	8563070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	4	8563070	8563070	C	T	SNP	ENSG00000205959	ENST00000382488	human	ensembl	54_36p	+1	known	silent	c.693	p.P231	0.000	NULL	NULL	-	no_errors
CPZ	8532	genome.wustl.edu	36	4	8656648	8656648	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	4	8656648	8656648	C	T	SNP	CPZ	NM_001014447	human	genbank	54_36p	+1	reviewed	missense	c.542	p.T181I	0.066	superfamily_Zn-dependent exopeptidases	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
TARDBP	23435	genome.wustl.edu	36	1	11004786	11004786	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	11004786	11004786	G	T	SNP	TARDBP	NM_007375	human	genbank	54_36p	+1	reviewed	nonsense	c.733	p.G245*	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
ZNF44	51710	genome.wustl.edu	36	19	12245464	12245464	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	19	12245464	12245464	A	C	SNP	ZNF44	NM_016264	human	genbank	54_36p	-1	provisional	missense	c.606	p.C202W	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NBAS	51594	genome.wustl.edu	36	2	15334445	15334445	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	15334445	15334445	C	T	SNP	NBAS	NM_015909	human	genbank	54_36p	-1	validated	silent	c.5370	p.K1790	0.991	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
ELA2A	63036	genome.wustl.edu	36	1	15656215	15656215	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	15656215	15656215	G	T	SNP	ELA2A	NM_033440	human	genbank	54_36p	+1	reviewed	missense	c.88	p.V30F	0.999	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
RDH14	57665	genome.wustl.edu	36	2	18600493	18600493	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	18600493	18600493	C	G	SNP	RDH14	NM_020905	human	genbank	54_36p	-1	validated	missense	c.456	p.K152N	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors
MRTO4	51154	genome.wustl.edu	36	1	19456595	19456595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	19456595	19456595	G	A	SNP	MRTO4	NM_016183	human	genbank	54_36p	+1	reviewed	missense	c.334	p.V112M	1.000	HMMPfam_Ribosomal_L10	HMMPfam_Ribosomal_L10	-	no_errors
KIAA1967	57805	genome.wustl.edu	36	8	22519593	22519593	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	8	22519593	22519593	C	T	SNP	KIAA1967	NM_021174	human	genbank	54_36p	+1	validated	missense	c.109	p.P37S	1.000	NULL	NULL	-	no_errors
AP1G2	8906	genome.wustl.edu	36	14	23106246	23106246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	14	23106246	23106246	G	A	SNP	AP1G2	NM_003917	human	genbank	54_36p	-1	reviewed	missense	c.118	p.R40C	1.000	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2	-	no_errors
PALB2	79728	genome.wustl.edu	36	16	23553870	23553870	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	16	23553870	23553870	A	G	SNP	PALB2	NM_024675	human	genbank	54_36p	-1	reviewed	missense	c.1498	p.S500P	0.000	NULL	PatternScan_WD_REPEATS_1,superfamily_WD40_like	-	no_errors
NLP	22981	genome.wustl.edu	36	20	25407747	25407747	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	20	25407747	25407747	C	T	SNP	NLP	NM_025176	human	genbank	54_36p	-1	validated	silent	c.2013	p.V671	0.783	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
HIST1H1E	3008	genome.wustl.edu	36	6	26264779	26264779	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	26264779	26264779	C	A	SNP	HIST1H1E	NM_005321	human	genbank	54_36p	+1	reviewed	missense	c.182	p.A61D	1.000	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00526,HMMPfam_Linker_histone"	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00526,HMMPfam_Linker_histone"	-	no_errors
KIF13B	23303	genome.wustl.edu	36	8	29032371	29032371	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	8	29032371	29032371	G	T	SNP	KIF13B	NM_015254	human	genbank	54_36p	-1	validated	missense	c.3593	p.A1198E	1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
TRPM1	4308	genome.wustl.edu	36	15	29121699	29121699	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	15	29121699	29121699	T	C	SNP	TRPM1	NM_002420	human	genbank	54_36p	-1	reviewed	missense	c.1768	p.K590E	1.000	NULL	HMMPfam_Ion_trans	-	no_errors
KLF13	51621	genome.wustl.edu	36	15	29451664	29451664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	15	29451664	29451664	C	T	SNP	KLF13	NM_015995	human	genbank	54_36p	+1	validated	missense	c.737	p.A246V	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
SCRN1	9805	genome.wustl.edu	36	7	29946871	29946871	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	29946871	29946871	C	G	SNP	SCRN1	NM_014766	human	genbank	54_36p	-1	reviewed	missense	c.691	p.D231H	1.000	NULL	NULL	-	no_errors
