Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
NPPA	4878	broad.mit.edu	36	1	11828658	11828658	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
PADI3	51702	broad.mit.edu	36	1	17466930	17466930	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
HIST2H2AC	8338	broad.mit.edu	36	1	148125221	148125221	+	Nonsense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
PGLYRP4	57115	broad.mit.edu	36	1	151579548	151579548	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
RASAL2	9462	broad.mit.edu	36	1	176535831	176535831	+	Nonsense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
KCNT2	343450	broad.mit.edu	36	1	194516679	194516679	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CR2	1380	broad.mit.edu	36	1	205706730	205706730	+	Nonsense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
RYR2	6262	broad.mit.edu	36	1	235726661	235726661	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
VN1R5	317705	broad.mit.edu	36	1	245486642	245486642	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
LIPK	643414	broad.mit.edu	36	10	90502302	90502302	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CYP2C19	1557	broad.mit.edu	36	10	96592719	96592719	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
RAPSN	5913	broad.mit.edu	36	11	47419742	47419742	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
OR8H1	219469	broad.mit.edu	36	11	55814446	55814446	+	Silent	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
SSRP1	6749	broad.mit.edu	36	11	56852464	56852464	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
TCN1	6947	broad.mit.edu	36	11	59386668	59386668	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
PACS1	55690	broad.mit.edu	36	11	65735253	65735253	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
C11orf82	220042	broad.mit.edu	36	11	82317532	82317532	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
FAT3	120114	broad.mit.edu	36	11	91727535	91727535	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
ACAT1	38	broad.mit.edu	36	11	107517594	107517594	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
FGF14	2259	broad.mit.edu	36	13	101177047	101177047	+	Silent	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
AKAP6	9472	broad.mit.edu	36	14	32084933	32084933	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
C14orf118	55668	broad.mit.edu	36	14	75714093	75714093	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
BDKRB1	623	broad.mit.edu	36	14	95800367	95800367	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
RYR3	6263	broad.mit.edu	36	15	31680950	31680950	+	Silent	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
C16orf75	116028	broad.mit.edu	36	16	11352077	11352077	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
ERCC4	2072	broad.mit.edu	36	16	13949294	13949294	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
EIF4A1	1973	broad.mit.edu	36	17	7421681	7421681	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
LGALS9C	654346	broad.mit.edu	36	17	18327955	18327955	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
IFI35	3430	broad.mit.edu	36	17	38419154	38419154	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
RGS9	8787	broad.mit.edu	36	17	60651880	60651880	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
BPTF	2186	broad.mit.edu	36	17	63331364	63331364	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CYP2A6	1548	broad.mit.edu	36	19	46044794	46044794	+	Silent	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
ZNF765	91661	broad.mit.edu	36	19	58604142	58604142	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
LILRA1	11024	broad.mit.edu	36	19	59798208	59798208	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
KIF3C	3797	broad.mit.edu	36	2	26056956	26056956	+	Silent	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
IL18RAP	8807	broad.mit.edu	36	2	102420236	102420236	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
BIN1	274	broad.mit.edu	36	2	127544637	127544637	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
MYO1B	4430	broad.mit.edu	36	2	191969465	191969465	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
UGT1A10	54575	broad.mit.edu	36	2	234210562	234210562	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
VPS16	64601	broad.mit.edu	36	20	2794086	2794086	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
DSN1	79980	broad.mit.edu	36	20	34832691	34832691	+	Silent	SNP	T	T	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
DNTTIP1	116092	broad.mit.edu	36	20	43863484	43863484	+	Nonsense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
SULF2	55959	broad.mit.edu	36	20	45798887	45798887	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
B4GALT5	9334	broad.mit.edu	36	20	47696935	47696935	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
POTED	317754	broad.mit.edu	36	21	13909667	13909667	+	Nonsense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
C21orf66	94104	broad.mit.edu	36	21	33039006	33039006	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
HLCS	3141	broad.mit.edu	36	21	37231147	37231147	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
SLC6A1	6529	broad.mit.edu	36	3	11034656	11034656	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CTNNB1	1499	broad.mit.edu	36	3	41253081	41253081	+	Splice_Site	SNP	A	A	G	rs71811389	unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
COL7A1	1294	broad.mit.edu	36	3	48584454	48584454	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
