Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
STXBP3	6814	genome.wustl.edu	36	1	109123502	109123502	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	109123502	109123502	G	C	SNP	STXBP3	NM_007269	human	genbank	54_36p	1	validated	silent	c.756	p.L252	1	NULL	-	-	no_errors
UBL4B	164153	genome.wustl.edu	36	1	110456870	110456870	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	110456870	110456870	A	G	SNP	UBL4B	NM_203412	human	genbank	54_36p	1	validated	missense	c.191	p.N64S	0.96	NULL	-	-	no_errors
KCNA2	3737	genome.wustl.edu	36	1	110948093	110948093	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	110948093	110948093	C	G	SNP	KCNA2	NM_004974	human	genbank	54_36p	-1	reviewed	missense	c.835	p.E279Q	1	HMMPfam_Ion_trans	HMMPfam_K_tetra;HMMPfam_Ion_trans;superfamily_POZ domain;superfamily_Voltage-gated potassium channels	-	no_errors
CHD1L	9557	genome.wustl.edu	36	1	145233735	145233735	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	145233735	145233735	G	A	SNP	CHD1L	NM_004284	human	genbank	54_36p	1	validated	splice_site	c.2616-1	e23-1	1	-	-	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174931581	174931581	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	174931581	174931581	T	G	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.2709	p.C903W	1	NULL	-	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178328483	178328483	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	178328483	178328483	C	G	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	missense	c.6617	p.P2206R	0.97	NULL	-	-	no_errors
KIF21B	23046	genome.wustl.edu	36	1	199225768	199225768	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	199225768	199225768	G	C	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	silent	c.3057	p.S1019	0.43	NULL	HMMPfam_WD40;HMMPfam_Kinesin;superfamily_Prefoldin;superfamily_WD40 repeat-like;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ITPKB	3707	genome.wustl.edu	36	1	224896358	224896358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	224896358	224896358	C	T	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	missense	c.2338	p.A780T	1	HMMPfam_IPK	HMMPfam_IPK;superfamily_SAICAR synthase-like	-	no_errors
TARBP1	6894	genome.wustl.edu	36	1	232620564	232620564	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	232620564	232620564	A	G	SNP	TARBP1	NM_005646	human	genbank	54_36p	-1	reviewed	silent	c.3594	p.A1198	1	NULL	-	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245087640	245087640	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	245087640	245087640	A	T	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.4232	p.L1411H	0.08	NULL	-	-	no_errors
SLC9A1	6548	genome.wustl.edu	36	1	27300285	27300285	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	27300285	27300285	G	A	SNP	SLC9A1	NM_003047	human	genbank	54_36p	-1	validated	silent	c.2106	p.G702	1	NULL	-	-	no_errors
ARHGEF16	27237	genome.wustl.edu	36	1	3379574	3379574	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	3379574	3379574	G	A	SNP	ARHGEF16	NM_014448	human	genbank	54_36p	1	reviewed	silent	c.231	p.E77	0.938	NULL	-	-	no_errors
TM2D1	83941	genome.wustl.edu	36	1	61963351	61963351	+	Silent	SNP	A	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	61963351	61963351	A	C	SNP	TM2D1	NM_032027	human	genbank	54_36p	-1	reviewed	silent	c.30	p.S10		NULL	-	-	no_errors
DOCK7	85440	genome.wustl.edu	36	1	62892020	62892020	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	1	62892020	62892020	C	G	SNP	DOCK7	NM_033407	human	genbank	54_36p	-1	validated	missense	c.353	p.R118T	1	NULL	HMMPfam_Ded_cyto;superfamily_ARM repeat	-	no_errors
SFXN3	81855	genome.wustl.edu	36	10	102786216	102786231	+	Splice_Site	DEL	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	-	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	-	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	10	102786216	102786231	GGCTTTTCCACCCACA	-	DEL	SFXN3	NM_030971	human	genbank	54_36p	1	validated	splice_site_del	c.NULL	e5-2	0.195:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.066:0.543:0.964:0.983:0.997:1.000	-	-	(deletion:intron[102785849;102786232])	no_errors
