Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SLC6A17	388662	genome.wustl.edu	36	1	110539769	110539780	+	In_Frame_Del	DEL	TTCGTCCAGCGC	TTCGTCCAGCGC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TTCGTCCAGCGC	TTCGTCCAGCGC	TTCGTCCAGCGC	-	TTCGTCCAGCGC	TTCGTCCAGCGC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	110539769	110539780	TTCGTCCAGCGC	-	DEL	SLC6A17	NM_001010898	human	genbank	54_36p	1	validated	in_frame_del	c.1531_1542	p.FVQR511in_frame_del	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.996	HMMPfam_SNF	HMMPfam_SNF	(deletion:cds_exon[110539731;110539890])	no_errors
C1orf103	55791	genome.wustl.edu	36	1	111292268	111292268	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	111292268	111292268	G	C	SNP	C1orf103	NM_018372	human	genbank	54_36p	-1	validated	missense	c.2146	p.Q716E	0.69	NULL	-	-	no_errors
NPPB	4879	genome.wustl.edu	36	1	11841068	11841068	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	11841068	11841068	C	A	SNP	NPPB	NM_002521	human	genbank	54_36p	-1	reviewed	nonsense	c.178	p.E60*		NULL	-	-	no_errors
FCGR1A	2209	genome.wustl.edu	36	1	148028407	148028407	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	148028407	148028407	T	C	SNP	FCGR1A	NM_000566	human	genbank	54_36p	1	reviewed	missense	c.733	p.Y245H	0.58	NULL	-	-	no_errors
MTMR11	10903	genome.wustl.edu	36	1	148174218	148174218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	148174218	148174218	C	G	SNP	MTMR11	ENST00000361405	human	ensembl	54_36p	-1	known	missense	c.84	p.E28D	1	NULL	-	-	no_start_codon
GON4L	54856	genome.wustl.edu	36	1	153993466	153993466	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	153993466	153993466	C	T	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	silent	c.5424	p.L1808	1	NULL	-	-	no_errors
C1orf92	149499	genome.wustl.edu	36	1	155164045	155164045	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	155164045	155164045	G	A	SNP	C1orf92	NM_144702	human	genbank	54_36p	1	validated	missense	c.151	p.D51N	0.999	NULL	-	-	no_errors
ARID1A	8289	genome.wustl.edu	36	1	26960004	26960004	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	26960004	26960004	C	G	SNP	ARID1A	NM_006015	human	genbank	54_36p	1	reviewed	nonsense	c.1991	p.S664*	1	NULL	-	-	no_errors
FNDC5	252995	genome.wustl.edu	36	1	33106019	33106019	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	33106019	33106019	T	A	SNP	FNDC5	NM_153756	human	genbank	54_36p	-1	provisional	missense	c.196	p.M66L	1	NULL	-	-	no_errors
DFFB	1677	genome.wustl.edu	36	1	3772119	3772119	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	3772119	3772119	T	C	SNP	DFFB	ENST00000378212	human	ensembl	54_36p	1	known	silent	c.294	p.P98		NULL	-	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46274325	46274325	+	Nonstop_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	46274325	46274325	G	C	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	nonstop	c.5397	p.*1799Y	0.78	NULL	-	-	no_errors
USP24	23358	genome.wustl.edu	36	1	55316852	55316852	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	55316852	55316852	A	G	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	missense	c.6781	p.Y2261H	1	NULL	-	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70291391	70291391	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	70291391	70291391	T	A	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.4091	p.V1364E	1	NULL	HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_LRR_1;superfamily_RNI-like;superfamily_L domain-like	-	no_errors
TGFBR3	7049	genome.wustl.edu	36	1	91936263	91936263	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	1	91936263	91936263	C	G	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	missense	c.2300	p.S767T	0.23	NULL	HMMPfam_Zona_pellucida	-	no_errors
LZTS2	84445	genome.wustl.edu	36	10	102753671	102753673	+	In_Frame_Del	DEL	TCC	TCC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TCC	TCC	TCC	-	TCC	TCC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	102753671	102753673	TCC	-	DEL	LZTS2	NM_032429	human	genbank	54_36p	1	provisional	in_frame_del	c.826_828	p.S279in_frame_del	0.987:0.996:0.980	NULL	-	(deletion:cds_exon[102753254;102753913])	no_errors
TAF5	6877	genome.wustl.edu	36	10	105132993	105132993	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	105132993	105132993	C	G	SNP	TAF5	NM_006951	human	genbank	54_36p	1	reviewed	missense	c.1543	p.L515V	1	NULL	HMMPfam_WD40;HMMPfam_TFIID_90kDa;superfamily_WD40 repeat-like	-	no_errors
CALHM1	255022	genome.wustl.edu	36	10	105208155	105208155	+	Missense_Mutation	SNP	A	A	C		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	105208155	105208155	A	C	SNP	CALHM1	NM_001001412	human	genbank	54_36p	-1	validated	missense	c.344	p.V115G	1	NULL	-	-	no_errors
NSUN6	221078	genome.wustl.edu	36	10	18980066	18980066	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	18980066	18980066	C	A	SNP	NSUN6	NM_182543	human	genbank	54_36p	-1	validated	nonsense	c.73	p.E25*	1	NULL	-	-	no_errors
LDB3	11155	genome.wustl.edu	36	10	88441666	88441666	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	88441666	88441666	C	T	SNP	LDB3	NM_007078	human	genbank	54_36p	1	reviewed	silent	c.723	p.S241	1	NULL	-	-	no_errors
PTEN	5728	genome.wustl.edu	36	10	89701885	89701885	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	89701885	89701885	G	T	SNP	PTEN	NM_000314	human	genbank	54_36p	1	reviewed	missense	c.523	p.V175L	1	NULL	DSPc;HMMPfam_DSPc;C2 domain (Calcium/lipid-binding domain CaLB);superfamily_C2 domain (Calcium/lipid-binding domain CaLB);(Phosphotyrosine protein) phosphatases II;superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
LOC119358	119358	genome.wustl.edu	36	10	91728509	91728509	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	91728509	91728509	G	A	SNP	LOC119358	XM_061427	human	genbank	54_36p	1	model	missense	c.56	p.R19Q	1	NULL	HMMPfam_LSM;superfamily_Sm-like ribonucleoproteins	-	no_errors
