Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
KCNA10	3744	genome.wustl.edu	36	1	110862267	110862267	+	Silent	SNP	C	C	G		Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	1	110862267	110862267	C	G	SNP	KCNA10	NM_005549	human	genbank	54_36p	-1	reviewed	silent	c.666	p.S222	0.16	NULL	-	-	no_errors
OVGP1	5016	genome.wustl.edu	36	1	111770772	111770772	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	1	111770772	111770772	G	C	SNP	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	missense	c.70	p.L24V	1	HMMPfam_Glyco_hydro_18	HMMPfam_Glyco_hydro_18;superfamily_(Trans)glycosidases;superfamily_Chitinase insertion domain	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152299686	152299686	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	1	152299686	152299686	T	G	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.2804	p.Q935P	0.11	NULL	-	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152365549	152365549	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	1	152365549	152365549	T	C	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	silent	c.1200	p.T400		NULL	-	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226499829	226499829	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	1	226499829	226499829	C	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	missense	c.3574	p.Q1192E	1	NULL	-	-	no_errors
OR2W5	441932	genome.wustl.edu	36	1	245721382	245721382	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	1	245721382	245721382	C	A	SNP	OR2W5	NM_001004698	human	genbank	54_36p	1	provisional	silent	c.330	p.T110		NULL	-	-	no_errors
INPP5F	22876	genome.wustl.edu	36	10	121577046	121577046	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	10	121577046	121577046	G	T	SNP	INPP5F	NM_014937	human	genbank	54_36p	1	reviewed	missense	c.3163	p.V1055L	0.03	NULL	HMMPfam_Syja_N	-	no_errors
WAC	51322	genome.wustl.edu	36	10	28940858	28940858	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	10	28940858	28940858	G	T	SNP	WAC	NM_016628	human	genbank	54_36p	1	reviewed	splice_site	c.1437+1	e10+1	1	-	-	-	no_errors
GDF2	2658	genome.wustl.edu	36	10	48033912	48033912	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	10	48033912	48033912	G	C	SNP	GDF2	NM_016204	human	genbank	54_36p	-1	reviewed	missense	c.962	p.A321G	0.04	NULL	-	-	no_errors
FBXO18	84893	genome.wustl.edu	36	10	5998369	5998369	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	10	5998369	5998369	A	T	SNP	FBXO18	NM_032807	human	genbank	54_36p	1	reviewed	missense	c.1885	p.I629F	0.99	NULL	-	-	no_errors
ENSG00000214405	0	genome.wustl.edu	36	3	105264954	105264954	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	3	105264954	105264954	C	G	SNP	ENSG00000214405	ENST00000341355	human	ensembl	54_36p	1	known	missense	c.388	p.Q130E	1	NULL	-	-	no_start_codon
SIK3	23387	genome.wustl.edu	36	11	116237306	116237306	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	11	116237306	116237306	T	G	SNP	KIAA0999	NM_025164	human	genbank	54_36p	-1	validated	missense	c.2001	p.L667F	1	NULL	HMMPfam_Pkinase;superfamily_UBA-like;superfamily_Protein kinase-like (PK-like)	-	no_errors
PTH	5741	genome.wustl.edu	36	11	13470546	13470546	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	11	13470546	13470546	A	G	SNP	PTH	NM_000315	human	genbank	54_36p	-1	reviewed	silent	c.330	p.T110	0.06	HMMPfam_Parathyroid	HMMPfam_Parathyroid	-	no_errors
LOC729960	729960	genome.wustl.edu	36	11	49348473	49348473	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	11	49348473	49348473	T	A	SNP	LOC729960	XR_016034	human	genbank	54_36p	1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
GIF	2694	genome.wustl.edu	36	11	59366546	59366546	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	11	59366546	59366546	T	A	SNP	GIF	NM_005142	human	genbank	54_36p	-1	reviewed	missense	c.457	p.I153L	0.01	NULL	-	-	no_errors