BTRC	8945	genome.wustl.edu	36	10	103211767	103211767	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	10	103211767	103211767	C	T	SNP	BTRC	NM_033637	human	genbank	54_36p	1	reviewed	missense	c.196	p.P66S	1	NULL	HMMPfam_WD40;HMMPfam_F-box;superfamily_WD40 repeat-like;superfamily_F-box domain	-	no_errors
MGEA5	10724	genome.wustl.edu	36	10	103536257	103536257	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	10	103536257	103536257	C	A	SNP	MGEA5	NM_012215	human	genbank	54_36p	-1	validated	nonsense	c.2692	p.E898*	1	NULL	-	-	no_errors
MYST4	23522	genome.wustl.edu	36	10	76458706	76458706	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	10	76458706	76458706	A	G	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	missense	c.4118	p.E1373G	1	NULL	"PHD;HMMPfam_PHD;MOZ_SAS;HMMPfam_MOZ_SAS;FYVE/PHD zinc finger;superfamily_FYVE/PHD zinc finger;""Winged helix"" DNA-binding domain;superfamily_""Winged helix"" DNA-binding domain;Acyl-CoA N-acyltransferases (Nat);superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120896761	120896761	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	11	120896761	120896761	A	G	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	missense	c.1397	p.N466S	1	NULL	HMMPfam_Ldl_recept_b;HMMPfam_Ldl_recept_a;HMMPfam_BNR;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase;superfamily_EGF/Laminin;superfamily_LDL receptor-like module;superfamily_YWTD domain	-	no_errors
CCKBR	887	genome.wustl.edu	36	11	6248984	6248984	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	11	6248984	6248984	G	C	SNP	CCKBR	NM_176875	human	genbank	54_36p	1	reviewed	missense	c.979	p.A327P	1	HMMPfam_7tm_1	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76591795	76591795	+	Missense_Mutation	SNP	G	G	C		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	11	76591795	76591795	G	C	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	missense	c.5097	p.K1699N	0.996	NULL	-	-	no_errors
STK33	65975	genome.wustl.edu	36	11	8442866	8442866	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	11	8442866	8442866	G	A	SNP	STK33	NM_030906	human	genbank	54_36p	-1	validated	missense	c.419	p.T140M	0.75	HMMPfam_Pkinase	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
C12orf42	374470	genome.wustl.edu	36	12	102220460	102220460	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	102220460	102220460	G	A	SNP	C12orf42	NM_001099336	human	genbank	54_36p	-1	validated	silent	c.639	p.A213		NULL	-	-	no_errors
NAA25	80018	genome.wustl.edu	36	12	111000884	111000884	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	111000884	111000884	C	T	SNP	C12orf30	NM_024953	human	genbank	54_36p	-1	validated	silent	c.522	p.L174	1	NULL	-	-	no_errors
LOC643668	643668	genome.wustl.edu	36	12	18738165	18738165	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	18738165	18738165	G	A	SNP	LOC643668	XR_016986	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CACNA1C	775	genome.wustl.edu	36	12	2658874	2658874	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	2658874	2658874	G	T	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.5095	p.A1699S	0.998	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_EF-hand,superfamily_Voltage-gated potassium channels	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	38012445	38012445	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	38012445	38012445	T	C	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	silent	c.2850	p.K950	0.89	NULL	-	-	no_errors
BIN2	51411	genome.wustl.edu	36	12	49982775	49982775	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	49982775	49982775	C	T	SNP	BIN2	NM_016293	human	genbank	54_36p	-1	validated	missense	c.274	p.E92K	1	HMMPfam_BAR	HMMPfam_BAR	-	no_errors
DGKA	1606	genome.wustl.edu	36	12	54633437	54633437	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	54633437	54633437	A	T	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	missense	c.2100	p.E700D	1	HMMPfam_DAGK_acc	HMMPfam_DAGK_acc;HMMPfam_DAGK_cat;HMMPfam_efhand;HMMPfam_C1_1;superfamily_EF-hand;superfamily_Cysteine-rich domain	-	no_errors