FBXO7	25793	genome.wustl.edu	36	22	31205251	31205251	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	22	31205251	31205251	G	T	SNP	FBXO7	NM_012179	human	genbank	54_36p	+1	reviewed	missense	c.406	p.D136Y	0.016	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX	-	no_errors
PDE1C	5137	genome.wustl.edu	36	7	31844103	31844103	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	31844103	31844103	G	C	SNP	PDE1C	NM_005020	human	genbank	54_36p	-1	provisional	missense	c.988	p.R330G	1.000	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I	HMMPfam_PDEase_I_N,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32288889	32288889	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	32288889	32288889	C	T	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	splice_site	c.2438+1	e15+1	0.843	-	-	-	no_errors
LOC100131609	0	genome.wustl.edu	36	6	32401962	32401962	+	RNA	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	32401962	32401962	G	A	SNP	LOC100131609	XR_039222	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
C10orf68	79741	genome.wustl.edu	36	10	33175320	33175320	+	Silent	SNP	A	A	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	10	33175320	33175320	A	G	SNP	C10orf68	NM_024688	human	genbank	54_36p	+1	validated	silent	c.1344	p.K448	0.001	NULL	NULL	-	no_errors
LOC401847	401847	genome.wustl.edu	36	16	33513022	33513022	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	16	33513022	33513022	C	A	SNP	LOC401847	XM_001718104	human	genbank	54_36p	+1	model	missense	c.826	p.L276M	0.997	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_errors
ALG10	84920	genome.wustl.edu	36	12	34070354	34070354	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	34070354	34070354	T	C	SNP	ALG10	NM_032834	human	genbank	54_36p	+1	validated	missense	c.659	p.L220P	0.024	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors
C9orf131	138724	genome.wustl.edu	36	9	35034783	35034783	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	9	35034783	35034783	C	T	SNP	C9orf131	NM_203299	human	genbank	54_36p	+1	validated	silent	c.2157	p.S719	0.065	NULL	NULL	-	no_errors
LOC728707	728707	genome.wustl.edu	36	5	37541531	37541531	+	RNA	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	37541531	37541531	C	T	SNP	LOC728707	XR_015588	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.042	-	-	-	pseudogene
RUNDC1	146923	genome.wustl.edu	36	17	38396827	38396827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	17	38396827	38396827	G	A	SNP	RUNDC1	NM_173079	human	genbank	54_36p	+1	validated	missense	c.1410	p.M470I	1.000	HMMPfam_RUN	HMMPfam_RUN,HMMSmart_SM00593	-	no_errors
SH3BGR	6450	genome.wustl.edu	36	21	39805568	39805568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	21	39805568	39805568	C	T	SNP	SH3BGR	NM_007341	human	genbank	54_36p	+1	validated	missense	c.716	p.S239F	0.750	NULL	superfamily_Thiordxn-like_fd,HMMPfam_SH3BGR	-	no_errors
TTC17	55761	genome.wustl.edu	36	11	43468373	43468373	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	11	43468373	43468373	G	A	SNP	TTC17	NM_018259	human	genbank	54_36p	+1	provisional	silent	c.3039	p.T1013	0.035	superfamily_SSF48452	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors
NFE2L1	4779	genome.wustl.edu	36	17	43491558	43491558	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	17	43491558	43491558	C	T	SNP	NFE2L1	NM_003204	human	genbank	54_36p	+1	validated	silent	c.1875	p.F625	1.000	superfamily_A DNA-binding domain in eukaryotic transcription factors	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_2,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors
LOC553158	553158	genome.wustl.edu	36	22	43589254	43589254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	22	43589254	43589254	C	T	SNP	LOC553158	NM_181334	human	genbank	54_36p	+1	reviewed	missense	c.446	p.P149L	1.000	superfamily_CRAL_TRIO_C,HMMSmart_SEC14	superfamily_CRAL_TRIO_C,HMMSmart_SEC14,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
ZNF197	10168	genome.wustl.edu	36	3	44658804	44658804	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	44658804	44658804	C	G	SNP	ZNF197	NM_006991	human	genbank	54_36p	+1	reviewed	missense	c.1178	p.T393S	0.936	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
PRX	57716	genome.wustl.edu	36	19	45594215	45594215	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	19	45594215	45594215	C	A	SNP	PRX	NM_181882	human	genbank	54_36p	-1	reviewed	missense	c.1884	p.E628D	0.000	NULL	HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228	-	no_errors