C11orf30	56946	genome.wustl.edu	36	11	75852728	75852728	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	11	75852728	75852728	T	C	SNP	C11orf30	NM_020193	human	genbank	54_36p	1	validated	missense	c.787	p.F263L	1	NULL	HMMPfam_ENT	-	no_errors
STAB2	55576	genome.wustl.edu	36	12	102508878	102508878	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	12	102508878	102508878	T	A	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.155	p.V52D	0.02	NULL	HMMPfam_Xlink;HMMPfam_Fasciclin;HMMPfam_EGF;HMMPfam_EGF_alliinase;superfamily_Mannose 6-phosphate receptor domain;superfamily_Growth factor receptor domain;HMMPfam_EGF_2;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_FAS1 domain	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108144727	108144727	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	12	108144727	108144727	G	A	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	silent	c.3597	p.S1199	0.29	HMMPfam_ACC_central	HMMPfam_Carboxyl_trans;HMMPfam_Biotin_lipoyl;HMMPfam_CPSase_L_D2;HMMPfam_CPSase_L_chain;HMMPfam_Biotin_carb_C;superfamily_Single hybrid motif;superfamily_Rudiment single hybrid motif;HMMPfam_ACC_central;superfamily_ClpP/crotonase;superfamily_PreATP-grasp domain;superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
LOC643668	643668	genome.wustl.edu	36	12	18737273	18737273	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	12	18737273	18737273	G	C	SNP	LOC643668	XR_016986	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ADAMTS20	80070	genome.wustl.edu	36	12	42134112	42134112	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	12	42134112	42134112	T	G	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.1625	p.H542P	1	NULL	"superfamily_Metalloproteases (""zincins"") catalytic domain;superfamily_TSP-1 type 1 repeat;TSP_1;HMMPfam_TSP_1;Reprolysin;HMMPfam_Reprolysin;Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_spacer1;HMMPfam_ADAM_spacer1;GON;HMMPfam_GON"	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31810178	31810178	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	-	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	13	31810178	31810178	T	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.3686	p.S1230fs	0.94	HMMPfam_BRCA2	superfamily_Nucleic acid-binding proteins;superfamily_BRCA2 helical domain;superfamily_BRCA2 tower domain;BRCA2;HMMPfam_BRCA2;BRCA-2_OB1;HMMPfam_BRCA-2_OB1;BRCA-2_OB3;HMMPfam_BRCA-2_OB3;Tower;HMMPfam_Tower;BRCA-2_helical;HMMPfam_BRCA-2_helical	(deletion:cds_exon[31808402;31813333])	no_errors
ZBTB1	22890	genome.wustl.edu	36	14	64059932	64059932	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	14	64059932	64059932	A	T	SNP	ZBTB1	ENST00000394712	human	ensembl	54_36p	1	known	missense	c.1957	p.M653L	1	NULL	-	-	no_errors
PRC1	9055	genome.wustl.edu	36	15	89318428	89318428	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	15	89318428	89318428	G	C	SNP	PRC1	NM_003981	human	genbank	54_36p	-1	reviewed	missense	c.1403	p.P468R	0.15	HMMPfam_MAP65_ASE1	HMMPfam_MAP65_ASE1	-	no_errors
SYT17	51760	genome.wustl.edu	36	16	19102587	19102587	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	16	19102587	19102587	T	G	SNP	SYT17	NM_016524	human	genbank	54_36p	1	validated	missense	c.568	p.F190V	1	NULL	-	-	no_errors
ATP2A1	487	genome.wustl.edu	36	16	28813022	28813022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	16	28813022	28813022	G	A	SNP	ATP2A1	NM_173201	human	genbank	54_36p	1	reviewed	missense	c.1141	p.E381K	0.98	NULL	HMMPfam_Cation_ATPase_N;HMMPfam_Hydrolase;HMMPfam_Cation_ATPase_C;HMMPfam_E1-E2_ATPase;superfamily_HAD-like;superfamily_Calcium ATPase transduction domain A;superfamily_Metal cation-transporting ATPase ATP-binding domain N;superfamily_Calcium ATPase transmembrane domain M	-	no_errors
TSR1	55720	genome.wustl.edu	36	17	2183158	2183158	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	17	2183158	2183158	C	G	SNP	TSR1	NM_018128	human	genbank	54_36p	-1	validated	missense	c.1152	p.K384N	0.97	NULL	-	-	no_errors