THAP2	83591	genome.wustl.edu	36	12	70344567	70344567	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	12	70344567	70344567	A	G	SNP	THAP2	NM_031435	human	genbank	54_36p	1	provisional	missense	c.11	p.N4S	1	NULL	-	-	no_errors
SLC15A1	6564	genome.wustl.edu	36	13	98158993	98158993	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	13	98158993	98158993	A	G	SNP	SLC15A1	NM_005073	human	genbank	54_36p	-1	validated	missense	c.1097	p.V366A	1	NULL	-	-	no_errors
RAGE	5891	genome.wustl.edu	36	14	101765638	101765638	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	14	101765638	101765638	G	C	SNP	RAGE	NM_014226	human	genbank	54_36p	-1	provisional	missense	c.1091	p.S364C	1	NULL	-	-	no_errors
RNASE11	122651	genome.wustl.edu	36	14	20121957	20121957	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	14	20121957	20121957	T	A	SNP	RNASE11	NM_145250	human	genbank	54_36p	-1	validated	missense	c.517	p.S173C		NULL	superfamily_RNase A-like	-	no_errors
PABPN1	8106	genome.wustl.edu	36	14	22863304	22863304	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	14	22863304	22863304	G	A	SNP	PABPN1	NM_004643	human	genbank	54_36p	1	reviewed	missense	c.847	p.G283S	1	NULL	-	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63750739	63750739	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	14	63750739	63750739	T	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	silent	c.19131	p.S6377	0.04	NULL	-	-	no_errors
CILP	8483	genome.wustl.edu	36	15	63286375	63286375	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	15	63286375	63286375	C	A	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	silent	c.222	p.L74	1	NULL	HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_TSP-1 type 1 repeat	-	no_errors
ABCC1	4363	genome.wustl.edu	36	16	16080820	16080820	+	Missense_Mutation	SNP	G	G	C		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	16	16080820	16080820	G	C	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	missense	c.2099	p.G700A	0.999	HMMPfam_ABC_tran	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	-	no_errors
MYLK3	91807	genome.wustl.edu	36	16	45304156	45304156	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	16	45304156	45304156	G	A	SNP	MYLK3	NM_182493	human	genbank	54_36p	-1	validated	silent	c.2019	p.F673	1	NULL	-	-	no_errors
LOC100131582	100131582	genome.wustl.edu	36	16	644991	644991	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	16	644991	644991	C	T	SNP	LOC100131582	XM_001720183	human	genbank	54_36p	-1	model	missense	c.443	p.S148N	0.004	NULL	-	-	no_errors
FZD2	2535	genome.wustl.edu	36	17	39992127	39992127	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	17	39992127	39992127	G	A	SNP	FZD2	NM_001466	human	genbank	54_36p	1	reviewed	silent	c.1545	p.S515	0.998	HMMPfam_Frizzled	HMMPfam_Fz,HMMPfam_Frizzled,superfamily_Frizzled cysteine-rich domain	-	no_errors
USP6	9098	genome.wustl.edu	36	17	4976318	4976318	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	17	4976318	4976318	A	T	SNP	USP6	ENST00000396805	human	ensembl	54_36p	1	known	missense	c.242	p.D81V	0.9	NULL	-	-	no_errors
PITPNM3	83394	genome.wustl.edu	36	17	6312289	6312289	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	17	6312289	6312289	G	A	SNP	PITPNM3	NM_031220	human	genbank	54_36p	-1	validated	missense	c.1870	p.R624W	1	NULL	-	-	no_errors
SDK2	54549	genome.wustl.edu	36	17	68922422	68922422	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	17	68922422	68922422	C	T	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	missense	c.1477	p.A493T	0.99	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	17	7518937	7518937	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.637	p.R213*	0.38	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
RIOK3	8780	genome.wustl.edu	36	18	19313300	19313300	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	18	19313300	19313300	A	C	SNP	RIOK3	NM_003831	human	genbank	54_36p	1	reviewed	missense	c.1366	p.K456Q	0.3	HMMPfam_RIO1	HMMPfam_RIO1;superfamily_Protein kinase-like (PK-like)	-	no_errors
ZNF521	25925	genome.wustl.edu	36	18	21060155	21060155	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	18	21060155	21060155	A	T	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	silent	c.1725	p.L575	0.96	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
