Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
NBPF1	55672	broad.mit.edu	36	1	16780516	16780516	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
E2F2	1870	broad.mit.edu	36	1	23720971	23720971	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GPATCH4	54865	broad.mit.edu	36	1	154835451	154835451	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
CUBN	8029	broad.mit.edu	36	10	16951724	16951724	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
YME1L1	10730	broad.mit.edu	36	10	27465289	27465289	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ANKRD30A	91074	broad.mit.edu	36	10	37491772	37491772	+	Silent	SNP	A	A	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ANK3	288	broad.mit.edu	36	10	61637875	61637875	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PLCE1	51196	broad.mit.edu	36	10	95996007	95996007	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SLIT1	6585	broad.mit.edu	36	10	98806955	98806955	+	Splice_Site	SNP	A	A	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
NRAP	4892	broad.mit.edu	36	10	115367224	115367224	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MRPL23	6150	broad.mit.edu	36	11	1928740	1928740	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TRIM34	53840	broad.mit.edu	36	11	5610315	5610315	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
OR5P2	120065	broad.mit.edu	36	11	7774842	7774842	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
HPS5	11234	broad.mit.edu	36	11	18261972	18261972	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
KCNA4	3739	broad.mit.edu	36	11	29990600	29990600	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
RAG1	5896	broad.mit.edu	36	11	36554336	36554336	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PRPF19	27339	broad.mit.edu	36	11	60425396	60425396	+	Nonsense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
NUMA1	4926	broad.mit.edu	36	11	71402374	71402374	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
NUMA1	4926	broad.mit.edu	36	11	71403242	71403242	+	Silent	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
OR6X1	390260	broad.mit.edu	36	11	123129939	123129939	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PKNOX2	63876	broad.mit.edu	36	11	124805219	124805219	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
CCDC77	84318	broad.mit.edu	36	12	420055	420055	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
HSN2	378465	broad.mit.edu	36	12	848090	848090	+	Silent	SNP	A	A	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
KRT78	196374	broad.mit.edu	36	12	51524660	51524660	+	Nonsense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
EP400	57634	broad.mit.edu	36	12	131063515	131063515	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
BRCA2	675	broad.mit.edu	36	13	31812137	31812137	+	Nonsense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SLC39A2	29986	broad.mit.edu	36	14	20537526	20537526	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
LRRC16B	90668	broad.mit.edu	36	14	23595742	23595742	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
LRFN5	145581	broad.mit.edu	36	14	41443117	41443117	+	Nonsense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GOLGA5	9950	broad.mit.edu	36	14	92352454	92352454	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TMED3	23423	broad.mit.edu	36	15	77393308	77393308	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MPG	4350	broad.mit.edu	36	16	75510	75510	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GPR97	222487	broad.mit.edu	36	16	56275888	56275888	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
CDH5	1003	broad.mit.edu	36	16	64970832	64970832	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
COG8	84342	broad.mit.edu	36	16	67930898	67930898	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TAF1C	9013	broad.mit.edu	36	16	82770694	82770694	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PLD2	5338	broad.mit.edu	36	17	4658070	4658070	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ZBTB4	57659	broad.mit.edu	36	17	7307108	7307108	+	Silent	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TP53	7157	broad.mit.edu	36	17	7518236	7518236	+	Missense_Mutation	SNP	A	A	T	rs28934577	unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MYH2	4620	broad.mit.edu	36	17	10383329	10383329	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SGCA	6442	broad.mit.edu	36	17	45600918	45600918	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SLC25A23	79085	broad.mit.edu	36	19	6405349	6405349	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
OR7D4	125958	broad.mit.edu	36	19	9186271	9186271	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
BST2	684	broad.mit.edu	36	19	17376202	17376202	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
CD22	933	broad.mit.edu	36	19	40520738	40520738	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
CD22	933	broad.mit.edu	36	19	40528449	40528449	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ZFP112	7771	broad.mit.edu	36	19	49523684	49523684	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GRIN2D	2906	broad.mit.edu	36	19	53609175	53609175	+	Splice_Site	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SNTG2	54221	broad.mit.edu	36	2	1069341	1069341	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
LHCGR	3973	broad.mit.edu	36	2	48768695	48768695	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
USP34	9736	broad.mit.edu	36	2	61346784	61346784	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
C2orf86	51057	broad.mit.edu	36	2	63485059	63485059	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MARCO	8685	broad.mit.edu	36	2	119456295	119456295	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MGAT5	4249	broad.mit.edu	36	2	134728478	134728478	+	Nonsense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SCN3A	6328	broad.mit.edu	36	2	165655606	165655606	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TTN	7273	broad.mit.edu	36	2	179308659	179308659	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PTH2R	5746	broad.mit.edu	36	2	209066555	209066555	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MAP2	4133	broad.mit.edu	36	2	210267648	210267648	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
USP37	57695	broad.mit.edu	36	2	219032778	219032778	+	Silent	SNP	C	C	T	rs71415835	unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ASB18	401036	broad.mit.edu	36	2	236814733	236814733	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
C20orf12	55184	broad.mit.edu	36	20	18377628	18377628	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