EEFSEC	60678	broad.mit.edu	36	3	129542882	129542882	+	Silent	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
ABCF3	55324	broad.mit.edu	36	3	185393112	185393112	+	Silent	SNP	C	C	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
THAP9	79725	broad.mit.edu	36	4	84058716	84058716	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
PTPN13	5783	broad.mit.edu	36	4	87950112	87950112	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
MEPE	56955	broad.mit.edu	36	4	88986112	88986112	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
FAT4	79633	broad.mit.edu	36	4	126461375	126461375	+	Silent	SNP	T	T	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
TKTL2	84076	broad.mit.edu	36	4	164612997	164612997	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
SAP30	8819	broad.mit.edu	36	4	174529208	174529208	+	Silent	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
GLRA3	8001	broad.mit.edu	36	4	175816848	175816848	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
KIAA0947	23379	broad.mit.edu	36	5	5513573	5513573	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
MYO10	4651	broad.mit.edu	36	5	16725879	16725879	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
IL31RA	133396	broad.mit.edu	36	5	55248398	55248398	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
FCHO2	115548	broad.mit.edu	36	5	72400306	72400306	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
SLCO6A1	133482	broad.mit.edu	36	5	101862268	101862268	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
FCHSD1	89848	broad.mit.edu	36	5	141006472	141006472	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
TEAD3	7005	broad.mit.edu	36	6	35562328	35562328	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
MOCS1	0	broad.mit.edu	36	6	39985574	39985574	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CD109	135228	broad.mit.edu	36	6	74574677	74574677	+	Silent	SNP	A	A	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CGA	1081	broad.mit.edu	36	6	87852257	87852257	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
MET	4233	broad.mit.edu	36	7	116127036	116127036	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
NPBWR1	2831	broad.mit.edu	36	8	54015988	54015988	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
ASPH	444	broad.mit.edu	36	8	62651905	62651905	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CYP7B1	9420	broad.mit.edu	36	8	65671997	65671997	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
C9orf72	203228	broad.mit.edu	36	9	27538308	27538308	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
UNC13B	10497	broad.mit.edu	36	9	35300543	35300543	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
TBC1D2	55357	broad.mit.edu	36	9	100057643	100057643	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
SURF6	6838	broad.mit.edu	36	9	135189382	135189382	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
MAGED1	9500	broad.mit.edu	36	X	51656346	51656346	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
PHF8	23133	broad.mit.edu	36	X	54037048	54037048	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
CXorf39	139231	broad.mit.edu	36	X	103321041	103321041	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
KIAA1210	57481	broad.mit.edu	36	X	118112043	118112043	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
SPANXN4	441525	broad.mit.edu	36	X	141949669	141949669	+	Nonsense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
RIMBP2	23504	broad.mit.edu	36	12	129463099	129463127	+	Splice_Site	DEL	ATAGGGGTTTGCGCTTACCTATTTTCTCC	-	ATAGGGGTTTGCGCTTACCTATTTTCTCC	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	ATAGGGGTTTGCGCTTACCTATTTTCTCC	ATAGGGGTTTGCGCTTACCTATTTTCTCC	-	-	ATAGGGGTTTGCGCTTACCTATTTTCTCC	ATAGGGGTTTGCGCTTACCTATTTTCTCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
NP	4860	broad.mit.edu	36	14	20010384	20010385	+	Frame_Shift_Del	DEL	TC	-	TC	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	TC	TC	-	-	TC	TC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
YLPM1	56252	broad.mit.edu	36	14	74334998	74335001	+	Frame_Shift_Del	DEL	GGTT	-	GGTT	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GGTT	GGTT	-	-	GGTT	GGTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
TDP1	55775	broad.mit.edu	36	14	89525057	89525063	+	Frame_Shift_Del	DEL	GTCAGTT	-	GTCAGTT	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GTCAGTT	GTCAGTT	-	-	GTCAGTT	GTCAGTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
ATG2B	55102	broad.mit.edu	36	14	95858346	95858347	+	Splice_Site	INS	-	AA	-	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	-	-	AA	AA	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
IL21R	50615	broad.mit.edu	36	16	27356479	27356504	+	Frame_Shift_Del	DEL	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	GAGTGTGGCAGCTTTCTCCTGGCTGA	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GAGTGTGGCAGCTTTCTCCTGGCTGA	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	-	GAGTGTGGCAGCTTTCTCCTGGCTGA	GAGTGTGGCAGCTTTCTCCTGGCTGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
TP53	7157	broad.mit.edu	36	17	7518991	7519015	+	Splice_Site	DEL	TAAGATGCTGAGGAGGGGCCAGACC	-	TAAGATGCTGAGGAGGGGCCAGACC	novel	none	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	TAAGATGCTGAGGAGGGGCCAGACC	TAAGATGCTGAGGAGGGGCCAGACC	-	-	TAAGATGCTGAGGAGGGGCCAGACC	TAAGATGCTGAGGAGGGGCCAGACC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	39544e41-a762-442a-93e9-5382dbc7adc2	fcbb2210-a077-4fd2-aee8-2e29b3e9ecbd
