Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
CSDE1	7812	genome.wustl.edu	36	1	115083932	115083932	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	1	115083932	115083932	T	G	SNP	CSDE1	NM_001007553	human	genbank	54_36p	-1	validated	missense	c.103	p.T35P	1	NULL	-	-	no_errors
PRPF3	9129	genome.wustl.edu	36	1	148574237	148574237	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	1	148574237	148574237	C	A	SNP	PRPF3	NM_004698	human	genbank	54_36p	1	reviewed	missense	c.936	p.D312E	1	NULL	-	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155764297	155764297	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	1	155764297	155764297	C	T	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	missense	c.1694	p.R565H	0.75	NULL	HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156873163	156873163	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	1	156873163	156873163	T	C	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.5202	p.I1734M	0.32	NULL	-	-	no_errors
NBPF3	84224	genome.wustl.edu	36	1	21670841	21670841	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	1	21670841	21670841	C	G	SNP	NBPF3	NM_032264	human	genbank	54_36p	1	validated	missense	c.639	p.H213Q		NULL	-	-	no_errors
OR4F5	79501	genome.wustl.edu	36	1	59401	59401	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	1	59401	59401	G	A	SNP	OR4F5	NM_001005484	human	genbank	54_36p	1	provisional	missense	c.448	p.V150M		NULL	-	-	no_errors
PNLIP	5406	genome.wustl.edu	36	10	118308707	118308707	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	10	118308707	118308707	G	A	SNP	PNLIP	NM_000936	human	genbank	54_36p	1	reviewed	missense	c.982	p.A328T	1	HMMPfam_Lipase	HMMPfam_PLAT;HMMPfam_Lipase;superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain);superfamily_alpha/beta-Hydrolases	-	no_errors
LOC387646	387646	genome.wustl.edu	36	10	27579509	27579509	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	10	27579509	27579509	G	A	SNP	LOC387646	NR_003525	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.002	-	-	-	pseudogene
ANKRD30A	91074	genome.wustl.edu	36	10	37526222	37526222	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	10	37526222	37526222	C	T	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	silent	c.2454	p.P818	0.02	NULL	HMMPfam_Ank;superfamily_Ankyrin repeat	-	no_errors
RNLS	55328	genome.wustl.edu	36	10	90112411	90112411	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	10	90112411	90112411	C	G	SNP	C10orf59	NM_001031709	human	genbank	54_36p	-1	provisional	missense	c.578	p.R193P	1	NULL	HMMPfam_FAD_binding_3;superfamily_FAD/NAD(P)-binding domain	-	no_errors
ENTPD1	953	genome.wustl.edu	36	10	97589521	97589521	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	10	97589521	97589521	C	T	SNP	ENTPD1	NM_001098175	human	genbank	54_36p	1	validated	silent	c.249	p.G83	1	NULL	-	-	no_errors
POLD3	10714	genome.wustl.edu	36	11	74024916	74024916	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	11	74024916	74024916	A	C	SNP	POLD3	NM_006591	human	genbank	54_36p	1	validated	missense	c.1146	p.K382N	1	NULL	-	-	no_errors
GRIN2B	2904	genome.wustl.edu	36	12	13659413	13659413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	12	13659413	13659413	C	T	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	missense	c.1556	p.R519Q	1	NULL	HMMPfam_Lig_chan;superfamily_Periplasmic binding protein-like I;superfamily_Periplasmic binding protein-like II;superfamily_Voltage-gated potassium channels	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26876940	26876940	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	12	26876940	26876940	G	C	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.42	p.I14M	1	NULL	-	-	no_errors
KRT1	3848	genome.wustl.edu	36	12	51358657	51358657	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	12	51358657	51358657	C	T	SNP	KRT1	NM_006121	human	genbank	54_36p	-1	reviewed	missense	c.742	p.D248N	0.52	HMMPfam_Filament	HMMPfam_Filament;superfamily_Prefoldin	-	no_errors
LOC400061	400061	genome.wustl.edu	36	12	93439105	93439105	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	12	93439105	93439105	G	A	SNP	LOC400061	XR_016608	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MYO16	23026	genome.wustl.edu	36	13	108575501	108575501	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	13	108575501	108575501	A	G	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	silent	c.3510	p.R1170	1	NULL	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LCP1	3936	genome.wustl.edu	36	13	45614517	45614517	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	13	45614517	45614517	C	T	SNP	LCP1	NM_002298	human	genbank	54_36p	-1	reviewed	silent	c.1413	p.A471	1	HMMPfam_CH	HMMPfam_CH;HMMPfam_efhand;superfamily_EF-hand;superfamily_Calponin-homology domain CH-domain	-	no_errors