LOC387703	387703	genome.wustl.edu	36	10	94958431	94958431	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	94958431	94958431	G	T	SNP	LOC387703	XR_016730	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CYP2C9	1559	genome.wustl.edu	36	10	96721970	96721970	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	96721970	96721970	G	A	SNP	CYP2C9	NM_000771	human	genbank	54_36p	1	reviewed	silent	c.939	p.L313	0.99	HMMPfam_p450	HMMPfam_p450;superfamily_Cytochrome P450	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98814622	98814622	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	10	98814622	98814622	G	C	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.487	p.Q163E	1	HMMPfam_LRR_1	HMMPfam_LRRNT;HMMPfam_LRRCT;HMMPfam_LRR_1;HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_L domain-like;superfamily_EGF/Laminin	-	no_errors
MMP8	4317	genome.wustl.edu	36	11	102092270	102092270	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	102092270	102092270	C	A	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	missense	c.875	p.R292L	0.98	HMMPfam_Hemopexin	"HMMPfam_Hemopexin;superfamily_Hemopexin-like domain;HMMPfam_Peptidase_M10;HMMPfam_PG_binding_1;superfamily_PGBD-like;superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
CREB3L1	90993	genome.wustl.edu	36	11	46294513	46294513	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	46294513	46294513	G	T	SNP	CREB3L1	ENST00000288400	human	ensembl	54_36p	1	known	splice_site	c.1131+1	e9+1	1	-	-	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47401073	47401073	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	47401073	47401073	T	G	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	missense	c.619	p.N207H	1	NULL	-	-	no_errors
OR4C46	119749	genome.wustl.edu	36	11	51372438	51372438	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	51372438	51372438	A	T	SNP	OR4C46	NM_001004703	human	genbank	54_36p	1	provisional	missense	c.581	p.E194V		NULL	-	-	no_errors
OR5D16	390144	genome.wustl.edu	36	11	55362906	55362906	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	55362906	55362906	G	C	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.103	p.A35P		NULL	-	-	no_errors
PGA3	643834	genome.wustl.edu	36	11	60728299	60728299	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	60728299	60728299	C	A	SNP	PGA3	NM_001079807	human	genbank	54_36p	1	validated	silent	c.201	p.P67	0.19	NULL	-	-	no_errors
SLC22A11	55867	genome.wustl.edu	36	11	64080374	64080374	+	Silent	SNP	C	C	T		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	64080374	64080374	C	T	SNP	SLC22A11	NM_018484	human	genbank	54_36p	1	reviewed	silent	c.327	p.D109	0.038	NULL	-	-	no_errors
DHCR7	1717	genome.wustl.edu	36	11	70830965	70830965	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	70830965	70830965	G	A	SNP	DHCR7	NM_001360	human	genbank	54_36p	-1	validated	missense	c.404	p.T135I	1	NULL	HMMPfam_ERG4_ERG24	-	no_errors
FOLR1	2348	genome.wustl.edu	36	11	71584666	71584666	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	71584666	71584666	G	A	SNP	FOLR1	NM_000802	human	genbank	54_36p	1	reviewed	missense	c.571	p.E191K	0.38	NULL	-	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108138838	108138838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	108138838	108138838	C	G	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.3383	p.T1128R	0.39	HMMPfam_ACC_central	HMMPfam_Carboxyl_trans;HMMPfam_Biotin_lipoyl;HMMPfam_CPSase_L_D2;HMMPfam_CPSase_L_chain;HMMPfam_Biotin_carb_C;superfamily_Single hybrid motif;superfamily_Rudiment single hybrid motif;HMMPfam_ACC_central;superfamily_ClpP/crotonase;superfamily_PreATP-grasp domain;superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
SH2B3	10019	genome.wustl.edu	36	12	110369574	110369574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	110369574	110369574	C	G	SNP	SH2B3	NM_005475	human	genbank	54_36p	1	validated	missense	c.1079	p.S360C	1	NULL	HMMPfam_SH2,HMMPfam_PH,HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
KNTC1	9735	genome.wustl.edu	36	12	121618772	121618772	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	121618772	121618772	G	T	SNP	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	missense	c.1616	p.W539L	1	NULL	superfamily_WD40 repeat-like;superfamily_PAH2 domain;superfamily_Actin-like ATPase domain	-	no_errors
BRI3BP	140707	genome.wustl.edu	36	12	124063063	124063063	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	124063063	124063063	C	A	SNP	BRI3BP	NM_080626	human	genbank	54_36p	1	validated	missense	c.244	p.L82M	0.75	NULL	-	-	no_errors
STK38L	23012	genome.wustl.edu	36	12	27353314	27353314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	27353314	27353314	G	C	SNP	STK38L	NM_015000	human	genbank	54_36p	1	validated	missense	c.310	p.V104L	1	HMMPfam_Pkinase	HMMPfam_Pkinase;HMMPfam_Pkinase_C;superfamily_Protein kinase-like (PK-like)	-	no_errors
HNRNPA1	3178	genome.wustl.edu	36	12	52961503	52961503	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	52961503	52961503	G	A	SNP	HNRNPA1	NM_031157	human	genbank	54_36p	1	reviewed	missense	c.82	p.E28K	1	NULL	-	-	no_errors
NCKAP1L	3071	genome.wustl.edu	36	12	53216270	53216270	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	53216270	53216270	C	G	SNP	NCKAP1L	NM_005337	human	genbank	54_36p	1	reviewed	missense	c.3047	p.S1016C	0.34	NULL	superfamily_Nuclear receptor ligand-binding domain	-	no_errors
ATN1	1822	genome.wustl.edu	36	12	6918599	6918599	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	6918599	6918599	C	T	SNP	ATN1	NM_001007026	human	genbank	54_36p	1	reviewed	missense	c.3212	p.A1071V	1	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
PPFIA2	8499	genome.wustl.edu	36	12	80271202	80271202	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	80271202	80271202	T	A	SNP	PPFIA2	NM_003625	human	genbank	54_36p	-1	reviewed	silent	c.1821	p.G607	1	NULL	HMMPfam_SAM_1,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	86978787	86978787	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	12	86978787	86978787	A	G	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.6473	p.L2158S	0.61	NULL	superfamily_Spectrin repeat;superfamily_Translin	-	no_errors