RGL3	57139	genome.wustl.edu	36	19	11387798	11387798	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	19	11387798	11387798	C	T	SNP	RGL3	NM_001035223	human	genbank	54_36p	-1	provisional	nonsense	c.452	p.W151*	1	HMMPfam_RasGEF_N	HMMPfam_RA;HMMPfam_RasGEF_N;HMMPfam_RasGEF;superfamily_Ras GEF;superfamily_Ubiquitin-like	-	no_errors
EMR2	30817	genome.wustl.edu	36	19	14723306	14723306	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	19	14723306	14723306	C	A	SNP	EMR2	NM_013447	human	genbank	54_36p	-1	reviewed	missense	c.1966	p.A656S	0.85	HMMPfam_7tm_2	HMMPfam_GPS;HMMPfam_7tm_2;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_Family A G protein-coupled receptor-like	-	no_errors
IRGC	56269	genome.wustl.edu	36	19	48914940	48914940	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	19	48914940	48914940	C	A	SNP	IRGC	NM_019612	human	genbank	54_36p	1	validated	missense	c.390	p.D130E	0.01	NULL	-	-	no_errors
BCAT2	587	genome.wustl.edu	36	19	54001641	54001641	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	19	54001641	54001641	G	T	SNP	BCAT2	NM_001190	human	genbank	54_36p	-1	validated	missense	c.245	p.P82H	1	HMMPfam_Aminotran_4	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes	-	no_errors
RCN3	57333	genome.wustl.edu	36	19	54729337	54729337	+	Silent	SNP	C	C	T		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	19	54729337	54729337	C	T	SNP	RCN3	NM_020650	human	genbank	54_36p	1	provisional	silent	c.318	p.I106	0.996	NULL	-	-	no_errors
OR7G1	125962	genome.wustl.edu	36	19	9086597	9086597	+	Silent	SNP	G	G	T		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	19	9086597	9086597	G	T	SNP	OR7G1	NM_001005192	human	genbank	54_36p	-1	provisional	silent	c.843	p.V281	0.473	NULL	-	-	no_errors
EPC2	26122	genome.wustl.edu	36	2	149255757	149255757	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	149255757	149255757	G	T	SNP	EPC2	NM_015630	human	genbank	54_36p	1	validated	missense	c.1663	p.A555S	1	HMMPfam_E_Pc_C	HMMPfam_E_Pc_C	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152055155	152055155	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	152055155	152055155	C	T	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.19706	p.G6569E	0.99	NULL	-	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179285426	179285426	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	179285426	179285426	C	G	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.23736	p.Q7912H	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DUSP19	142679	genome.wustl.edu	36	2	183668509	183668509	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	183668509	183668509	T	C	SNP	DUSP19	NM_080876	human	genbank	54_36p	1	validated	missense	c.532	p.S178P	1	HMMPfam_DSPc	HMMPfam_DSPc;superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ZNF804A	91752	genome.wustl.edu	36	2	185508899	185508899	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	185508899	185508899	T	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	silent	c.531	p.T177		NULL	-	-	no_errors
COL5A2	1290	genome.wustl.edu	36	2	189607183	189607183	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	189607183	189607183	C	T	SNP	COL5A2	NM_000393	human	genbank	54_36p	-1	reviewed	missense	c.4358	p.R1453Q	1	NULL	-	-	no_errors
KRT18P19	339781	genome.wustl.edu	36	2	189885098	189885098	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	189885098	189885098	A	T	SNP	KRT18P19	XR_016833	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.98	-	-	-	pseudogene
AOX1	316	genome.wustl.edu	36	2	201182370	201182370	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	201182370	201182370	T	G	SNP	AOX1	NM_001159	human	genbank	54_36p	1	reviewed	missense	c.1141	p.L381V		HMMPfam_FAD_binding_5	HMMPfam_Fer2;superfamily_2Fe-2S ferredoxin-like;HMMPfam_FAD_binding_5;HMMPfam_Fer2_2;superfamily_CO dehydrogenase ISP C-domain like;HMMPfam_CO_deh_flav_C;superfamily_CO dehydrogenase flavoprotein C-terminal domain-like;HMMPfam_Ald_Xan_dh_C2;superfamily_Molybdenum cofactor-binding domain;superfamily_FAD-binding domain;HMMPfam_Ald_Xan_dh_C;superfamily_CO dehydrogenase molybdoprotein N-domain-like	-	no_errors
