Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
PROKR2	128674	genome.wustl.edu	36	20	5230804	5230804	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	20	5230804	5230804	T	A	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	missense	c.1037	p.K346M	1.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PPP2R2C	5522	genome.wustl.edu	36	4	6428462	6428462	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	4	6428462	6428462	C	T	SNP	PPP2R2C	NM_020416	human	genbank	54_36p	-1	reviewed	silent	c.432	p.T144	0.919	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	7073956	7073956	+	Silent	SNP	T	C	C	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	7073956	7073956	T	C	SNP	CAMTA1	NM_015215	human	genbank	54_36p	+1	validated	silent	c.240	p.I80	1.000	HMMPfam_CG-1	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors
VCX3B	425054	genome.wustl.edu	36	X	8394367	8394367	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	X	8394367	8394367	C	T	SNP	VCX3B	NM_001001888	human	genbank	54_36p	+1	reviewed	silent	c.594	p.S198	0.000	NULL	NULL	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11776085	11776085	+	Silent	SNP	G	A	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	17	11776085	11776085	G	A	SNP	DNAH9	NM_001372	human	genbank	54_36p	+1	reviewed	silent	c.12135	p.T4045	0.780	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
REPS2	9185	genome.wustl.edu	36	X	16998008	16998008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	X	16998008	16998008	C	A	SNP	REPS2	NM_004726	human	genbank	54_36p	+1	reviewed	missense	c.1304	p.A435D	0.998	NULL	superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors
LOC729524	729524	genome.wustl.edu	36	13	18138500	18138500	+	RNA	SNP	G	A	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	13	18138500	18138500	G	A	SNP	LOC729524	XR_015575	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SATB1	6304	genome.wustl.edu	36	3	18366173	18366173	+	Silent	SNP	C	C	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	3	18366173	18366173	C	T	SNP	SATB1	NM_002971	human	genbank	54_36p	-1	validated	silent	c.1785	p.Q595	0.918	NULL	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
PIK3C2G	5288	genome.wustl.edu	36	12	18391023	18391023	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	12	18391023	18391023	A	C	SNP	PIK3C2G	ENST00000266497	human	ensembl	54_36p	+1	known	missense	c.1611	p.E537D	0.687	HMMPfam_PI3K_C2	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMPfam_PI3K_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00239,HMMPfam_C2	-	no_errors
RIMBP3	85376	genome.wustl.edu	36	22	18838524	18838524	+	Silent	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	22	18838524	18838524	C	A	SNP	RIMBP3	NM_015672	human	genbank	54_36p	-1	validated	silent	c.2778	p.L926	0.000	NULL	PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III	-	no_errors
TAS1R2	80834	genome.wustl.edu	36	1	19054056	19054056	+	Silent	SNP	G	A	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	19054056	19054056	G	A	SNP	TAS1R2	NM_152232	human	genbank	54_36p	-1	validated	silent	c.495	p.S165	0.958	superfamily_SSF53822,HMMPfam_ANF_receptor	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,superfamily_SSF57586,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_errors
KRT18P40	390904	genome.wustl.edu	36	19	20936013	20936013	+	RNA	SNP	A	A	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	19	20936013	20936013	A	T	SNP	KRT18P40	XR_017288	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC391019	391019	genome.wustl.edu	36	1	23444000	23444000	+	RNA	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	23444000	23444000	G	T	SNP	LOC391019	XR_017506	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.985	-	-	-	pseudogene
ADAM7	8756	genome.wustl.edu	36	8	24402622	24402622	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	8	24402622	24402622	T	G	SNP	ADAM7	NM_003817	human	genbank	54_36p	+1	validated	missense	c.1152	p.D384E	0.006	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors
CAD	790	genome.wustl.edu	36	2	27302210	27302210	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	27302210	27302210	C	G	SNP	CAD	NM_004341	human	genbank	54_36p	+1	reviewed	missense	c.1754	p.T585S	1.000	HMMPfam_CPSase_L_D2,superfamily_SSF56059	superfamily_CP_synthsmall,HMMPfam_CPSase_sm_chain,superfamily_SSF52317,HMMPfam_GATase,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_chain,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_CarbamoylP_synth_lsu_oligo,HMMPfam_CPSase_L_D3,superfamily_SSF52335,HMMPfam_MGS,HMMPfam_Amidohydro_1,superfamily_SSF51556,PatternScan_DIHYDROOROTASE_1,PatternScan_DIHYDROOROTASE_2,superfamily_Metalo_hydrolase,superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_OTCace	-	no_errors