EGLN2	112398	genome.wustl.edu	36	19	46004925	46004925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	19	46004925	46004925	G	A	SNP	EGLN2	NM_053046	human	genbank	54_36p	+1	reviewed	missense	c.1006	p.V336M	0.990	HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-	no_errors
SETD2	29072	genome.wustl.edu	36	3	47073689	47073689	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	47073689	47073689	C	G	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	missense	c.5080	p.V1694L	1.000	NULL	superfamily_Ferritin/RR_like,superfamily_SSF82199,HMMSmart_AWS,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_SRI_2	-	no_errors
GPR110	266977	genome.wustl.edu	36	6	47085854	47085854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	47085854	47085854	G	A	SNP	GPR110	NM_153840	human	genbank	54_36p	-1	validated	missense	c.1276	p.R426W	0.000	NULL	superfamily_SEA domain,HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
CALM2	805	genome.wustl.edu	36	2	47242931	47242931	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	47242931	47242931	T	C	SNP	CALM2	NM_001743	human	genbank	54_36p	-1	provisional	missense	c.283	p.K95E	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
KLRAQ1	129285	genome.wustl.edu	36	2	48555333	48555333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	48555333	48555333	G	A	SNP	KLRAQ1	NM_152994	human	genbank	54_36p	+1	validated	missense	c.1096	p.E366K	1.000	HMMPfam_TTKRSYEDQ	HMMPfam_KLRAQ,HMMPfam_TTKRSYEDQ	-	no_errors
GPD1	2819	genome.wustl.edu	36	12	48786952	48786952	+	Silent	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	48786952	48786952	C	A	SNP	GPD1	NM_005276	human	genbank	54_36p	+1	provisional	silent	c.597	p.I199	1.000	HMMPfam_NAD_Gly3P_dh_C,superfamily_6DGDH_C_like	superfamily_NAD(P)-bd,HMMPfam_NAD_Gly3P_dh_N,HMMPfam_NAD_Gly3P_dh_C,superfamily_6DGDH_C_like,PatternScan_NAD_G3PDH	-	no_errors
CRISP3	10321	genome.wustl.edu	36	6	49812123	49812123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	49812123	49812123	C	T	SNP	CRISP3	NM_006061	human	genbank	54_36p	-1	provisional	silent	c.129	p.V43	0.951	superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP	superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP,PatternScan_CRISP_1,PatternScan_CRISP_2,HMMPfam_Crisp	-	no_errors
MST1R	4486	genome.wustl.edu	36	3	49899853	49899853	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	49899853	49899853	G	T	SNP	MST1R	NM_002447	human	genbank	54_36p	-1	validated	missense	c.4094	p.P1365H	0.925	superfamily_Protein kinase-like (PK-like)	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,superfamily_Plexin repeat,HMMPfam_PSI,HMMSmart_SM00423,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
OR4C13	283092	genome.wustl.edu	36	11	49930737	49930737	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	11	49930737	49930737	T	C	SNP	OR4C13	NM_001001955	human	genbank	54_36p	+1	provisional	missense	c.187	p.Y63H	0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LOC130728	130728	genome.wustl.edu	36	2	49959609	49959609	+	RNA	SNP	A	A	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	49959609	49959609	A	G	SNP	LOC130728	XR_017361	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
PKHD1	5314	genome.wustl.edu	36	6	51632396	51632396	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	51632396	51632396	A	C	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.10487	p.L3496W	0.611	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
TMEM14A	28978	genome.wustl.edu	36	6	52654651	52654651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	52654651	52654651	G	A	SNP	TMEM14A	NM_014051	human	genbank	54_36p	+1	validated	missense	c.152	p.R51Q	0.989	HMMPfam_Tmemb_14	HMMPfam_Tmemb_14	-	no_errors
PLEKHA4	57664	genome.wustl.edu	36	19	54054661	54054661	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	19	54054661	54054661	C	T	SNP	PLEKHA4	NM_020904	human	genbank	54_36p	-1	provisional	missense	c.569	p.R190H	0.015	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
SILV	6490	genome.wustl.edu	36	12	54641752	54641752	+	Silent	SNP	T	T	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	54641752	54641752	T	G	SNP	SILV	NM_006928	human	genbank	54_36p	-1	validated	silent	c.108	p.S36	0.979	NULL	superfamily_PKD domain,HMMPfam_PKD,HMMSmart_SM00089	-	no_errors