LOC402116	402116	genome.wustl.edu	36	2	209753507	209753507	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	209753507	209753507	G	C	SNP	LOC402116	XR_017081	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
TUBA4A	7277	genome.wustl.edu	36	2	219824013	219824013	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	219824013	219824013	C	G	SNP	TUBA4A	NM_006000	human	genbank	54_36p	-1	reviewed	missense	c.652	p.D218H	1	HMMPfam_Tubulin	HMMPfam_Tubulin;HMMPfam_Tubulin_C;superfamily_Tubulin nucleotide-binding domain-like;superfamily_Tubulin C-terminal domain-like	-	no_errors
UGT1A10	54575	genome.wustl.edu	36	2	234210018	234210018	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	234210018	234210018	C	G	SNP	UGT1A10	NM_019075	human	genbank	54_36p	1	reviewed	missense	c.111	p.H37Q	1	NULL	-	-	no_errors
MFSD2B	388931	genome.wustl.edu	36	2	24098077	24098077	+	Missense_Mutation	SNP	T	T	A		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	24098077	24098077	T	A	SNP	LOC388931	NM_001080473	human	genbank	54_36p	1	predicted	missense	c.737	p.I246N	0.036	NULL	-	-	no_errors
ADI1	55256	genome.wustl.edu	36	2	3481851	3481851	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	3481851	3481851	T	C	SNP	ADI1	NM_018269	human	genbank	54_36p	-1	reviewed	missense	c.430	p.K144E	1	NULL	-	-	no_errors
PRKCE	5581	genome.wustl.edu	36	2	46059636	46059636	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	46059636	46059636	A	C	SNP	PRKCE	NM_005400	human	genbank	54_36p	1	reviewed	missense	c.590	p.Q197P	1	HMMPfam_C1_1	C2;HMMPfam_C2;Pkinase;HMMPfam_Pkinase;Pkinase_C;HMMPfam_Pkinase_C;C1_1;HMMPfam_C1_1	-	no_errors
EFEMP1	2202	genome.wustl.edu	36	2	55998858	55998858	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	55998858	55998858	C	A	SNP	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	missense	c.130	p.D44Y	1	HMMPfam_EGF_CA	HMMPfam_EGF_CA;superfamily_EGF/Laminin	-	no_errors
ENSG00000144188	0	genome.wustl.edu	36	2	97055666	97055666	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	2	97055666	97055666	A	T	SNP	ENSG00000144188	ENST00000272598	human	ensembl	54_36p	-1	known	missense	c.1111	p.F371I	0	NULL	-	-	no_errors
RALGAPA2	57186	genome.wustl.edu	36	20	20533856	20533856	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	20	20533856	20533856	T	A	SNP	C20orf74	NM_020343	human	genbank	54_36p	-1	validated	missense	c.2001	p.K667N	1	NULL	HMMPfam_Rap_GAP;superfamily_Rap/Ran-GAP (Pfam 02145);superfamily_ARM repeat	-	no_errors
ZMYND8	23613	genome.wustl.edu	36	20	45324569	45324569	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	20	45324569	45324569	G	A	SNP	ZMYND8	NM_183047	human	genbank	54_36p	-1	reviewed	silent	c.1491	p.A497	0.99	NULL	HMMPfam_PWWP;HMMPfam_Bromodomain;HMMPfam_PHD;HMMPfam_zf-MYND;superfamily_FYVE/PHD zinc finger;superfamily_Bromodomain;superfamily_Tudor/PWWP/MBT	-	no_errors
IGL@	3535	genome.wustl.edu	36	22	21465262	21465262	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	22	21465262	21465262	A	T	SNP	IGL@	ENST00000390314	human	ensembl	54_36p	1	known	missense	c.124	p.T42S	0.01	NULL	-	-	no_stop_codon
SGSM3	27352	genome.wustl.edu	36	22	39135225	39135225	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	22	39135225	39135225	G	C	SNP	SGSM3	NM_015705	human	genbank	54_36p	1	validated	missense	c.2014	p.E672Q	1	NULL	-	-	no_errors
PLXNB2	23654	genome.wustl.edu	36	22	49063643	49063643	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	22	49063643	49063643	C	A	SNP	PLXNB2	NM_012401	human	genbank	54_36p	-1	validated	missense	c.2779	p.D927Y	0.722	NULL	-	-	no_errors
IFT57	55081	genome.wustl.edu	36	3	109415503	109415503	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	109415503	109415503	C	T	SNP	IFT57	NM_018010	human	genbank	54_36p	-1	validated	missense	c.550	p.E184K	1	NULL	-	-	no_errors
MYLK	4638	genome.wustl.edu	36	3	124909399	124909399	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	124909399	124909399	A	T	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	missense	c.2282	p.L761H	0.04	HMMPfam_I-set	HMMPfam_Pkinase;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_Protein kinase-like (PK-like);HMMPfam_I-set;superfamily_Immunoglobulin	-	no_errors