TPTE2	93492	genome.wustl.edu	36	13	18954660	18954660	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	13	18954660	18954660	T	G	SNP	TPTE2	NM_199254	human	genbank	54_36p	-1	validated	missense	c.147	p.E49D	0	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_Voltage-gated potassium channels	-	no_errors
MTUS2	23281	genome.wustl.edu	36	13	28796764	28796764	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	13	28796764	28796764	G	A	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	1	validated	missense	c.2851	p.A951T	0.07	NULL	-	-	no_errors
RFXAP	5994	genome.wustl.edu	36	13	36292092	36292092	+	Nonsense_Mutation	SNP	G	G	T		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	13	36292092	36292092	G	T	SNP	RFXAP	NM_000538	human	genbank	54_36p	1	reviewed	nonsense	c.598	p.E200*	1	NULL	-	-	no_errors
CLEC14A	161198	genome.wustl.edu	36	14	37793534	37793534	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	14	37793534	37793534	T	C	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	missense	c.1445	p.E482G	0.004	NULL	-	-	no_errors
GPX2	2877	genome.wustl.edu	36	14	64476019	64476019	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	14	64476019	64476019	G	C	SNP	GPX2	NM_002083	human	genbank	54_36p	-1	reviewed	silent	c.513	p.R171	1	NULL	HMMPfam_GSHPx;superfamily_Thioredoxin-like	-	pseudogene
DCAF5	8816	genome.wustl.edu	36	14	68591701	68591701	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	14	68591701	68591701	G	T	SNP	WDR22	NM_003861	human	genbank	54_36p	-1	validated	silent	c.1455	p.P485	1	NULL	HMMPfam_WD40;superfamily_WD40 repeat-like	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39828708	39828709	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	-	-	-	A	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	15	39828708	39828709	-	A	INS	MGA	NM_001080541	human	genbank	54_36p	1	provisional	frame_shift_ins	c.5758_5759	p.V1920fs	1.000:1.000	NULL	-	-	no_errors
EHD4	30844	genome.wustl.edu	36	15	40033268	40033268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	15	40033268	40033268	G	A	SNP	EHD4	NM_139265	human	genbank	54_36p	-1	provisional	silent	c.399	p.N133	1	NULL	-	-	no_errors
DIS3L	115752	genome.wustl.edu	36	15	64405758	64405758	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	15	64405758	64405758	T	G	SNP	DIS3L	NM_133375	human	genbank	54_36p	1	validated	splice_site	c.1952+2	e11+2	1	-	-	-	no_errors
ENSG00000222964	0	genome.wustl.edu	36	15	73864775	73864775	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	15	73864775	73864775	C	T	SNP	ENSG00000222964	ENST00000411032	human	ensembl	54_36p	1	novel	rna	NULL	NULL	0.2	-	-	-	no_errors
BTBD1	53339	genome.wustl.edu	36	15	81516183	81516183	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	15	81516183	81516183	G	C	SNP	BTBD1	NM_025238	human	genbank	54_36p	-1	reviewed	missense	c.520	p.H174D	1	NULL	-	-	no_errors
PDE8A	5151	genome.wustl.edu	36	15	83411368	83411368	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	15	83411368	83411368	G	A	SNP	PDE8A	NM_002605	human	genbank	54_36p	1	validated	silent	c.363	p.L121	1	HMMPfam_Response_reg	HMMPfam_Response_reg;HMMPfam_PDEase_I;superfamily_CheY-like;HMMPfam_PAS;HMMPfam_PDE8;superfamily_HD-domain/PDEase-like;superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
MAN2A2	4122	genome.wustl.edu	36	15	89251066	89251066	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	15	89251066	89251066	C	G	SNP	MAN2A2	NM_006122	human	genbank	54_36p	1	validated	missense	c.928	p.L310V	1	HMMPfam_Glyco_hydro_38	HMMPfam_Glyco_hydro_38;superfamily_Galactose mutarotase-like;superfamily_Glycoside hydrolase/deacetylase;HMMPfam_Glyco_hydro_38C;HMMPfam_Alpha-mann_mid;superfamily_Families 57/38 glycoside transferase middle domain	-	no_errors
LOC642451	642451	genome.wustl.edu	36	16	11028662	11028662	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	11028662	11028662	A	C	SNP	LOC642451	XM_926336	human	genbank	54_36p	1	model	missense	c.308	p.E103A	0.89	NULL	-	-	pseudogene
SEPX1	51734	genome.wustl.edu	36	16	1930805	1930805	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	1930805	1930805	G	T	SNP	SEPX1	ENST00000399753	human	ensembl	54_36p	-1	known	missense	c.658	p.Q220K	1	NULL	-	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	21000511	21000511	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	21000511	21000511	T	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.2916	p.E972D	0.39	NULL	-	-	no_errors
LOC100131998	100131998	genome.wustl.edu	36	16	22348687	22348687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	22348687	22348687	C	T	SNP	LOC100131998	XM_001725049	human	genbank	54_36p	-1	model	missense	c.152	p.G51E	1	NULL	-	-	pseudogene
SALL1	6299	genome.wustl.edu	36	16	49731904	49731904	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	49731904	49731904	G	T	SNP	SALL1	NM_002968	human	genbank	54_36p	-1	reviewed	missense	c.1730	p.P577H	1	NULL	HMMPfam_zf-C2H2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SEC14L5	9717	genome.wustl.edu	36	16	4995935	4995935	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	4995935	4995935	A	G	SNP	SEC14L5	NM_014692	human	genbank	54_36p	1	validated	missense	c.1322	p.E441G	1	NULL	-	-	no_errors
NLRC5	84166	genome.wustl.edu	36	16	55646900	55646900	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	55646900	55646900	G	A	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	silent	c.3714	p.L1238	0.24	NULL	HMMPfam_LRR_1;HMMPfam_NACHT;superfamily_RNI-like;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PMFBP1	83449	genome.wustl.edu	36	16	70731875	70731875	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	16	70731875	70731875	C	T	SNP	PMFBP1	NM_031293	human	genbank	54_36p	-1	provisional	silent	c.744	p.K248	1	NULL	-	-	no_errors
