Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
RERE	473	broad.mit.edu	36	1	8341536	8341536	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
MOV10	4343	broad.mit.edu	36	1	113019167	113019167	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
PCDH15	65217	broad.mit.edu	36	10	55747164	55747164	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
MYOF	26509	broad.mit.edu	36	10	95106547	95106547	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
CD163	9332	broad.mit.edu	36	12	7526584	7526584	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
A2ML1	144568	broad.mit.edu	36	12	8907744	8907744	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
KRT72	140807	broad.mit.edu	36	12	51267860	51267860	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
SHC4	399694	broad.mit.edu	36	15	46922940	46922940	+	Nonsense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
TLN2	83660	broad.mit.edu	36	15	60899796	60899796	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
CNOT1	23019	broad.mit.edu	36	16	57146908	57146908	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
TP53	7157	broad.mit.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
ZNF521	25925	broad.mit.edu	36	18	21059632	21059632	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
CDH2	1000	broad.mit.edu	36	18	23819523	23819523	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
FSHR	2492	broad.mit.edu	36	2	49044418	49044418	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
RETSAT	54884	broad.mit.edu	36	2	85431525	85431525	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
ATIC	471	broad.mit.edu	36	2	215885547	215885547	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
TCF20	6942	broad.mit.edu	36	22	40937616	40937616	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
ACVR2B	93	broad.mit.edu	36	3	38493821	38493821	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
KIAA1524	57650	broad.mit.edu	36	3	109753800	109753800	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
STXBP5L	9515	broad.mit.edu	36	3	122458805	122458805	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
LAMP3	27074	broad.mit.edu	36	3	184354780	184354780	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
C3orf43	255798	broad.mit.edu	36	3	197719526	197719526	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
PPP2R2C	5522	broad.mit.edu	36	4	6425275	6425275	+	Silent	SNP	G	G	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
ANAPC4	29945	broad.mit.edu	36	4	25001688	25001688	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
EPHA5	2044	broad.mit.edu	36	4	65899765	65899765	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
CCT5	22948	broad.mit.edu	36	5	10316335	10316335	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
DNAH5	1767	broad.mit.edu	36	5	13823873	13823873	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
CUL9	23113	broad.mit.edu	36	6	43260447	43260447	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
ABCC10	89845	broad.mit.edu	36	6	43510542	43510542	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
ZNF746	155061	broad.mit.edu	36	7	148805656	148805656	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
DLC1	10395	broad.mit.edu	36	8	13004676	13004676	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
INTS10	55174	broad.mit.edu	36	8	19719442	19719442	+	Silent	SNP	A	A	G	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
DMRT1	1761	broad.mit.edu	36	9	884144	884144	+	Silent	SNP	T	T	A	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
TRUB2	26995	broad.mit.edu	36	9	130111720	130111720	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ca5ac140-34e2-4684-ad12-65ae699172fc	109b0968-55fe-43bf-96b6-c1c32b6b7400