HCRTR2	3062	genome.wustl.edu	36	6	55221496	55221496	+	Silent	SNP	T	T	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	55221496	55221496	T	G	SNP	HCRTR2	NM_001526	human	genbank	54_36p	+1	reviewed	silent	c.324	p.L108	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_Orexin_rec2	-	no_errors
ZNF83	55769	genome.wustl.edu	36	19	57809433	57809433	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	19	57809433	57809433	T	C	SNP	ZNF83	NM_001105549	human	genbank	54_36p	-1	validated	missense	c.197	p.H66R	0.003	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PHACTR3	116154	genome.wustl.edu	36	20	57814502	57814502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	20	57814502	57814502	C	T	SNP	PHACTR3	NM_080672	human	genbank	54_36p	+1	reviewed	missense	c.1186	p.R396W	0.957	NULL	HMMSmart_SM00707,HMMPfam_RPEL	-	no_errors
ERN1	2081	genome.wustl.edu	36	17	59476501	59476501	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	17	59476501	59476501	G	T	SNP	ERN1	NM_001433	human	genbank	54_36p	-1	reviewed	missense	c.2603	p.A868D	0.912	HMMPfam_Ribonuc_2-5A	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_errors
KHDRBS2	202559	genome.wustl.edu	36	6	62746032	62746032	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	6	62746032	62746032	C	G	SNP	KHDRBS2	NM_152688	human	genbank	54_36p	-1	validated	missense	c.381	p.L127F	1.000	HMMSmart_KH,superfamily_SSF54791	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-	no_errors
ZNF551	90233	genome.wustl.edu	36	19	62889711	62889711	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	19	62889711	62889711	T	C	SNP	ZNF551	NM_138347	human	genbank	54_36p	+1	validated	missense	c.208	p.S70P	0.071	HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
EDC4	23644	genome.wustl.edu	36	16	66473479	66473479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	16	66473479	66473479	C	A	SNP	EDC4	NM_014329	human	genbank	54_36p	+1	validated	missense	c.3126	p.S1042R	0.590	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
HEXA	3073	genome.wustl.edu	36	15	70428576	70428576	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	15	70428576	70428576	T	C	SNP	HEXA	NM_000520	human	genbank	54_36p	-1	reviewed	missense	c.884	p.N295S	0.981	HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases	superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases	-	no_errors
CARD14	79092	genome.wustl.edu	36	17	75783969	75783969	+	Missense_Mutation	SNP	C	T	T	rs61751630	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	17	75783969	75783969	C	T	SNP	CARD14	NM_024110	human	genbank	54_36p	+1	reviewed	missense	c.1517	p.P506L	0.006	NULL	superfamily_DEATH domain,HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77780592	77780592	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	8	77780592	77780592	G	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	+1	validated	missense	c.1714	p.A572S	0.856	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
CSNK1D	1453	genome.wustl.edu	36	17	77806636	77806636	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	17	77806636	77806636	C	A	SNP	CSNK1D	NM_001893	human	genbank	54_36p	-1	reviewed	missense	c.294	p.R98S	0.988	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
POU4F1	5457	genome.wustl.edu	36	13	78073779	78073779	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	13	78073779	78073779	C	G	SNP	POU4F1	NM_006237	human	genbank	54_36p	-1	validated	missense	c.1032	p.M344I	1.000	superfamily_Homeodomain-like	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79066188	79066188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	79066188	79066188	G	A	SNP	CMYA5	NM_153610	human	genbank	54_36p	+1	validated	silent	c.5844	p.P1948	0.000	NULL	superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY	-	no_errors
LOC728979	728979	genome.wustl.edu	36	5	86215942	86215942	+	RNA	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	86215942	86215942	G	A	SNP	LOC728979	XR_015799	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
RGPD2	729857	genome.wustl.edu	36	2	87852941	87852941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	87852941	87852941	C	T	SNP	RGPD2	NM_001078170	human	genbank	54_36p	-1	provisional	missense	c.2869	p.V957M	1.000	HMMPfam_GRIP,HMMSmart_Grip	superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_Grip	-	no_errors
ZNF804B	219578	genome.wustl.edu	36	7	88801838	88801838	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	88801838	88801838	C	T	SNP	ZNF804B	NM_181646	human	genbank	54_36p	+1	provisional	missense	c.1606	p.P536S	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC100128771	0	genome.wustl.edu	36	9	97948665	97948665	+	RNA	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	9	97948665	97948665	C	T	SNP	LOC100128771	XR_037860	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.009	-	-	-	pseudogene