OR2B3	442184	genome.wustl.edu	36	6	29162883	29162883	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	6	29162883	29162883	C	A	SNP	OR2B3	NM_001005226	human	genbank	54_36p	-1	validated	missense	c.122	p.G41V	0.440	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SETD1A	9739	genome.wustl.edu	36	16	30890382	30890382	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	16	30890382	30890382	G	T	SNP	SETD1A	NM_014712	human	genbank	54_36p	+1	provisional	nonsense	c.3199	p.E1067*	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET	-	no_errors
NRG1	3084	genome.wustl.edu	36	8	32741343	32741343	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	8	32741343	32741343	A	T	SNP	NRG1	NM_013956	human	genbank	54_36p	+1	reviewed	missense	c.1819	p.T607S	0.116	HMMPfam_Neuregulin	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,HMMPfam_Neuregulin	-	no_errors
DEPDC7	91614	genome.wustl.edu	36	11	33006769	33006769	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	11	33006769	33006769	C	G	SNP	DEPDC7	NM_001077242	human	genbank	54_36p	+1	validated	missense	c.637	p.Q213E	1.000	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	-	no_errors
TCP11L1	55346	genome.wustl.edu	36	11	33050772	33050772	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	11	33050772	33050772	C	A	SNP	TCP11L1	NM_018393	human	genbank	54_36p	+1	validated	missense	c.1504	p.L502M	1.000	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
EPHA10	284656	genome.wustl.edu	36	1	38000053	38000053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	38000053	38000053	G	T	SNP	EPHA10	NM_001099439	human	genbank	54_36p	-1	validated	missense	c.461	p.T154K	1.000	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
ZFP106	64397	genome.wustl.edu	36	15	40524354	40524354	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	15	40524354	40524354	T	G	SNP	ZFP106	NM_022473	human	genbank	54_36p	-1	provisional	missense	c.3254	p.Y1085S	1.000	NULL	PatternScan_WD_REPEATS_1,HMMSmart_ZnF_C2H2,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMSmart_PQQ,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ENOX1	55068	genome.wustl.edu	36	13	42686228	42686228	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	13	42686228	42686228	C	A	SNP	ENOX1	NM_017993	human	genbank	54_36p	-1	validated	missense	c.1830	p.L610F	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
CDCP1	64866	genome.wustl.edu	36	3	45102354	45102354	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	3	45102354	45102354	G	T	SNP	CDCP1	NM_022842	human	genbank	54_36p	-1	reviewed	missense	c.2291	p.P764Q	1.000	NULL	superfamily_Spermadhesin CUB domain	-	no_errors
FBXO11	80204	genome.wustl.edu	36	2	47915477	47915477	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	47915477	47915477	T	C	SNP	FBXO11	NM_025133	human	genbank	54_36p	-1	reviewed	missense	c.503	p.H168R	1.000	superfamily_SSF81383	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383,superfamily_Pectin_lyas_like,HMMSmart_PbH1,HMMSmart_CASH,HMMPfam_zf-UBR	-	no_errors
ADNP	23394	genome.wustl.edu	36	20	48943345	48943345	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	20	48943345	48943345	C	A	SNP	ADNP	NM_015339	human	genbank	54_36p	-1	reviewed	missense	c.1313	p.G438V	0.047	NULL	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
C10orf71	118461	genome.wustl.edu	36	10	50201963	50201963	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	10	50201963	50201963	C	G	SNP	C10orf71	NM_199459	human	genbank	54_36p	+1	validated	missense	c.1367	p.A456G	0.001	NULL	NULL	-	no_errors
LOC653895	653895	genome.wustl.edu	36	10	52156920	52156920	+	RNA	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	10	52156920	52156920	C	A	SNP	LOC653895	XR_037143	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
PXDNL	137902	genome.wustl.edu	36	8	52447074	52447074	+	Silent	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	8	52447074	52447074	G	T	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	silent	c.3813	p.V1271	0.374	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors
CCDC85A	114800	genome.wustl.edu	36	2	56453037	56453037	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	56453037	56453037	G	T	SNP	CCDC85A	NM_001080433	human	genbank	54_36p	+1	provisional	missense	c.1372	p.G458C	1.000	NULL	HMMPfam_DUF2216	-	no_errors