NYNRIN	57523	genome.wustl.edu	36	14	23947546	23947546	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	14	23947546	23947546	C	T	SNP	KIAA1305	NM_025081	human	genbank	54_36p	1	validated	missense	c.830	p.P277L	0.47	NULL	-	-	no_errors
PRTG	283659	genome.wustl.edu	36	15	53820119	53820119	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	15	53820119	53820119	G	A	SNP	PRTG	NM_173814	human	genbank	54_36p	-1	validated	silent	c.150	p.V50	1	NULL	-	-	no_errors
WHAMM	123720	genome.wustl.edu	36	15	81296867	81296867	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	15	81296867	81296867	G	T	SNP	WHAMM	NM_001080435	human	genbank	54_36p	1	provisional	nonsense	c.2104	p.E702*		NULL	-	-	no_errors
WHAMM	123720	genome.wustl.edu	36	15	81299246	81299246	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	15	81299246	81299246	G	A	SNP	WHAMM	NM_001080435	human	genbank	54_36p	1	provisional	silent	c.2334	p.E778	1	NULL	-	-	no_errors
SLC7A6OS	84138	genome.wustl.edu	36	16	66895521	66895521	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	16	66895521	66895521	T	C	SNP	SLC7A6OS	NM_032178	human	genbank	54_36p	-1	provisional	missense	c.587	p.Y196C	1	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519015	7519015	+	Splice_Site	SNP	C	G	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	17	7519015	7519015	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.560-1	e5-1	0.38	-	-	-	no_errors
MYH10	4628	genome.wustl.edu	36	17	8337021	8337021	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	17	8337021	8337021	T	C	SNP	MYH10	NM_005964	human	genbank	54_36p	-1	validated	missense	c.4163	p.E1388G	1	HMMPfam_Myosin_tail_1	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Myosin S1 fragment N-terminal domain;superfamily_Prefoldin;superfamily_UBA-like;superfamily_HR1 repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANKRD30B	374860	genome.wustl.edu	36	18	14772535	14772535	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	18	14772535	14772535	G	T	SNP	ANKRD30B	ENST00000358984	human	ensembl	54_36p	1	known	nonsense	c.1492	p.E498*		NULL	-	-	no_errors
DSC1	1823	genome.wustl.edu	36	18	26968696	26968696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	18	26968696	26968696	G	T	SNP	DSC1	NM_024421	human	genbank	54_36p	-1	reviewed	missense	c.1713	p.N571K	0.88	NULL	HMMPfam_Cadherin;HMMPfam_Cadherin_pro;superfamily_Cadherin-like	-	no_errors
RTN2	6253	genome.wustl.edu	36	19	50684493	50684493	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	19	50684493	50684493	G	A	SNP	RTN2	NM_005619	human	genbank	54_36p	-1	reviewed	missense	c.1192	p.R398C	1	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
OR7G3	390883	genome.wustl.edu	36	19	9098569	9098569	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	19	9098569	9098569	C	A	SNP	OR7G3	NM_001001958	human	genbank	54_36p	-1	provisional	missense	c.58	p.D20Y		NULL	-	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179105686	179105686	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	2	179105686	179105686	T	C	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.96197	p.Q32066R	0.99	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
COL3A1	1281	genome.wustl.edu	36	2	189581976	189581976	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	2	189581976	189581976	G	A	SNP	COL3A1	NM_000090	human	genbank	54_36p	1	reviewed	missense	c.3607	p.A1203T	0.29	NULL	COLFI;HMMPfam_COLFI;VWC;HMMPfam_VWC;Collagen;HMMPfam_Collagen;Fibrinogen C-terminal domain-like;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
CYP1B1	1545	genome.wustl.edu	36	2	38151642	38151642	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	2	38151642	38151642	G	C	SNP	CYP1B1	NM_000104	human	genbank	54_36p	-1	reviewed	missense	c.1359	p.N453K	1	HMMPfam_p450	HMMPfam_p450;superfamily_Cytochrome P450	-	no_errors
BTBD3	22903	genome.wustl.edu	36	20	11852279	11852279	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	20	11852279	11852279	G	A	SNP	BTBD3	NM_014962	human	genbank	54_36p	1	validated	missense	c.1534	p.G512R	1	NULL	-	-	no_errors
PHACTR3	116154	genome.wustl.edu	36	20	57751719	57751719	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	20	57751719	57751719	G	A	SNP	PHACTR3	NM_080672	human	genbank	54_36p	1	reviewed	splice_site	c.280+1	e2+1	1	-	-	-	no_errors