TMEM130	222865	genome.wustl.edu	36	7	98298722	98298722	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	98298722	98298722	C	T	SNP	TMEM130	NM_152913	human	genbank	54_36p	-1	validated	nonsense	c.323	p.W108*	1.000	NULL	superfamily_PKD domain	-	no_errors
MITD1	129531	genome.wustl.edu	36	2	99163864	99163864	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	99163864	99163864	C	T	SNP	MITD1	NM_138798	human	genbank	54_36p	-1	provisional	missense	c.13	p.G5R	0.000	NULL	HMMSmart_MIT,HMMPfam_MIT	-	no_errors
GNPTAB	79158	genome.wustl.edu	36	12	100714653	100714653	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	100714653	100714653	G	A	SNP	GNPTAB	NM_024312	human	genbank	54_36p	-1	validated	nonsense	c.136	p.R46*	1.000	NULL	HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1	-	no_errors
TMEM182	130827	genome.wustl.edu	36	2	102747314	102747314	+	Silent	SNP	A	A	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	102747314	102747314	A	C	SNP	TMEM182	NM_144632	human	genbank	54_36p	+1	validated	silent	c.327	p.A109	0.783	NULL	NULL	-	no_errors
PDZD7	79955	genome.wustl.edu	36	10	102767941	102767941	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	10	102767941	102767941	C	A	SNP	PDZD7	NM_024895	human	genbank	54_36p	-1	provisional	missense	c.1427	p.R476L	0.963	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
SH3PXD2A	9644	genome.wustl.edu	36	10	105352417	105352417	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	10	105352417	105352417	C	T	SNP	SH3PXD2A	NM_014631	human	genbank	54_36p	-1	validated	missense	c.2464	p.A822T	0.155	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
COL17A1	1308	genome.wustl.edu	36	10	105801951	105801951	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	10	105801951	105801951	G	T	SNP	COL17A1	NM_000494	human	genbank	54_36p	-1	reviewed	missense	c.1954	p.P652T	0.820	NULL	HMMPfam_Collagen	-	no_errors
COL4A5	1287	genome.wustl.edu	36	X	107810567	107810567	+	Silent	SNP	T	T	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	X	107810567	107810567	T	G	SNP	COL4A5	NM_033380	human	genbank	54_36p	+1	reviewed	silent	c.3945	p.G1315	0.968	HMMPfam_Collagen	HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_C4,HMMSmart_C4	-	no_errors
FAM70B	348013	genome.wustl.edu	36	13	113606057	113606057	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	13	113606057	113606057	G	A	SNP	FAM70B	NM_182614	human	genbank	54_36p	-1	provisional	missense	c.698	p.P233L	0.868	NULL	NULL	-	no_errors
MED13L	23389	genome.wustl.edu	36	12	115159725	115159725	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	115159725	115159725	T	C	SNP	MED13L	NM_015335	human	genbank	54_36p	-1	validated	missense	c.241	p.K81E	1.000	NULL	HMMPfam_TRAP_240kDa	-	no_errors
KSR2	283455	genome.wustl.edu	36	12	116480712	116480712	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	116480712	116480712	G	C	SNP	KSR2	NM_173598	human	genbank	54_36p	-1	validated	missense	c.1012	p.L338V	1.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,HMMPfam_C1_1,PatternScan_ZF_DAG_PE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
KSR2	283455	genome.wustl.edu	36	12	116683321	116683321	+	Silent	SNP	C	T	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	116683321	116683321	C	T	SNP	KSR2	NM_173598	human	genbank	54_36p	-1	validated	silent	c.501	p.P167	0.488	NULL	HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,superfamily_Cysteine-rich domain	-	no_errors
TMEM177	80775	genome.wustl.edu	36	2	120155410	120155410	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	120155410	120155410	C	T	SNP	TMEM177	NM_001105198	human	genbank	54_36p	+1	validated	silent	c.511	p.L171	0.184	NULL	NULL	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120898535	120898535	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	11	120898535	120898535	C	A	SNP	SORL1	NM_003105	human	genbank	54_36p	+1	reviewed	missense	c.1435	p.Q479K	1.000	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_2,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,PatternScan_COPPER_BLUE,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-	no_errors
BRWD2	55717	genome.wustl.edu	36	10	122653561	122653561	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	10	122653561	122653561	G	C	SNP	BRWD2	NM_018117	human	genbank	54_36p	+1	reviewed	missense	c.2944	p.E982Q	1.000	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