SLC12A8	84561	genome.wustl.edu	36	3	126392010	126392010	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	126392010	126392010	T	G	SNP	SLC12A8	NM_024628	human	genbank	54_36p	-1	validated	missense	c.97	p.M33L	1	NULL	-	-	no_errors
LOC389168	389168	genome.wustl.edu	36	3	157187939	157187939	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	157187939	157187939	A	T	SNP	LOC389168	XR_017613	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KCNAB1	7881	genome.wustl.edu	36	3	157321283	157321283	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	157321283	157321283	G	T	SNP	KCNAB1	NM_172160	human	genbank	54_36p	1	reviewed	silent	c.189	p.L63	0.98	NULL	HMMPfam_Aldo_ket_red;superfamily_NAD(P)-linked oxidoreductase	-	no_errors
SLC7A14	57709	genome.wustl.edu	36	3	171727348	171727348	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	171727348	171727348	G	T	SNP	SLC7A14	NM_020949	human	genbank	54_36p	-1	validated	silent	c.72	p.S24	1	NULL	HMMPfam_AA_permease	-	no_errors
CCDC39	339829	genome.wustl.edu	36	3	181860218	181860218	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	181860218	181860218	C	A	SNP	CCDC39	NM_181426	human	genbank	54_36p	-1	validated	nonsense	c.550	p.E184*	1	NULL	-	-	no_errors
ATP11B	23200	genome.wustl.edu	36	3	184066902	184066902	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	184066902	184066902	G	T	SNP	ATP11B	NM_014616	human	genbank	54_36p	1	validated	missense	c.1596	p.K532N	1	NULL	-	-	no_errors
CRELD1	78987	genome.wustl.edu	36	3	9960176	9960176	+	Missense_Mutation	SNP	T	T	A		Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	3	9960176	9960176	T	A	SNP	CRELD1	NM_001031717	human	genbank	54_36p	1	validated	missense	c.1025	p.I342N	0.995	NULL	-	-	no_errors
CTBP1	1487	genome.wustl.edu	36	4	1197364	1197364	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	4	1197364	1197364	G	T	SNP	CTBP1	NM_001328	human	genbank	54_36p	-1	reviewed	missense	c.923	p.P308H	1	HMMPfam_2-Hacid_dh:HMMPfam_2-Hacid_dh_C	HMMPfam_2-Hacid_dh;HMMPfam_2-Hacid_dh_C;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Formate/glycerate dehydrogenase catalytic domain-like	-	no_errors
LRBA	987	genome.wustl.edu	36	4	151490617	151490617	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	4	151490617	151490617	T	C	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.7372	p.I2458V	1	HMMPfam_Beach	HMMPfam_Beach;HMMPfam_WD40;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_DUF1088;superfamily_WD40 repeat-like;superfamily_ARM repeat;superfamily_PH domain-like;superfamily_BEACH domain	-	no_errors
POLR2B	5431	genome.wustl.edu	36	4	57578609	57578609	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	4	57578609	57578609	A	T	SNP	POLR2B	NM_000938	human	genbank	54_36p	1	reviewed	missense	c.2281	p.T761S	1	HMMPfam_RNA_pol_Rpb2_6	HMMPfam_RNA_pol_Rpb2_6;HMMPfam_RNA_pol_Rpb2_7;HMMPfam_RNA_pol_Rpb2_2;HMMPfam_RNA_pol_Rpb2_1;HMMPfam_RNA_pol_Rpb2_3;HMMPfam_RNA_pol_Rpb2_4;HMMPfam_RNA_pol_Rpb2_5;superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
UGT2B17	7367	genome.wustl.edu	36	4	69116210	69116210	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	4	69116210	69116210	A	G	SNP	UGT2B17	NM_001077	human	genbank	54_36p	-1	provisional	silent	c.588	p.P196	0.96	HMMPfam_UDPGT	HMMPfam_UDPGT;superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
SORCS2	57537	genome.wustl.edu	36	4	7756820	7756820	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	4	7756820	7756820	G	A	SNP	SORCS2	NM_020777	human	genbank	54_36p	1	reviewed	missense	c.1327	p.G443S	1	HMMPfam_BNR	HMMPfam_PKD,superfamily_PKD domain,HMMPfam_BNR,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase	-	no_errors
FAM35B2	439965	genome.wustl.edu	36	10	46836889	46836889	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	10	46836889	46836889	G	C	SNP	FAM35B2	ENST00000342900	human	ensembl	54_36p	1	known	missense	c.1381	p.D461H	0.4	NULL	-	-	no_start_codon
OR4C2P	119750	genome.wustl.edu	36	11	48398865	48398865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	11	48398865	48398865	C	T	SNP	OR4C2P	ENST00000330155	human	ensembl	54_36p	1	known	missense	c.494	p.P165L	0.68	NULL	HMMPfam_7tm_1;superfamily_SSF81321	-	no_errors