MYH8	4626	genome.wustl.edu	36	17	10244527	10244527	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	17	10244527	10244527	G	T	SNP	MYH8	NM_002472	human	genbank	54_36p	-1	validated	missense	c.3640	p.Q1214K	1	HMMPfam_Myosin_tail_1	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_t-snare proteins;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RHOT1	55288	genome.wustl.edu	36	17	27527332	27527332	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	17	27527332	27527332	G	C	SNP	RHOT1	NM_001033568	human	genbank	54_36p	1	validated	missense	c.316	p.D106H	1	HMMPfam_Miro	HMMPfam_efhand;HMMPfam_EF_assoc_1;HMMPfam_EF_assoc_2;HMMPfam_Miro;superfamily_EF-hand;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDK5R1	8851	genome.wustl.edu	36	17	27839273	27839273	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	17	27839273	27839273	C	T	SNP	CDK5R1	NM_003885	human	genbank	54_36p	1	reviewed	silent	c.522	p.P174	1	HMMPfam_CDK5_activator	HMMPfam_CDK5_activator;superfamily_Cyclin-like	-	no_errors
DDX52	11056	genome.wustl.edu	36	17	33064181	33064181	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	17	33064181	33064181	C	A	SNP	DDX52	NM_007010	human	genbank	54_36p	-1	validated	missense	c.739	p.A247S	1	HMMPfam_DEAD	HMMPfam_Helicase_C;HMMPfam_DEAD;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIF18B	146909	genome.wustl.edu	36	17	40366915	40366915	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	17	40366915	40366915	T	C	SNP	KIF18B	NM_001080443	human	genbank	54_36p	-1	provisional	missense	c.964	p.T322A	0.999	NULL	-	-	no_errors
PFAS	5198	genome.wustl.edu	36	17	8099559	8099559	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	17	8099559	8099559	G	A	SNP	PFAS	NM_012393	human	genbank	54_36p	1	reviewed	silent	c.399	p.P133		NULL	HMMPfam_AIRS;HMMPfam_AIRS_C;superfamily_FGAM synthase PurL linker domain;superfamily_Class I glutamine amidotransferase-like;superfamily_PurM N-terminal domain-like;superfamily_PurM C-terminal domain-like;superfamily_PurS-like	-	no_errors
CIDEA	1149	genome.wustl.edu	36	18	12264107	12264107	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	18	12264107	12264107	C	A	SNP	CIDEA	NM_198289	human	genbank	54_36p	1	reviewed	missense	c.448	p.P150T	0.33	NULL	HMMPfam_CIDE-N;superfamily_CAD  PB1 domains	-	no_errors
MC5R	4161	genome.wustl.edu	36	18	13816421	13816421	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	18	13816421	13816421	C	T	SNP	MC5R	NM_005913	human	genbank	54_36p	1	provisional	silent	c.657	p.I219	0.59	NULL	-	-	no_errors
NPC1	257641	genome.wustl.edu	36	18	19372552	19372552	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	18	19372552	19372552	A	C	SNP	NPC1	NM_000271	human	genbank	54_36p	-1	validated	missense	c.2993	p.F998C	1	HMMPfam_Patched	HMMPfam_Patched;superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
MYOM1	8736	genome.wustl.edu	36	18	3069264	3069264	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	18	3069264	3069264	G	C	SNP	MYOM1	NM_003803	human	genbank	54_36p	-1	reviewed	missense	c.4561	p.P1521A	1	NULL	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;superfamily_Immunoglobulin	-	no_errors
ALPK2	115701	genome.wustl.edu	36	18	54356376	54356376	+	Missense_Mutation	SNP	C	C	G		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	18	54356376	54356376	C	G	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	missense	c.2023	p.E675Q	0.053	NULL	-	-	no_errors
CDH19	28513	genome.wustl.edu	36	18	62329838	62329838	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	18	62329838	62329838	T	A	SNP	CDH19	NM_021153	human	genbank	54_36p	-1	reviewed	missense	c.1523	p.N508I	0.78	HMMPfam_Cadherin	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
ZNF833P	401898	genome.wustl.edu	36	19	11657542	11657542	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	11657542	11657542	T	A	SNP	ZNF833	NM_001013691	human	genbank	54_36p	1	validated	missense	c.501	p.S167R	0.01	NULL	-	-	no_errors
DAND5	199699	genome.wustl.edu	36	19	12941509	12941509	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	12941509	12941509	T	G	SNP	DAND5	NM_152654	human	genbank	54_36p	1	reviewed	missense	c.35	p.L12R	0.11	NULL	-	-	no_errors
DCAF15	90379	genome.wustl.edu	36	19	13931608	13931608	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	13931608	13931608	A	G	SNP	LOC90379	NM_138353	human	genbank	54_36p	1	predicted	silent	c.1341	p.T447	0.71	NULL	-	-	no_errors
OR10H4	126541	genome.wustl.edu	36	19	15921303	15921303	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	15921303	15921303	G	A	SNP	OR10H4	NM_001004465	human	genbank	54_36p	1	validated	silent	c.486	p.T162		NULL	-	-	no_errors
ANO8	57719	genome.wustl.edu	36	19	17299567	17299567	+	Silent	SNP	G	G	A		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	17299567	17299567	G	A	SNP	ANO8	NM_020959	human	genbank	54_36p	-1	provisional	silent	c.2349	p.D783	1	NULL	-	-	no_errors
NCAN	1463	genome.wustl.edu	36	19	19196156	19196156	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	19196156	19196156	G	A	SNP	NCAN	NM_004386	human	genbank	54_36p	1	validated	missense	c.692	p.R231H	1	HMMPfam_Xlink	HMMPfam_Sushi;HMMPfam_Xlink;HMMPfam_Lectin_C;HMMPfam_EGF;superfamily_Immunoglobulin;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain	-	no_errors
CELF5	60680	genome.wustl.edu	36	19	3233187	3233187	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	3233187	3233187	T	C	SNP	BRUNOL5	NM_021938	human	genbank	54_36p	1	reviewed	missense	c.814	p.F272L	1	NULL	HMMPfam_RRM_1;superfamily_RNA-binding domain RBD	-	no_errors
CCDC123	84902	genome.wustl.edu	36	19	38114236	38114236	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	38114236	38114236	T	A	SNP	CCDC123	NM_032816	human	genbank	54_36p	-1	validated	missense	c.968	p.H323L	1	NULL	-	-	no_errors
LRG1	116844	genome.wustl.edu	36	19	4489173	4489173	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	4489173	4489173	C	T	SNP	LRG1	NM_052972	human	genbank	54_36p	-1	validated	missense	c.823	p.V275M		NULL	-	-	no_errors
SHKBP1	92799	genome.wustl.edu	36	19	45781214	45781214	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	45781214	45781214	G	C	SNP	SHKBP1	NM_138392	human	genbank	54_36p	1	validated	missense	c.1031	p.G344A	1	NULL	-	-	no_errors