OR1L4	254973	genome.wustl.edu	36	9	124526435	124526435	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	9	124526435	124526435	C	A	SNP	OR1L4	NM_001005235	human	genbank	54_36p	+1	provisional	missense	c.346	p.L116M	0.171	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
MYLK	4638	genome.wustl.edu	36	3	124940438	124940438	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	124940438	124940438	A	C	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	missense	c.584	p.L195R	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GAPVD1	26130	genome.wustl.edu	36	9	127123533	127123533	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	9	127123533	127123533	G	A	SNP	GAPVD1	NM_015635	human	genbank	54_36p	+1	validated	missense	c.1603	p.V535I	1.000	NULL	superfamily_Rho_GAP,HMMPfam_RasGAP,superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9	-	no_errors
ALDH1L1	10840	genome.wustl.edu	36	3	127355066	127355066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	127355066	127355066	C	T	SNP	ALDH1L1	NM_012190	human	genbank	54_36p	-1	reviewed	missense	c.769	p.E257K	0.003	superfamily_FMT_C_like,HMMPfam_Formyl_trans_C	PatternScan_PHOSPHOPANTETHEINE,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,PatternScan_GART,superfamily_FMT_C_like,HMMPfam_Formyl_trans_C,superfamily_ACP_like,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
ADAMTS19	171019	genome.wustl.edu	36	5	129067859	129067859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	129067859	129067859	G	A	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	+1	reviewed	missense	c.3170	p.R1057H	0.305	superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
POTEE	0	genome.wustl.edu	36	2	131737846	131737846	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	131737846	131737846	A	G	SNP	POTEE	NM_001083538	human	genbank	54_36p	+1	validated	missense	c.2348	p.E783G	1.000	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
HNRNPA0	10949	genome.wustl.edu	36	5	137116947	137116947	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	137116947	137116947	G	A	SNP	HNRNPA0	NM_006805	human	genbank	54_36p	-1	reviewed	silent	c.708	p.G236	0.987	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
PIK3CB	5291	genome.wustl.edu	36	3	139866616	139866616	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	139866616	139866616	G	T	SNP	PIK3CB	NM_006219	human	genbank	54_36p	-1	provisional	missense	c.2624	p.A875D	1.000	superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRKAB2	5565	genome.wustl.edu	36	1	145100736	145100736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	145100736	145100736	C	T	SNP	PRKAB2	NM_005399	human	genbank	54_36p	-1	reviewed	missense	c.579	p.M193I	1.000	HMMPfam_AMPKBI	HMMPfam_AMPKBI	-	no_errors
GIMAP1	170575	genome.wustl.edu	36	7	150048367	150048367	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	150048367	150048367	G	A	SNP	GIMAP1	NM_130759	human	genbank	54_36p	+1	reviewed	silent	c.342	p.A114	0.012	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	-	no_errors
CPA3	1359	genome.wustl.edu	36	3	150084160	150084160	+	Silent	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	150084160	150084160	G	C	SNP	CPA3	NM_001870	human	genbank	54_36p	+1	reviewed	silent	c.849	p.T283	0.992	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14	superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
RPTN	126638	genome.wustl.edu	36	1	150394808	150394808	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	150394808	150394808	C	A	SNP	RPTN	ENST00000316073	human	ensembl	54_36p	-1	known	missense	c.1391	p.G464V	0.075	NULL	superfamily_EF-hand,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
AGAP3	116988	genome.wustl.edu	36	7	150471573	150471573	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	150471573	150471573	C	A	SNP	AGAP3	NM_031946	human	genbank	54_36p	+1	validated	missense	c.2486	p.S829Y	1.000	superfamily_Ankyrin repeat,HMMPfam_Ank	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors
RIF1	55183	genome.wustl.edu	36	2	151997864	151997864	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	151997864	151997864	A	G	SNP	RIF1	NM_018151	human	genbank	54_36p	+1	validated	missense	c.953	p.K318R	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors
TRIM2	23321	genome.wustl.edu	36	4	154411080	154411080	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	4	154411080	154411080	G	C	SNP	TRIM2	NM_015271	human	genbank	54_36p	+1	validated	missense	c.93	p.K31N	1.000	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_BBC,HMMPfam_Filamin,HMMSmart_IG_FLMN,superfamily_Ig_E-set,superfamily_SSF101898,HMMPfam_NHL	-	no_errors
FAM78B	149297	genome.wustl.edu	36	1	164306482	164306482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	164306482	164306482	C	T	SNP	FAM78B	NM_001017961	human	genbank	54_36p	-1	predicted	missense	c.406	p.V136I	1.000	NULL	NULL	-	no_errors
SLC38A11	151258	genome.wustl.edu	36	2	165502120	165502120	+	Silent	SNP	T	T	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	165502120	165502120	T	A	SNP	SLC38A11	NM_173512	human	genbank	54_36p	-1	provisional	silent	c.369	p.S123	0.041	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
C1orf114	57821	genome.wustl.edu	36	1	167654879	167654879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	167654879	167654879	C	T	SNP	C1orf114	NM_021179	human	genbank	54_36p	-1	predicted	missense	c.1211	p.S404N	1.000	NULL	NULL	-	no_errors
LOC401218	401218	genome.wustl.edu	36	5	172122688	172122688	+	RNA	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	172122688	172122688	C	G	SNP	LOC401218	XR_042344	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.646	-	-	-	pseudogene
FAM5B	57795	genome.wustl.edu	36	1	175516505	175516505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	175516505	175516505	C	T	SNP	FAM5B	NM_021165	human	genbank	54_36p	+1	provisional	missense	c.1570	p.R524C	1.000	NULL	HMMSmart_SM00457	-	no_errors
SEC16B	89866	genome.wustl.edu	36	1	176168485	176168485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	176168485	176168485	G	A	SNP	SEC16B	NM_033127	human	genbank	54_36p	-1	validated	missense	c.2903	p.P968L	0.005	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
NPHS2	7827	genome.wustl.edu	36	1	177792793	177792793	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	177792793	177792793	C	G	SNP	NPHS2	NM_014625	human	genbank	54_36p	-1	reviewed	missense	c.730	p.D244H	0.997	HMMSmart_SM00244,HMMPfam_Band_7,PatternScan_BAND_7	HMMSmart_SM00244,HMMPfam_Band_7,PatternScan_BAND_7	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179148382	179148382	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	179148382	179148382	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.58666	p.G19556S	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179194488	179194488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	179194488	179194488	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.33254	p.R11085Q	1.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181346337	181346337	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	181346337	181346337	T	A	SNP	LAMC1	NM_002293	human	genbank	54_36p	+1	reviewed	missense	c.946	p.C316S	1.000	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,HMMSmart_LamB,HMMPfam_Laminin_B,PatternScan_EGF_2	-	no_errors
ZNF804A	91752	genome.wustl.edu	36	2	185509557	185509557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	185509557	185509557	G	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	+1	provisional	missense	c.1189	p.E397K	0.283	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
F11	2160	genome.wustl.edu	36	4	187438530	187438530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	4	187438530	187438530	G	A	SNP	F11	NM_000128	human	genbank	54_36p	+1	reviewed	missense	c.1025	p.G342E	0.759	HMMSmart_SM00223,PatternScan_APPLE,HMMPfam_PAN_1	HMMSmart_SM00223,PatternScan_APPLE,HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LPP	4026	genome.wustl.edu	36	3	190073210	190073210	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	3	190073210	190073210	G	C	SNP	LPP	NM_005578	human	genbank	54_36p	+1	validated	missense	c.1675	p.D559H	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,HMMPfam_LIM	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
IPO9	55705	genome.wustl.edu	36	1	200084201	200084201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	200084201	200084201	G	A	SNP	IPO9	NM_018085	human	genbank	54_36p	+1	validated	missense	c.370	p.V124M	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors
CR1	1378	genome.wustl.edu	36	1	205851754	205851754	+	Silent	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	205851754	205851754	C	A	SNP	CR1	NM_000651	human	genbank	54_36p	+1	reviewed	silent	c.6405	p.L2135	0.001	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