CTNND2	1501	genome.wustl.edu	36	5	11450167	11450167	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	5	11450167	11450167	T	C	SNP	CTNND2	NM_001332	human	genbank	54_36p	-1	validated	silent	c.588	p.R196	1	NULL	HMMPfam_Arm;superfamily_ARM repeat	-	no_errors
CDH6	1004	genome.wustl.edu	36	5	31303462	31303462	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	5	31303462	31303462	G	C	SNP	CDH6	NM_004932	human	genbank	54_36p	1	reviewed	missense	c.125	p.G42A	1	NULL	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
EGFLAM	133584	genome.wustl.edu	36	5	38474280	38474280	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	5	38474280	38474280	C	T	SNP	EGFLAM	NM_152403	human	genbank	54_36p	1	validated	silent	c.2430	p.C810	1	HMMPfam_EGF	HMMPfam_fn3;HMMPfam_EGF;superfamily_Fibronectin type III;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_1;HMMPfam_Laminin_G_2	-	no_errors
CD180	4064	genome.wustl.edu	36	5	66516124	66516124	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	5	66516124	66516124	A	G	SNP	CD180	NM_005582	human	genbank	54_36p	-1	validated	silent	c.303	p.H101		NULL	-	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79064909	79064909	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	5	79064909	79064909	T	G	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	missense	c.4565	p.V1522G		NULL	HMMPfam_SPRY;HMMPfam_fn3;superfamily_Fibronectin type III	-	no_errors
CHD1	1105	genome.wustl.edu	36	5	98264662	98264662	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	5	98264662	98264662	C	A	SNP	CHD1	NM_001270	human	genbank	54_36p	-1	reviewed	missense	c.612	p.K204N	0.99	NULL	-	-	no_errors
LOC100128140	100128140	genome.wustl.edu	36	17	507347	507347	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	17	507347	507347	T	C	SNP	LOC100128140	XR_037026	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000210211	0	genome.wustl.edu	36	9	5880215	5880215	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	9	5880215	5880215	C	G	SNP	ENSG00000210211	ENST00000387476	human	ensembl	54_36p	1	novel	rna	NULL	NULL	0.001	-	-	-	pseudogene
PTPRK	5796	genome.wustl.edu	36	6	128339552	128339552	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	6	128339552	128339552	A	T	SNP	PTPRK	NM_002844	human	genbank	54_36p	-1	validated	silent	c.3912	p.S1304	1	HMMPfam_Y_phosphatase	superfamily_Fibronectin type III;superfamily_Immunoglobulin;superfamily_(Phosphotyrosine protein) phosphatases II;HMMPfam_Y_phosphatase;HMMPfam_MAM;HMMPfam_fn3;HMMPfam_ig	-	no_errors
LOC643778	643778	genome.wustl.edu	36	6	129521075	129521075	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	6	129521075	129521075	A	G	SNP	LOC643778	XR_017181	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
EHMT2	10919	genome.wustl.edu	36	6	31972245	31972245	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	6	31972245	31972245	G	A	SNP	EHMT2	NM_006709	human	genbank	54_36p	-1	reviewed	missense	c.356	p.S119F	1	NULL	HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_Pre-SET;superfamily_RING/U-box;superfamily_SET domain;HMMPfam_SET	-	no_errors
ETV7	51513	genome.wustl.edu	36	6	36451665	36451665	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	6	36451665	36451665	G	T	SNP	ETV7	NM_016135	human	genbank	54_36p	-1	provisional	missense	c.268	p.L90I	1	NULL	-	-	no_errors
PTCRA	171558	genome.wustl.edu	36	6	42998844	42998844	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	6	42998844	42998844	C	A	SNP	PTCRA	NM_138296	human	genbank	54_36p	1	validated	missense	c.160	p.P54T	0.02	NULL	superfamily_Immunoglobulin	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73032412	73032412	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	6	73032412	73032412	A	T	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	missense	c.3337	p.R1113W	1	NULL	HMMPfam_C2,HMMPfam_PDZ,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
ST7	7982	genome.wustl.edu	36	7	116561414	116561414	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	7	116561414	116561414	A	T	SNP	ST7	NM_021908	human	genbank	54_36p	1	reviewed	missense	c.642	p.E214D	1	HMMPfam_ST7	ST7;HMMPfam_ST7;TPR-like;superfamily_TPR-like	-	no_errors