ZNF610	162963	genome.wustl.edu	36	19	57548776	57548776	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	57548776	57548776	C	T	SNP	ZNF610	NM_173530	human	genbank	54_36p	1	provisional	silent	c.93	p.I31	0.72	NULL	-	-	no_errors
LILRB4	11006	genome.wustl.edu	36	19	59867610	59867610	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	59867610	59867610	G	A	SNP	LILRB4	NM_006847	human	genbank	54_36p	1	reviewed	missense	c.517	p.A173T		HMMPfam_ig	HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
PNPLA6	10908	genome.wustl.edu	36	19	7525516	7525516	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	19	7525516	7525516	C	T	SNP	PNPLA6	NM_006702	human	genbank	54_36p	1	validated	silent	c.2427	p.D809	0.91	NULL	HMMPfam_cNMP_binding;superfamily_cAMP-binding domain-like;HMMPfam_Patatin;superfamily_FabD/lysophospholipase-like	-	no_errors
MARCO	8685	genome.wustl.edu	36	2	119445573	119445573	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	119445573	119445573	C	G	SNP	MARCO	NM_006770	human	genbank	54_36p	1	reviewed	silent	c.453	p.G151		NULL	-	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	140797959	140797960	+	Missense_Mutation	DNP	TC	TC	CT	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TC	TC	TC	CT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	140797959	140797960	TC	CT	DNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.12487_12486	p.I4163V	1.000:1.000	NULL	HMMPfam_Ldl_recept_a;HMMPfam_EGF;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_YWTD domain;HMMPfam_Ldl_recept_b;HMMPfam_NHL;superfamily_LDL receptor-like module	-	no_errors
PLCD4	84812	genome.wustl.edu	36	2	219205133	219205133	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	219205133	219205133	A	G	SNP	PLCD4	NM_032726	human	genbank	54_36p	1	provisional	missense	c.1303	p.K435E	1	HMMPfam_PI-PLC-X	HMMPfam_C2,HMMPfam_PI-PLC-X,HMMPfam_PI-PLC-Y,HMMPfam_PH,HMMPfam_efhand,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_EF-hand,superfamily_PH domain-like,superfamily_PLC-like phosphodiesterases	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237939079	237939079	+	Splice_Site	SNP	C	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	237939079	237939079	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	splice_site	c.5838+1	e11+1	1	-	-	-	no_errors
MLPH	79083	genome.wustl.edu	36	2	238113861	238113861	+	Missense_Mutation	SNP	G	G	C		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	238113861	238113861	G	C	SNP	MLPH	NM_024101	human	genbank	54_36p	1	reviewed	missense	c.1236	p.K412N	0	NULL	-	-	no_errors
KRT18P26	729634	genome.wustl.edu	36	2	44366890	44366890	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	44366890	44366890	C	G	SNP	KRT18P26	XR_039730	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
RPL23AP32	56969	genome.wustl.edu	36	2	54610021	54610021	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	54610021	54610021	C	T	SNP	RPL23AP32	NR_002229	human	genbank	54_36p	1	inferred	rna	NULL	NULL	1	-	-	-	pseudogene
RBL1	5933	genome.wustl.edu	36	20	35094482	35094482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	20	35094482	35094482	C	G	SNP	RBL1	NM_002895	human	genbank	54_36p	-1	reviewed	missense	c.2382	p.K794N	1	HMMPfam_RB_B	RB_B;HMMPfam_RB_B;RB_A;HMMPfam_RB_A	-	no_errors
APCDD1L	164284	genome.wustl.edu	36	20	56479111	56479111	+	Missense_Mutation	SNP	T	T	C		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	20	56479111	56479111	T	C	SNP	APCDD1L	NM_153360	human	genbank	54_36p	-1	provisional	missense	c.148	p.I50V	0.029	NULL	-	-	no_errors
SS18L1	26039	genome.wustl.edu	36	20	60173926	60173926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	20	60173926	60173926	C	T	SNP	SS18L1	NM_198935	human	genbank	54_36p	1	validated	missense	c.877	p.R293W	0.71	NULL	-	-	no_errors
LOC441957	441957	genome.wustl.edu	36	21	14058087	14058087	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	21	14058087	14058087	C	G	SNP	LOC441957	XR_016199	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
BRWD1	54014	genome.wustl.edu	36	21	39568229	39568229	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	21	39568229	39568229	C	A	SNP	BRWD1	NM_018963	human	genbank	54_36p	-1	reviewed	missense	c.1185	p.W395C	1	HMMPfam_WD40	HMMPfam_Bromodomain;HMMPfam_WD40;superfamily_WD40 repeat-like;superfamily_Bromodomain	-	no_errors
SGSM1	129049	genome.wustl.edu	36	22	23573735	23573735	+	Nonsense_Mutation	SNP	C	C	T		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	22	23573735	23573735	C	T	SNP	SGSM1	NM_001039948	human	genbank	54_36p	1	validated	nonsense	c.274	p.Q92*	1	NULL	-	-	no_errors
PDXP	57026	genome.wustl.edu	36	22	36391593	36391593	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	22	36391593	36391593	G	C	SNP	PDXP	NM_020315	human	genbank	54_36p	1	validated	missense	c.660	p.E220D	1	HMMPfam_Hydrolase	HMMPfam_Hydrolase;superfamily_HAD-like	-	no_errors
SLC9A10	285335	genome.wustl.edu	36	3	113471528	113471528	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	113471528	113471528	T	A	SNP	SLC9A10	NM_183061	human	genbank	54_36p	-1	validated	missense	c.700	p.M234L	0.82	HMMPfam_Na_H_Exchanger	HMMPfam_cNMP_binding;superfamily_cAMP-binding domain-like;HMMPfam_Ion_trans;HMMPfam_Na_H_Exchanger;superfamily_Voltage-gated potassium channels	-	no_errors
CCDC80	151887	genome.wustl.edu	36	3	113831719	113831719	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	113831719	113831719	T	G	SNP	CCDC80	NM_199511	human	genbank	54_36p	-1	validated	missense	c.1966	p.K656Q	1	NULL	-	-	no_errors
POGLUT1	56983	genome.wustl.edu	36	3	120688369	120688369	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	120688369	120688369	G	C	SNP	KTELC1	NM_152305	human	genbank	54_36p	1	validated	splice_site	c.639-1	e7-1	1	-	-	-	no_errors
PARP9	83666	genome.wustl.edu	36	3	123759921	123759921	+	Silent	SNP	G	G	T		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	123759921	123759921	G	T	SNP	PARP9	NM_031458	human	genbank	54_36p	-1	provisional	silent	c.99	p.I33	0.301	NULL	-	-	no_errors
KY	339855	genome.wustl.edu	36	3	135805662	135805662	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	135805662	135805662	G	A	SNP	KY	NM_178554	human	genbank	54_36p	-1	validated	missense	c.1435	p.R479C	1	NULL	-	-	no_errors