WDR69	164781	genome.wustl.edu	36	2	228477942	228477942	+	Silent	SNP	C	C	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	228477942	228477942	C	A	SNP	WDR69	NM_178821	human	genbank	54_36p	+1	provisional	silent	c.702	p.I234	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
KIAA1383	54627	genome.wustl.edu	36	1	231009398	231009398	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	231009398	231009398	G	C	SNP	KIAA1383	NM_019090	human	genbank	54_36p	+1	validated	missense	c.2006	p.R669T	0.167	NULL	NULL	-	no_errors
DGKD	8527	genome.wustl.edu	36	2	234033146	234033146	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	234033146	234033146	G	T	SNP	DGKD	NM_152879	human	genbank	54_36p	+1	reviewed	missense	c.2699	p.R900L	1.000	HMMPfam_DAGK_acc,HMMSmart_SM00045	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors
UGT1A4	54657	genome.wustl.edu	36	2	234345819	234345819	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	234345819	234345819	G	T	SNP	UGT1A4	NM_007120	human	genbank	54_36p	+1	reviewed	missense	c.1480	p.G494C	0.986	HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
FMN2	56776	genome.wustl.edu	36	1	238353262	238353262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	238353262	238353262	G	A	SNP	FMN2	NM_020066	human	genbank	54_36p	+1	validated	silent	c.2205	p.S735	0.478	NULL	PatternScan_LECTIN_LEGUME_BETA,HMMSmart_SM00498,HMMPfam_Drf_FH1,superfamily_Formin homology 2 domain (FH2 domain),HMMPfam_FH2	-	no_errors
PPPDE1	51029	genome.wustl.edu	36	1	242919230	242919230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	242919230	242919230	G	A	SNP	PPPDE1	NM_016076	human	genbank	54_36p	+1	validated	missense	c.172	p.G58R	1.000	HMMPfam_DUF862	HMMPfam_DUF862	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519012	7519013	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	17	7519012	7519013	-	T	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.562_561	p.L187fs	0.381:0.265	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
MRTO4	51154	genome.wustl.edu	36	1	19456591	19456592	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	GG	GG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	1	19456591	19456592	GG	-	DEL	MRTO4	NM_016183	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.330_331	p.E111fs	0.990:1.000	HMMPfam_Ribosomal_L10	HMMPfam_Ribosomal_L10	(deletion:cds_exon[19456535,19456602])	no_errors
NCOA1	8648	genome.wustl.edu	36	2	24839131	24839132	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	AG	AG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	24839131	24839132	AG	-	DEL	NCOA1	NM_003743	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.4137_4138	p.E1380fs	1.000:1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	(deletion:cds_exon[24839060,24839149])	no_errors
RB1	5925	genome.wustl.edu	36	13	47849158	47849158	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	13	47849158	47849158	A	-	DEL	RB1	NM_000321	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1319	p.I441fs	0.984	HMMPfam_RB_A,superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	(deletion:cds_exon[47849055,47849171])	no_errors
CCDC104	112942	genome.wustl.edu	36	2	55624647	55624647	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	2	55624647	55624647	C	-	DEL	CCDC104	NM_080667	human	genbank	54_36p	+1	validated	frame_shift_del	c.710	p.S238fs	0.948	NULL	NULL	(deletion:cds_exon[55624578,55624714])	no_errors
TNRC18	27320	genome.wustl.edu	36	7	62670733	62670734	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	7	62670733	62670734	-	GCT	INS	TNRC18	XM_376618	human	genbank	54_36p	-1	model	in_frame_ins	c.1486_1485	p.495in_frame_insS	1.000:1.000	NULL	NULL	-	pseudogene
HNF1A	6927	genome.wustl.edu	36	12	119919013	119919014	+	Frame_Shift_Ins	INS	-	-	TCATTCAT	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	12	119919013	119919014	-	TCATTCAT	INS	HNF1A	ENST00000344370	human	ensembl	54_36p	+1	known	frame_shift_ins	c.1394_1395	p.F469fs	0.219:0.228	HMMPfam_HNF-1B_C	superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C,HMMPfam_HNF-1A_C	-	no_errors
FGFR4	2264	genome.wustl.edu	36	5	176449742	176449743	+	Frame_Shift_Ins	INS	-	-	GTGT	novel	unknown	TCGA-09-1674-01A-01W-0633-09	TCGA-09-1674-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d45bb919-f2fd-4ac0-ae04-fac8e2105a31	05712782-d79d-460a-9809-dded595d46fe	5	176449742	176449743	-	GTGT	INS	FGFR4	ENST00000377207	human	ensembl	54_36p	+1	known	frame_shift_ins	c.67_68	p.V27fs	0.378:0.377	NULL	PatternScan_EGF_2,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_start_codon