PPIB	5479	genome.wustl.edu	36	15	62236105	62236105	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	15	62236105	62236105	C	A	SNP	PPIB	NM_000942	human	genbank	54_36p	-1	reviewed	missense	c.400	p.G134W	0.998	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
UGT2B11	10720	genome.wustl.edu	36	4	70114966	70114966	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	4	70114966	70114966	T	A	SNP	UGT2B11	NM_001073	human	genbank	54_36p	-1	provisional	missense	c.64	p.S22C	0.002	NULL	superfamily_SSF53756,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
C6orf57	135154	genome.wustl.edu	36	6	71345991	71345991	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	6	71345991	71345991	G	T	SNP	C6orf57	NM_145267	human	genbank	54_36p	+1	validated	splice_site	c.217+1	e2+1	1.000	-	-	-	no_errors
FOXK2	3607	genome.wustl.edu	36	17	78114699	78114699	+	Silent	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	17	78114699	78114699	C	A	SNP	FOXK2	NM_004514	human	genbank	54_36p	+1	reviewed	silent	c.600	p.P200	0.998	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
VCAN	1462	genome.wustl.edu	36	5	82821746	82821746	+	Silent	SNP	G	A	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	5	82821746	82821746	G	A	SNP	VCAN	NM_004385	human	genbank	54_36p	+1	validated	silent	c.144	p.T48	0.930	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
LOC730268	730268	genome.wustl.edu	36	2	87806810	87806810	+	RNA	SNP	G	G	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	87806810	87806810	G	A	SNP	LOC730268	XR_015914	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
PDE6C	5146	genome.wustl.edu	36	10	95362902	95362902	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	10	95362902	95362902	G	T	SNP	PDE6C	NM_006204	human	genbank	54_36p	+1	validated	missense	c.430	p.G144C	0.998	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
WARS	7453	genome.wustl.edu	36	14	99871024	99871024	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	14	99871024	99871024	T	C	SNP	WARS	NM_004184	human	genbank	54_36p	-1	reviewed	missense	c.1357	p.T453A	1.000	superfamily_Nucleotidylyl transferase	superfamily_S15/NS1 RNA-binding domain,HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1b	-	no_errors
GRIK2	2898	genome.wustl.edu	36	6	102180994	102180994	+	Silent	SNP	A	A	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	6	102180994	102180994	A	T	SNP	GRIK2	NM_021956	human	genbank	54_36p	+1	reviewed	silent	c.330	p.S110	0.677	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
TBCKL	0	genome.wustl.edu	36	4	107389532	107389532	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	4	107389532	107389532	T	C	SNP	TBCKL	NM_033115	human	genbank	54_36p	-1	provisional	missense	c.526	p.I176V	1.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase,superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC,superfamily_Rhodanese-like,HMMSmart_RHOD,HMMPfam_Rhodanese	-	no_errors
MYH15	22989	genome.wustl.edu	36	3	109590514	109590514	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	3	109590514	109590514	G	T	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	missense	c.5588	p.T1863N	1.000	HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat	-	no_errors
LOC644950	0	genome.wustl.edu	36	3	110611479	110611479	+	Silent	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	3	110611479	110611479	G	T	SNP	LOC644950	XM_001717224	human	genbank	54_36p	-1	model	silent	c.108	p.L36	1.000	superfamily_Histone-fold,HMMSmart_SM00428	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	-	no_errors
PPP2R1B	5519	genome.wustl.edu	36	11	111123933	111123933	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	11	111123933	111123933	C	G	SNP	PPP2R1B	NM_181699	human	genbank	54_36p	-1	reviewed	missense	c.1354	p.D452H	1.000	superfamily_ARM-type_fold,HMMPfam_HEAT	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors
GPR85	54329	genome.wustl.edu	36	7	112511509	112511509	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	7	112511509	112511509	C	A	SNP	GPR85	NM_018970	human	genbank	54_36p	-1	validated	missense	c.504	p.E168D	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
DCLRE1B	64858	genome.wustl.edu	36	1	114256181	114256181	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	114256181	114256181	C	A	SNP	DCLRE1B	NM_022836	human	genbank	54_36p	+1	provisional	missense	c.1444	p.P482T	0.004	NULL	HMMPfam_Lactamase_B,superfamily_SSF56281,HMMPfam_DRMBL	-	no_errors