SON	6651	genome.wustl.edu	36	21	33848290	33848290	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	21	33848290	33848290	T	A	SNP	SON	NM_138927	human	genbank	54_36p	1	reviewed	missense	c.4883	p.V1628D	1	NULL	HMMPfam_G-patch;HMMPfam_dsrm;superfamily_WD40 repeat-like;superfamily_dsRNA-binding domain-like	-	no_errors
OR5H2	79310	genome.wustl.edu	36	3	99484630	99484630	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	3	99484630	99484630	G	T	SNP	OR5H2	NM_001005482	human	genbank	54_36p	1	provisional	missense	c.209	p.S70I		NULL	-	-	no_errors
SPRY1	10252	genome.wustl.edu	36	4	124542801	124542801	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	4	124542801	124542801	T	C	SNP	SPRY1	NM_005841	human	genbank	54_36p	1	validated	missense	c.605	p.L202S	0.96	NULL	-	-	no_errors
CLCN3	1182	genome.wustl.edu	36	4	170871004	170871004	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	4	170871004	170871004	C	G	SNP	CLCN3	NM_173872	human	genbank	54_36p	1	validated	missense	c.2349	p.C783W	1	HMMPfam_CBS	HMMPfam_CBS;HMMPfam_Voltage_CLC;superfamily_CBS-domain;superfamily_Clc chloride channel	-	no_errors
GABRA2	2555	genome.wustl.edu	36	4	45947281	45947281	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	4	45947281	45947281	G	C	SNP	GABRA2	NM_000807	human	genbank	54_36p	-1	reviewed	missense	c.1157	p.T386S	1	HMMPfam_Neur_chan_memb	HMMPfam_Neur_chan_memb;HMMPfam_Neur_chan_LBD;superfamily_Nicotinic receptor ligand binding domain-like;superfamily_Neurotransmitter-gated ion-channel transmembrane pore	-	no_errors
UGT2B10	7365	genome.wustl.edu	36	4	69727856	69727856	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	4	69727856	69727856	G	C	SNP	UGT2B10	NM_001075	human	genbank	54_36p	1	validated	splice_site	c.1307+1	e5+1	1	-	-	-	no_errors
PCDHA9	9752	genome.wustl.edu	36	5	140208366	140208366	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	5	140208366	140208366	C	T	SNP	PCDHA9	NM_031857	human	genbank	54_36p	1	reviewed	silent	c.102	p.S34	0.22	NULL	-	-	no_errors
PCDHGA12	26025	genome.wustl.edu	36	5	140790893	140790893	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	5	140790893	140790893	A	G	SNP	PCDHGA12	NM_003735	human	genbank	54_36p	1	reviewed	missense	c.383	p.D128G	1	NULL	-	-	no_errors
HTR1A	3350	genome.wustl.edu	36	5	63292623	63292623	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	5	63292623	63292623	C	T	SNP	HTR1A	NM_000524	human	genbank	54_36p	-1	validated	missense	c.680	p.R227H	1	NULL	-	-	no_errors
ROS1	6098	genome.wustl.edu	36	6	117738055	117738055	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	6	117738055	117738055	C	T	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	missense	c.6316	p.A2106T	0.96	HMMPfam_Pkinase_Tyr	Pkinase_Tyr;HMMPfam_Pkinase_Tyr;fn3;HMMPfam_fn3;Fibronectin type III;superfamily_Fibronectin type III;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);YWTD domain;superfamily_YWTD domain	-	no_errors
OR5V1	81696	genome.wustl.edu	36	6	29431442	29431442	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	6	29431442	29431442	G	A	SNP	OR5V1	NM_030876	human	genbank	54_36p	-1	validated	silent	c.510	p.G170		NULL	-	-	no_errors
AKR1B1	231	genome.wustl.edu	36	7	133782646	133782646	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	7	133782646	133782646	T	C	SNP	AKR1B1	NM_001628	human	genbank	54_36p	-1	reviewed	missense	c.769	p.N257D	1	HMMPfam_Aldo_ket_red	HMMPfam_Aldo_ket_red;superfamily_NAD(P)-linked oxidoreductase	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151482139	151482139	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	7	151482139	151482139	G	A	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	silent	c.12165	p.I4055	1	NULL	AT_hook;HMMPfam_AT_hook;HMG_box;HMMPfam_HMG_box;SET;HMMPfam_SET;PHD;HMMPfam_PHD;FYRN;HMMPfam_FYRN;FYRC;HMMPfam_FYRC	-	no_errors
C8orf45	157777	genome.wustl.edu	36	8	67952151	67952151	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	8	67952151	67952151	T	G	SNP	C8orf45	NM_173518	human	genbank	54_36p	1	validated	missense	c.284	p.L95R	1	NULL	-	-	no_errors
DAB2IP	153090	genome.wustl.edu	36	9	123561076	123561076	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	9	123561076	123561076	C	T	SNP	DAB2IP	NM_032552	human	genbank	54_36p	1	validated	nonsense	c.511	p.R171*	1	NULL	-	-	no_errors
ZFX	7543	genome.wustl.edu	36	X	24136297	24136297	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	af0edbf4-9d90-4373-a9ce-0875ebbe1d04	3cd33d1c-0b1d-4346-840e-ba14b49f52e7	X	24136297	24136297	G	A	SNP	ZFX	NM_003410	human	genbank	54_36p	1	validated	missense	c.982	p.V328I	0.994	NULL	-	-	no_errors