MED12L	116931	genome.wustl.edu	36	3	152550663	152550663	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	152550663	152550663	A	G	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	missense	c.2272	p.K758E	1	NULL	-	-	no_errors
EFHB	151651	genome.wustl.edu	36	3	19950031	19950031	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	19950031	19950031	C	T	SNP	EFHB	NM_144715	human	genbank	54_36p	-1	validated	missense	c.484	p.A162T	0.02	NULL	-	-	no_errors
SCN10A	6336	genome.wustl.edu	36	3	38714850	38714850	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	38714850	38714850	G	A	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	missense	c.4865	p.S1622F	1	NULL	-	-	no_errors
CCR8	1237	genome.wustl.edu	36	3	39349522	39349522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	39349522	39349522	C	G	SNP	CCR8	NM_005201	human	genbank	54_36p	1	reviewed	missense	c.696	p.N232K	0.96	NULL	-	-	no_errors
ZNF197	10168	genome.wustl.edu	36	3	44645733	44645733	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	44645733	44645733	C	A	SNP	ZNF197	NM_006991	human	genbank	54_36p	1	reviewed	missense	c.83	p.T28N	0.04	NULL	-	-	no_errors
LRRC2	79442	genome.wustl.edu	36	3	46538078	46538078	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	46538078	46538078	C	T	SNP	LRRC2	NM_024512	human	genbank	54_36p	-1	validated	missense	c.1004	p.R335Q	0.51	NULL	HMMPfam_LRR_1;superfamily_L domain-like	-	no_errors
DHX30	22907	genome.wustl.edu	36	3	47863811	47863811	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	47863811	47863811	G	A	SNP	DHX30	NM_138615	human	genbank	54_36p	1	reviewed	silent	c.1974	p.L658	0.99	NULL	-	-	no_errors
CACNA1D	776	genome.wustl.edu	36	3	53733046	53733046	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	53733046	53733046	G	A	SNP	CACNA1D	NM_000720	human	genbank	54_36p	1	validated	missense	c.2140	p.A714T	1	NULL	-	-	no_errors
THOC7	80145	genome.wustl.edu	36	3	63795871	63795871	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	63795871	63795871	T	A	SNP	THOC7	NM_025075	human	genbank	54_36p	-1	validated	missense	c.546	p.E182D	1	NULL	-	-	no_errors
GRM7	2917	genome.wustl.edu	36	3	6878441	6878441	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	6878441	6878441	C	A	SNP	GRM7	NM_181874	human	genbank	54_36p	1	reviewed	missense	c.366	p.F122L	1	HMMPfam_ANF_receptor	HMMPfam_7tm_3;HMMPfam_ANF_receptor;HMMPfam_NCD3G;superfamily_Periplasmic binding protein-like I;superfamily_TNF receptor-like	-	no_errors
EPHA6	285220	genome.wustl.edu	36	3	98188911	98188911	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	3	98188911	98188911	A	G	SNP	EPHA6	NM_001080448	human	genbank	54_36p	1	provisional	silent	c.498	p.T166	0.96	NULL	-	-	no_errors
ZNF518B	85460	genome.wustl.edu	36	4	10053863	10053881	+	Frame_Shift_Del	DEL	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	-	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	10053863	10053881	GTTGCTTCTATCAAATGCC	-	DEL	ZNF518B	NM_053042	human	genbank	54_36p	-1	validated	frame_shift_del	c.3188_3170	p.R1057fs	0.992:0.992:0.828:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.797:0.862	NULL	-	(deletion:cds_exon[10053826;10057050])	no_errors
NFKB1	4790	genome.wustl.edu	36	4	103678093	103678093	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	103678093	103678093	A	G	SNP	NFKB1	NM_003998	human	genbank	54_36p	1	reviewed	silent	c.210	p.L70	0.99	HMMPfam_RHD	HMMPfam_Death;HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_TIG;superfamily_p53-like transcription factors;superfamily_DEATH domain;HMMPfam_RHD;superfamily_E set domains	-	no_errors
OTUD4	54726	genome.wustl.edu	36	4	146278262	146278262	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	146278262	146278262	A	C	SNP	OTUD4	NM_001102653	human	genbank	54_36p	-1	reviewed	missense	c.2920	p.S974A	1	NULL	-	-	no_errors
NAF1	92345	genome.wustl.edu	36	4	164269865	164269865	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	164269865	164269865	G	C	SNP	NAF1	NM_138386	human	genbank	54_36p	-1	validated	missense	c.1119	p.F373L	0.39	NULL	-	-	no_errors
IRF2	3660	genome.wustl.edu	36	4	185577632	185577632	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	185577632	185577632	A	G	SNP	IRF2	NM_002199	human	genbank	54_36p	-1	reviewed	missense	c.172	p.W58R	1	NULL	-	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187747329	187747329	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	187747329	187747329	G	T	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.13178	p.P4393H	1	NULL	-	-	no_errors
PHOX2B	8929	genome.wustl.edu	36	4	41445365	41445365	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	41445365	41445365	G	T	SNP	PHOX2B	NM_003924	human	genbank	54_36p	-1	reviewed	missense	c.20	p.S7Y	1	NULL	Homeobox;HMMPfam_Homeobox	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79514397	79514397	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	4	79514397	79514397	A	T	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	1	known	missense	c.3119	p.Y1040F	0.99	NULL	-	-	no_errors
LVRN	206338	genome.wustl.edu	36	5	115326342	115326342	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	5	115326342	115326342	C	T	SNP	LVRN	NM_173800	human	genbank	54_36p	1	validated	silent	c.129	p.V43	0.03	NULL	-	-	no_errors
GFRA3	2676	genome.wustl.edu	36	5	137621427	137621427	+	Silent	SNP	G	G	C		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	5	137621427	137621427	G	C	SNP	GFRA3	NM_001496	human	genbank	54_36p	-1	reviewed	silent	c.585	p.V195	0.004	NULL	-	-	no_errors
EGR1	1958	genome.wustl.edu	36	5	137830996	137830996	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	5	137830996	137830996	G	A	SNP	EGR1	NM_001964	human	genbank	54_36p	1	reviewed	missense	c.959	p.R320H	1	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SLC6A3	6531	genome.wustl.edu	36	5	1462901	1462901	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	5	1462901	1462901	G	C	SNP	SLC6A3	NM_001044	human	genbank	54_36p	-1	validated	missense	c.1333	p.R445G	1	HMMPfam_SNF	HMMPfam_SNF	-	no_errors