OR10S1	219873	genome.wustl.edu	36	11	123353559	123353559	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	11	123353559	123353559	G	C	SNP	OR10S1	NM_001004474	human	genbank	54_36p	-1	provisional	missense	c.50	p.P17R	0.418	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124400764	124400764	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	12	124400764	124400764	A	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	+1	provisional	missense	c.866	p.N289I	0.975	NULL	NULL	-	no_errors
FAT4	79633	genome.wustl.edu	36	4	126591757	126591757	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	4	126591757	126591757	G	T	SNP	FAT4	NM_024582	human	genbank	54_36p	+1	validated	missense	c.10136	p.G3379V	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_EGF	-	no_errors
RIMBP2	23504	genome.wustl.edu	36	12	129492670	129492670	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	12	129492670	129492670	A	T	SNP	RIMBP2	NM_015347	human	genbank	54_36p	-1	validated	missense	c.1129	p.S377T	1.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-	no_errors
ADAMTS8	11095	genome.wustl.edu	36	11	129780743	129780743	+	Missense_Mutation	SNP	C	C	T	rs61753089	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	11	129780743	129780743	C	T	SNP	ADAMTS8	NM_007037	human	genbank	54_36p	-1	reviewed	missense	c.2590	p.G864S	0.974	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
GOLGA3	2802	genome.wustl.edu	36	12	131908685	131908685	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	12	131908685	131908685	C	A	SNP	GOLGA3	NM_005895	human	genbank	54_36p	-1	reviewed	missense	c.103	p.V35L	0.000	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin	-	no_errors
SPOCK1	6695	genome.wustl.edu	36	5	136348749	136348749	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	5	136348749	136348749	T	A	SNP	SPOCK1	NM_004598	human	genbank	54_36p	-1	reviewed	missense	c.970	p.S324C	0.970	superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1	superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2,HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473,superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY	-	no_errors
KIAA1549	57670	genome.wustl.edu	36	7	138246564	138246564	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	7	138246564	138246564	G	T	SNP	KIAA1549	NM_020910	human	genbank	54_36p	-1	validated	missense	c.2863	p.P955T	0.987	NULL	PatternScan_HTH_LUXR_1	-	no_errors
CACNA1B	774	genome.wustl.edu	36	9	140126747	140126747	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	9	140126747	140126747	G	T	SNP	CACNA1B	NM_000718	human	genbank	54_36p	+1	validated	missense	c.5505	p.K1835N	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
PCDHA1	56147	genome.wustl.edu	36	5	140148379	140148379	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	5	140148379	140148379	C	A	SNP	PCDHA1	NM_018900	human	genbank	54_36p	+1	reviewed	missense	c.2320	p.P774T	0.990	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
TRAPPC9	83696	genome.wustl.edu	36	8	141379838	141379838	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	8	141379838	141379838	C	G	SNP	TRAPPC9	NM_031466	human	genbank	54_36p	-1	provisional	missense	c.1974	p.L658F	1.000	NULL	HMMPfam_Trs120	-	no_errors
uc010lpb.1	0	genome.wustl.edu	36	7	143138966	143138966	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	7	143138966	143138966	C	A	SNP	uc010lpb.1	ENST00000291129	human	ensembl	54_36p	+1	known	nonsense	c.710	p.S237*	0.220	NULL	NULL	-	no_start_codon
OR10J3	441911	genome.wustl.edu	36	1	157550327	157550327	+	Silent	SNP	G	G	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	157550327	157550327	G	A	SNP	OR10J3	NM_001004467	human	genbank	54_36p	-1	provisional	silent	c.747	p.V249	0.859	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LY75	4065	genome.wustl.edu	36	2	160463715	160463715	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	160463715	160463715	A	T	SNP	LY75	NM_002349	human	genbank	54_36p	-1	validated	missense	c.196	p.L66I	0.926	superfamily_Ricin B-like lectins,HMMSmart_SM00458	superfamily_Ricin B-like lectins,HMMSmart_SM00458,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169702211	169702211	+	Silent	SNP	T	T	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	169702211	169702211	T	A	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	silent	c.13557	p.I4519	0.993	NULL	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors
UBTD2	92181	genome.wustl.edu	36	5	171571676	171571676	+	Silent	SNP	C	T	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	5	171571676	171571676	C	T	SNP	UBTD2	NM_152277	human	genbank	54_36p	-1	validated	silent	c.468	p.L156	0.998	superfamily_SSF54236,HMMSmart_UBQ	PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184230683	184230683	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	184230683	184230683	G	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	missense	c.3619	p.G1207C	0.899	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors
GPR1	2825	genome.wustl.edu	36	2	206749812	206749812	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	206749812	206749812	G	T	SNP	GPR1	NM_001098199	human	genbank	54_36p	-1	validated	missense	c.405	p.H135Q	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219577207	219577207	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	219577207	219577207	C	A	SNP	CCDC108	NM_194302	human	genbank	54_36p	-1	provisional	missense	c.5266	p.G1756W	0.000	NULL	PatternScan_MGMT,superfamily_PapD-like	-	no_errors
OR14A16	284532	genome.wustl.edu	36	1	246045507	246045507	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	246045507	246045507	C	A	SNP	OR14A16	NM_001001966	human	genbank	54_36p	-1	provisional	missense	c.148	p.D50Y	0.024	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519120	7519125	+	In_Frame_Del	DEL	GGTGGG	GGTGGG	-	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	GGTGGG	GGTGGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	17	7519120	7519125	GGTGGG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.535_530	p.PH177in_frame_del	1.000:1.000:1.000:0.997:0.998:1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7519096,7519279])	no_errors
EPOR	2057	genome.wustl.edu	36	19	11350031	11350060	+	In_Frame_Del	DEL	GGAGGTCCTCACTGGGCGGGTTCCGGGGCA	GGAGGTCCTCACTGGGCGGGTTCCGGGGCA	-	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	GGAGGTCCTCACTGGGCGGGTTCCGGGGCA	GGAGGTCCTCACTGGGCGGGTTCCGGGGCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	19	11350031	11350060	GGAGGTCCTCACTGGGCGGGTTCCGGGGCA	-	DEL	EPOR	NM_000121	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1156_1127	p.LPRNPPSEDL376in_frame_del	0.000:0.001:0.007:0.007:0.006:0.005:0.017:0.177:0.104:0.096:0.004:0.003:0.001:0.001:0.001:0.000:0.002:0.133:0.167:0.135:0.131:0.176:0.198:0.240:0.732:0.970:0.995:0.995:0.995:0.995	NULL	superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F1	(deletion:cds_exon[11349660,11350271])	no_errors
GCKR	2646	genome.wustl.edu	36	2	27584097	27584105	+	In_Frame_Del	DEL	CTTCCCTCT	CTTCCCTCT	-	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	CTTCCCTCT	CTTCCCTCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	2	27584097	27584105	CTTCCCTCT	-	DEL	GCKR	NM_001486	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1189_1197	p.PSL398in_frame_del	0.995:0.997:0.997:0.996:0.989:0.948:0.953:0.956:0.948	superfamily_SIS domain	superfamily_SIS domain,PatternScan_GCKR	(deletion:cds_exon[27584052,27584148])	no_errors
PODN	127435	genome.wustl.edu	36	1	53319117	53319131	+	In_Frame_Del	DEL	CTCAAGGGGATCTTT	CTCAAGGGGATCTTT	-	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	CTCAAGGGGATCTTT	CTCAAGGGGATCTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	53319117	53319131	CTCAAGGGGATCTTT	-	DEL	PODN	NM_153703	human	genbank	54_36p	+1	validated	in_frame_del	c.1786_1800	p.KGIFL597in_frame_del	1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.991:0.998:1.000:1.000:1.000:1.000:1.000	superfamily_SSF52047	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,superfamily_SSF52047	(deletion:cds_exon[53318988,53319136])	no_errors
OR10J3	441911	genome.wustl.edu	36	1	157550497	157550534	+	Frame_Shift_Del	DEL	TGTCTGTGCAGGCCAGCTTCAGCAGGTGTCTCACATCA	TGTCTGTGCAGGCCAGCTTCAGCAGGTGTCTCACATCA	-	novel	unknown	TCGA-09-1675-01B-01W-0633-09	TCGA-09-1675-10A-01W-0633-09	TGTCTGTGCAGGCCAGCTTCAGCAGGTGTCTCACATCA	TGTCTGTGCAGGCCAGCTTCAGCAGGTGTCTCACATCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	736114fa-92b0-47cf-8ada-45c45b07c3f5	ff6b0463-d32c-492e-b911-ca0cb1274916	1	157550497	157550534	TGTCTGTGCAGGCCAGCTTCAGCAGGTGTCTCACATCA	-	DEL	OR10J3	NM_001004467	human	genbank	54_36p	-1	provisional	frame_shift_del	c.577_540	p.D181fs	0.091:0.060:0.061:0.023:0.000:0.000:0.000:0.039:0.988:1.000:0.994:0.993:0.977:0.981:0.999:0.999:0.925:0.919:0.917:0.856:0.870:0.789:0.622:0.632:0.002:0.001:0.027:0.026:0.003:0.003:0.000:0.001:0.133:0.144:0.179:0.977:0.997:0.998	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	(deletion:cds_exon[157550084,157551073])	no_errors