BPIL1	80341	broad.mit.edu	36	20	31064363	31064363	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SLC7A4	6545	broad.mit.edu	36	22	19714504	19714504	+	Silent	SNP	C	C	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
KBTBD5	131377	broad.mit.edu	36	3	42702426	42702426	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
CCR3	1232	broad.mit.edu	36	3	46281819	46281819	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GRK7	131890	broad.mit.edu	36	3	143009181	143009181	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
WDR49	151790	broad.mit.edu	36	3	168737372	168737372	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TP63	8626	broad.mit.edu	36	3	190939252	190939252	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
FAT4	79633	broad.mit.edu	36	4	126461302	126461302	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
IQGAP2	10788	broad.mit.edu	36	5	76024953	76024953	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PCDHA2	56146	broad.mit.edu	36	5	140155966	140155966	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
FBXO38	81545	broad.mit.edu	36	5	147787703	147787703	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
LARP1	23367	broad.mit.edu	36	5	154163167	154163167	+	Splice_Site	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
HLA-DRA	3122	broad.mit.edu	36	6	32518414	32518414	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ANKS1A	23294	broad.mit.edu	36	6	35159259	35159259	+	Splice_Site	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GLO1	2739	broad.mit.edu	36	6	38778750	38778750	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TCTE1	202500	broad.mit.edu	36	6	44358180	44358180	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SUPT3H	8464	broad.mit.edu	36	6	45079481	45079481	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GCLC	2729	broad.mit.edu	36	6	53481376	53481376	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
KIAA1244	57221	broad.mit.edu	36	6	138572856	138572856	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TULP4	56995	broad.mit.edu	36	6	158830742	158830742	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
WIPF3	644150	broad.mit.edu	36	7	29882023	29882023	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ELMO1	9844	broad.mit.edu	36	7	37265361	37265361	+	Silent	SNP	T	T	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
AMPH	273	broad.mit.edu	36	7	38472374	38472374	+	Splice_Site	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MAGI2	9863	broad.mit.edu	36	7	78474351	78474351	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SEMA3A	10371	broad.mit.edu	36	7	83602188	83602188	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PPP1R3A	5506	broad.mit.edu	36	7	113346029	113346029	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
UBXN2B	137886	broad.mit.edu	36	8	59521102	59521102	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
VPS13B	157680	broad.mit.edu	36	8	100956946	100956946	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
CHRAC1	54108	broad.mit.edu	36	8	141590861	141590861	+	Silent	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
C8orf31	286122	broad.mit.edu	36	8	144196018	144196018	+	Silent	SNP	C	C	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
FLJ46321	389763	broad.mit.edu	36	9	83797393	83797393	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GRIN3A	116443	broad.mit.edu	36	9	103472336	103472336	+	Silent	SNP	A	A	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TUBB2C	10383	broad.mit.edu	36	9	139257713	139257713	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
WWC3	55841	broad.mit.edu	36	X	10022214	10022214	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ELK1	2002	broad.mit.edu	36	X	47383596	47383596	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
HUWE1	10075	broad.mit.edu	36	X	53624524	53624524	+	Nonsense_Mutation	SNP	G	G	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
NONO	4841	broad.mit.edu	36	X	70428478	70428478	+	Silent	SNP	A	A	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PHKA1	5255	broad.mit.edu	36	X	71772949	71772949	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
ARMCX1	51309	broad.mit.edu	36	X	100694665	100694665	+	Silent	SNP	C	C	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
LRCH2	57631	broad.mit.edu	36	X	114311156	114311156	+	Silent	SNP	T	T	C	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GPR119	139760	broad.mit.edu	36	X	129346511	129346511	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
SLC9A6	10479	broad.mit.edu	36	X	134920373	134920373	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TTLL7	79739	broad.mit.edu	36	1	84180810	84180810	+	Frame_Shift_Del	DEL	A	-	A	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MADD	8567	broad.mit.edu	36	11	47254216	47254219	+	Frame_Shift_Del	DEL	CTTC	-	CTTC	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	CTTC	CTTC	-	-	CTTC	CTTC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
PRPF39	55015	broad.mit.edu	36	14	44653189	44653191	+	In_Frame_Del	DEL	TAA	-	TAA	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	TAA	TAA	-	-	TAA	TAA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
GPR179	440435	broad.mit.edu	36	17	33737073	33737098	+	Frame_Shift_Del	DEL	CGGAATCTGCTGGGGCAGTGGTCTCC	-	-	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	CGGAATCTGCTGGGGCAGTGGTCTCC	CGGAATCTGCTGGGGCAGTGGTCTCC	-	-	CGGAATCTGCTGGGGCAGTGGTCTCC	CGGAATCTGCTGGGGCAGTGGTCTCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
TGM3	7053	broad.mit.edu	36	20	2268586	2268605	+	Frame_Shift_Del	DEL	GCTGATGGTGGAGGGAAGCG	-	GCTGATGGTGGAGGGAAGCG	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	GCTGATGGTGGAGGGAAGCG	GCTGATGGTGGAGGGAAGCG	-	-	GCTGATGGTGGAGGGAAGCG	GCTGATGGTGGAGGGAAGCG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
RFTN1	23180	broad.mit.edu	36	3	16333370	16333373	+	Frame_Shift_Del	DEL	ACTT	-	-	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	ACTT	ACTT	-	-	ACTT	ACTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
FAT4	79633	broad.mit.edu	36	4	126586986	126586991	+	In_Frame_Del	DEL	AAAGAT	-	-	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	AAAGAT	AAAGAT	-	-	AAAGAT	AAAGAT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
MSN	4478	broad.mit.edu	36	X	64875673	64875678	+	In_Frame_Del	DEL	GGCAGA	-	GGCAGA	novel	none	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	GGCAGA	GGCAGA	-	-	GGCAGA	GGCAGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4d2525bf-2a2c-4170-935a-f38e92a8bd4c	4ca1ad27-23c5-4d83-9ffd-20db10d6239c