RUFY1	80230	genome.wustl.edu	36	5	178949231	178949231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	5	178949231	178949231	G	C	SNP	RUFY1	NM_025158	human	genbank	54_36p	1	validated	missense	c.1105	p.E369Q	0.987	NULL	-	-	no_errors
PREP	5550	genome.wustl.edu	36	6	105878338	105878338	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	105878338	105878338	T	G	SNP	PREP	NM_002726	human	genbank	54_36p	-1	reviewed	splice_site	c.1214-2	e10-2	1	-	-	-	no_errors
RPF2	84154	genome.wustl.edu	36	6	111436015	111436023	+	In_Frame_Del	DEL	CTAAAAAGT	CTAAAAAGT	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	CTAAAAAGT	CTAAAAAGT	CTAAAAAGT	-	CTAAAAAGT	CTAAAAAGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	111436015	111436023	CTAAAAAGT	-	DEL	BXDC1	NM_032194	human	genbank	54_36p	1	validated	in_frame_del	c.475_483	p.KSL160in_frame_del	0.968:0.981:0.966:1.000:1.000:1.000:1.000:1.000:1.000	NULL	-	(deletion:cds_exon[111435934;111436033])	no_errors
HERV-FRD	405754	genome.wustl.edu	36	6	11213309	11213309	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	11213309	11213309	A	C	SNP	HERV-FRD	NM_207582	human	genbank	54_36p	-1	provisional	missense	c.221	p.I74S		NULL	-	-	no_errors
C6orf170	221322	genome.wustl.edu	36	6	121443618	121443618	+	Nonstop_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	121443618	121443618	A	T	SNP	C6orf170	NM_152730	human	genbank	54_36p	-1	validated	nonstop	c.3772	p.*1258K	0.94	NULL	-	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	52025839	52025839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	52025839	52025839	C	G	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.2134	p.V712L	0.71	NULL	HMMPfam_TIG;superfamily_Pectin lyase-like;superfamily_E set domains;superfamily_Anthrax protective antigen	-	no_errors
COL21A1	81578	genome.wustl.edu	36	6	56152449	56152449	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	56152449	56152449	C	T	SNP	COL21A1	NM_030820	human	genbank	54_36p	-1	reviewed	missense	c.526	p.D176N	1	NULL	-	-	no_errors
LOC727842	727842	genome.wustl.edu	36	6	58554168	58554168	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	58554168	58554168	G	C	SNP	LOC727842	XR_015140	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RREB1	6239	genome.wustl.edu	36	6	7176750	7176750	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	7176750	7176750	C	T	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	missense	c.3419	p.S1140F	0.846	NULL	HMMPfam_zf-C2H2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CAGE1	285782	genome.wustl.edu	36	6	7318748	7318748	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	7318748	7318748	C	A	SNP	CAGE1	NM_205864	human	genbank	54_36p	-1	validated	missense	c.895	p.V299L		NULL	-	-	no_errors
KCNQ5	56479	genome.wustl.edu	36	6	73877773	73877773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	73877773	73877773	G	C	SNP	KCNQ5	NM_019842	human	genbank	54_36p	1	reviewed	missense	c.1051	p.A351P	1	NULL	HMMPfam_Ion_trans;HMMPfam_KCNQ_channel;superfamily_Voltage-gated potassium channels	-	no_errors
MTO1	25821	genome.wustl.edu	36	6	74240007	74240007	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	74240007	74240007	A	G	SNP	MTO1	NM_133645	human	genbank	54_36p	1	reviewed	missense	c.734	p.K245R	1	NULL	-	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75900411	75900411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	75900411	75900411	G	C	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	missense	c.5547	p.N1849K	1	NULL	-	-	no_errors
SNAP91	9892	genome.wustl.edu	36	6	84327316	84327316	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	6	84327316	84327316	C	A	SNP	SNAP91	NM_014841	human	genbank	54_36p	-1	validated	missense	c.2512	p.A838S	0.97	NULL	HMMPfam_ANTH;superfamily_ENTH/VHS domain;superfamily_GAT-like domain	-	no_errors
ENSG00000180909	0	genome.wustl.edu	36	11	6130098	6130098	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	11	6130098	6130098	G	A	SNP	ENSG00000180909	ENST00000316506	human	ensembl	54_36p	-1	known	silent	c.297	p.H99	0.005	NULL	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
LOC100132437	100132437	genome.wustl.edu	36	9	68357723	68357723	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	9	68357723	68357723	A	G	SNP	LOC100132437	XM_001720808	human	genbank	54_36p	1	model	missense	c.193	p.M65V	1	NULL	-	-	no_errors
GNB2	2783	genome.wustl.edu	36	7	100113090	100113090	+	Missense_Mutation	SNP	A	A	G		Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	100113090	100113090	A	G	SNP	GNB2	NM_005273	human	genbank	54_36p	1	reviewed	missense	c.301	p.M101V	1	HMMPfam_WD40	HMMPfam_WD40,superfamily_WD40 repeat-like	-	no_errors
TSGA13	114960	genome.wustl.edu	36	7	130019032	130019032	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	130019032	130019032	T	G	SNP	TSGA13	NM_052933	human	genbank	54_36p	-1	provisional	silent	c.42	p.S14	0.02	NULL	-	-	no_errors
UBN2	254048	genome.wustl.edu	36	7	138596723	138596724	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	138596723	138596724	CA	-	DEL	UBN2	NM_173569	human	genbank	54_36p	1	validated	frame_shift_del	c.842_843	p.L282fs	0.000:0.000	NULL	-	(deletion:cds_exon[138596538;138597027])	no_errors
LOC441294	441294	genome.wustl.edu	36	7	142980478	142980478	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	142980478	142980478	A	C	SNP	LOC441294	NM_001008747	human	genbank	54_36p	1	predicted	missense	c.1446	p.E482D	1	NULL	-	-	no_errors
CTAGE4	100128553	genome.wustl.edu	36	7	143512235	143512235	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	143512235	143512235	G	C	SNP	CTAGE4	XR_038147	human	genbank	54_36p	1	model	rna	NULL	NULL	0.44	-	-	-	no_errors
GIMAP6	474344	genome.wustl.edu	36	7	149955985	149955985	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	149955985	149955985	G	T	SNP	GIMAP6	NM_024711	human	genbank	54_36p	-1	reviewed	missense	c.634	p.L212M	0.79	NULL	-	-	no_errors