IQUB	154865	genome.wustl.edu	36	7	122939603	122939603	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	7	122939603	122939603	C	A	SNP	IQUB	NM_178827	human	genbank	54_36p	-1	validated	missense	c.28	p.A10S		NULL	-	-	no_errors
GALNTL5	168391	genome.wustl.edu	36	7	151342712	151342712	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	7	151342712	151342712	A	G	SNP	GALNTL5	NM_145292	human	genbank	54_36p	1	provisional	silent	c.1077	p.G359	1	NULL	HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
STK31	56164	genome.wustl.edu	36	7	23777191	23777191	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	7	23777191	23777191	A	G	SNP	STK31	NM_031414	human	genbank	54_36p	1	reviewed	missense	c.1756	p.S586G	0.99	NULL	HMMPfam_Pkinase;HMMPfam_TUDOR;superfamily_Protein kinase-like (PK-like);superfamily_Staphylococcal nuclease;superfamily_Tudor/PWWP/MBT	-	no_errors
C7orf57	136288	genome.wustl.edu	36	7	48047516	48047516	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	7	48047516	48047516	C	T	SNP	C7orf57	NM_001100159	human	genbank	54_36p	1	validated	missense	c.116	p.S39F	0.94	NULL	-	-	no_errors
AKAP9	10142	genome.wustl.edu	36	7	91560442	91560442	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	7	91560442	91560442	G	T	SNP	AKAP9	NM_005751	human	genbank	54_36p	1	reviewed	nonsense	c.9454	p.E3152*	1	NULL	-	-	no_errors
ZSCAN21	7589	genome.wustl.edu	36	7	99499348	99499348	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	7	99499348	99499348	T	A	SNP	ZSCAN21	NM_145914	human	genbank	54_36p	1	validated	missense	c.594	p.D198E	0.28	NULL	HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
HAS2	3037	genome.wustl.edu	36	8	122710346	122710346	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	8	122710346	122710346	C	A	SNP	HAS2	NM_005328	human	genbank	54_36p	-1	reviewed	missense	c.416	p.G139V	1	NULL	HMMPfam_Glycos_transf_2;superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
RAPGEF1	2889	genome.wustl.edu	36	9	133454022	133454022	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	9	133454022	133454022	C	A	SNP	RAPGEF1	NM_198679	human	genbank	54_36p	-1	reviewed	missense	c.2536	p.G846W	0.997	NULL	RasGEF_N,HMMPfam_RasGEF_N,RasGEF,HMMPfam_RasGEF	-	no_errors
C9orf79	286234	genome.wustl.edu	36	9	89690173	89690173	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	9	89690173	89690173	C	A	SNP	C9orf79	NM_178828	human	genbank	54_36p	1	validated	silent	c.951	p.G317		NULL	-	-	no_errors
IPPK	64768	genome.wustl.edu	36	9	94440220	94440220	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	9	94440220	94440220	C	T	SNP	IPPK	NM_022755	human	genbank	54_36p	-1	validated	missense	c.800	p.R267Q	0.06	HMMPfam_DUF941	HMMPfam_DUF941	-	no_errors
MUM1L1	139221	genome.wustl.edu	36	X	105337315	105337315	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	X	105337315	105337315	A	T	SNP	MUM1L1	ENST00000337685	human	ensembl	54_36p	1	known	missense	c.1234	p.S412C	1	NULL	superfamily_SSF63748	-	no_errors
GPR101	83550	genome.wustl.edu	36	X	135941269	135941269	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	X	135941269	135941269	G	C	SNP	GPR101	NM_054021	human	genbank	54_36p	-1	provisional	missense	c.231	p.D77E	1	HMMPfam_7tm_1	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
MAGEB5	347541	genome.wustl.edu	36	X	26145962	26145962	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	X	26145962	26145962	C	A	SNP	MAGEB5	XM_293407	human	genbank	54_36p	1	model	missense	c.899	p.A300D	0.01	NULL	-	-	no_errors
HUWE1	10075	genome.wustl.edu	36	X	53594876	53594876	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	X	53594876	53594876	C	A	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	splice_site	c.9097-1	e62-1	1	-	-	-	no_errors
PRSS27	83886	genome.wustl.edu	36	16	2704190	2704191	+	Nonsense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e05146f2-688d-416b-a992-e2c7a2b7b244	a7b1690e-9c43-4c92-b1a8-6e1c488da73a	16	2704190	2704191	CC	AG	DNP	PRSS27	NM_031948	human	genbank	54_36p	-1	validated	nonsense	c.385_384	p.EL129*	0.985:0.986	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