CBX3	11335	genome.wustl.edu	36	7	26209145	26209145	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	26209145	26209145	T	G	SNP	CBX3	NM_007276	human	genbank	54_36p	1	reviewed	missense	c.2	p.M1R	1	NULL	-	-	no_errors
HECW1	23072	genome.wustl.edu	36	7	43499238	43499238	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	43499238	43499238	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	missense	c.3371	p.R1124H	1	NULL	HMMPfam_C2;HMMPfam_HECT;HMMPfam_WW;superfamily_WW domain;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Hect E3 ligase catalytic domain	-	no_errors
NPC1L1	29881	genome.wustl.edu	36	7	44522980	44522980	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	44522980	44522980	G	A	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	silent	c.3447	p.P1149	1	NULL	-	-	no_errors
KRIT1	889	genome.wustl.edu	36	7	91681222	91681222	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	7	91681222	91681222	T	C	SNP	KRIT1	NM_004912	human	genbank	54_36p	-1	validated	missense	c.1738	p.N580D	1	NULL	HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_Second domain of FERM	-	no_errors
MAL2	114569	genome.wustl.edu	36	8	120321660	120321660	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	8	120321660	120321660	G	C	SNP	MAL2	NM_052886	human	genbank	54_36p	1	reviewed	missense	c.379	p.A127P	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PLEC	5339	genome.wustl.edu	36	8	145066072	145066072	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	8	145066072	145066072	C	A	SNP	PLEC1	NM_201380	human	genbank	54_36p	-1	reviewed	missense	c.10316	p.R3439M	0.08	NULL	HMMPfam_Plectin;HMMPfam_CH;HMMPfam_S10_plectin;superfamily_Spectrin repeat;superfamily_Calponin-homology domain CH-domain;superfamily_Plakin repeat	-	no_errors
C8orf80	389643	genome.wustl.edu	36	8	27943808	27943808	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	8	27943808	27943808	T	A	SNP	C8orf80	NM_001010906	human	genbank	54_36p	-1	predicted	missense	c.1955	p.K652M	1	NULL	-	-	no_errors
WRN	7486	genome.wustl.edu	36	8	31068951	31068951	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	8	31068951	31068951	T	G	SNP	WRN	NM_000553	human	genbank	54_36p	1	reviewed	missense	c.1893	p.I631M	0.59	HMMPfam_DEAD	HMMPfam_Helicase_C;HMMPfam_HRDC;HMMPfam_3_5_exonuc;superfamily_HRDC-like;HMMPfam_DEAD;superfamily_Ribonuclease H-like;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IGKV1-5	28299	genome.wustl.edu	36	2	89302534	89302534	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	2	89302534	89302534	G	T	SNP	IGKV1-5	ENST00000390259	human	ensembl	54_36p	-1	known	silent	c.120	p.S40	0.78	NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
ZNF189	7743	genome.wustl.edu	36	9	103210792	103210792	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	9	103210792	103210792	A	G	SNP	ZNF189	NM_003452	human	genbank	54_36p	1	validated	silent	c.921	p.Q307	1	HMMPfam_zf-C2H2	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PALM2	114299	genome.wustl.edu	36	9	111745233	111745233	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	9	111745233	111745233	A	G	SNP	PALM2	NM_053016	human	genbank	54_36p	1	validated	missense	c.949	p.M317V	1	NULL	-	-	no_errors
GAPVD1	26130	genome.wustl.edu	36	9	127123549	127123549	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	9	127123549	127123549	T	G	SNP	GAPVD1	NM_015635	human	genbank	54_36p	1	validated	missense	c.1619	p.L540R	1	NULL	HMMPfam_RasGAP;HMMPfam_VPS9;superfamily_GTPase activation domain GAP;superfamily_VPS9 domain (Pfam 02204)	-	no_errors
RALGDS	5900	genome.wustl.edu	36	9	134975699	134975699	+	Splice_Site	SNP	T	C	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	9	134975699	134975699	T	C	SNP	RALGDS	NM_006266	human	genbank	54_36p	-1	validated	splice_site	c.295-2	e3-2	0.99	-	-	-	no_errors
BHLHB9	80823	genome.wustl.edu	36	X	101891283	101891283	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	X	101891283	101891283	C	G	SNP	BHLHB9	NM_030639	human	genbank	54_36p	1	validated	missense	c.704	p.S235C	0.97	NULL	-	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106656544	106656544	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	X	106656544	106656544	G	A	SNP	FRMPD3	XM_042978	human	genbank	54_36p	1	model	missense	c.169	p.V57I	1	NULL	-	-	no_errors
COL4A5	1287	genome.wustl.edu	36	X	107826227	107826227	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	X	107826227	107826227	G	A	SNP	COL4A5	NM_033380	human	genbank	54_36p	1	reviewed	missense	c.5039	p.R1680Q	1	NULL	-	-	no_errors
FAM50A	9130	genome.wustl.edu	36	X	153328092	153328092	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	X	153328092	153328092	G	A	SNP	FAM50A	NM_004699	human	genbank	54_36p	1	provisional	missense	c.432	p.M144I	1	NULL	-	-	no_errors
DMD	1756	genome.wustl.edu	36	X	32290831	32290831	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	X	32290831	32290831	C	A	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	nonsense	c.5320	p.G1774*	1	HMMPfam_Spectrin	HMMPfam_ZZ;HMMPfam_WW;superfamily_WW domain;HMMPfam_CH;HMMPfam_Spectrin;superfamily_Prefoldin;superfamily_t-snare proteins;HMMPfam_efhand_1;HMMPfam_efhand_2;superfamily_Spectrin repeat;superfamily_EF-hand;superfamily_Calponin-homology domain CH-domain	-	no_errors
MED12	9968	genome.wustl.edu	36	X	70269528	70269528	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	X	70269528	70269528	C	G	SNP	MED12	NM_005120	human	genbank	54_36p	1	validated	missense	c.4524	p.H1508Q	1	NULL	-	-	no_errors
MAGEE2	139599	genome.wustl.edu	36	X	74920217	74920228	+	In_Frame_Del	DEL	AAGCTCATATTC	AAGCTCATATTC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	AAGCTCATATTC	AAGCTCATATTC	AAGCTCATATTC	-	AAGCTCATATTC	AAGCTCATATTC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	ec98ed86-1d2f-4e54-b2d4-5976469bf0b8	c21a3215-750d-4186-8c67-1f5d2bdc32fa	X	74920217	74920228	AAGCTCATATTC	-	DEL	MAGEE2	NM_138703	human	genbank	54_36p	-1	validated	in_frame_del	c.1395_1384	p.EYEL462in_frame_del	0.994:0.996:0.999:1.000:1.000:0.999:0.998:0.999:0.998:0.998:0.998:0.997	NULL	-	(deletion:cds_exon[74920040;74921611])	no_errors