AKAP1	8165	genome.wustl.edu	36	17	52549231	52549231	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	17	52549231	52549231	T	A	SNP	AKAP1	NM_003488	human	genbank	54_36p	1	reviewed	missense	c.2444	p.V815D	1	HMMPfam_TUDOR	HMMPfam_KH_1;HMMPfam_TUDOR;superfamily_Eukaryotic type KH-domain (KH-domain type I);superfamily_Tudor/PWWP/MBT	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519280	7519280	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	17	7519280	7519280	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-1	e4-1	1	-	-	-	no_errors
ARHGEF15	22899	genome.wustl.edu	36	17	8163429	8163429	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	17	8163429	8163429	A	G	SNP	ARHGEF15	NM_173728	human	genbank	54_36p	1	reviewed	missense	c.2261	p.E754G	1	NULL	HMMPfam_RhoGEF;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
HRH4	59340	genome.wustl.edu	36	18	20311424	20311424	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	18	20311424	20311424	A	T	SNP	HRH4	NM_021624	human	genbank	54_36p	1	reviewed	missense	c.1073	p.Y358F	1	NULL	-	-	no_errors
KIAA1468	57614	genome.wustl.edu	36	18	58045512	58045512	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	18	58045512	58045512	T	G	SNP	KIAA1468	NM_020854	human	genbank	54_36p	1	validated	nonsense	c.869	p.L290*	1	NULL	-	-	no_errors
ZNF429	353088	genome.wustl.edu	36	19	21505300	21505300	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	19	21505300	21505300	G	C	SNP	ZNF429	NM_001001415	human	genbank	54_36p	1	provisional	missense	c.200	p.R67P		NULL	-	-	no_errors
ZNF285B	147711	genome.wustl.edu	36	19	49668632	49668632	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	19	49668632	49668632	A	C	SNP	ZNF285B	XR_016906	human	genbank	54_36p	1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
SIX5	147912	genome.wustl.edu	36	19	50963225	50963225	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	19	50963225	50963225	G	A	SNP	SIX5	NM_175875	human	genbank	54_36p	-1	validated	silent	c.718	p.L240	1	HMMPfam_Homeobox	HMMPfam_Homeobox;superfamily_Homeodomain-like	-	no_errors
BOLL	66037	genome.wustl.edu	36	2	198339554	198339554	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	2	198339554	198339554	A	C	SNP	BOLL	NM_197970	human	genbank	54_36p	-1	validated	missense	c.535	p.S179A	1	NULL	-	-	no_errors
LOC402116	402116	genome.wustl.edu	36	2	209753827	209753827	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	2	209753827	209753827	A	G	SNP	LOC402116	XR_017081	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
IFT172	26160	genome.wustl.edu	36	2	27561810	27561810	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	2	27561810	27561810	G	A	SNP	IFT172	NM_015662	human	genbank	54_36p	-1	validated	missense	c.104	p.T35I	1	NULL	-	-	no_errors
MPHOSPH10	10199	genome.wustl.edu	36	2	71230613	71230613	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	2	71230613	71230613	A	G	SNP	MPHOSPH10	NM_005791	human	genbank	54_36p	1	reviewed	missense	c.2006	p.K669R	1	NULL	-	-	no_errors
THNSL2	55258	genome.wustl.edu	36	2	88266539	88266539	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	2	88266539	88266539	C	A	SNP	THNSL2	ENST00000377254	human	ensembl	54_36p	1	known	missense	c.1085	p.P362Q	0.976	NULL	-	-	no_errors
NCOA3	8202	genome.wustl.edu	36	20	45711202	45711202	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	20	45711202	45711202	C	G	SNP	NCOA3	NM_181659	human	genbank	54_36p	1	reviewed	missense	c.3593	p.P1198R	0.49	NULL	HMMPfam_HLH;superfamily_Nuclear receptor coactivator interlocking domain;HMMPfam_DUF1518;superfamily_HLH helix-loop-helix DNA-binding domain;HMMPfam_PAS;HMMPfam_Nuc_rec_co-act;HMMPfam_SRC-1;superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
AURKA	6790	genome.wustl.edu	36	20	54381930	54381930	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	20	54381930	54381930	T	C	SNP	AURKA	NM_003600	human	genbank	54_36p	-1	reviewed	silent	c.795	p.G265	0.87	HMMPfam_Pkinase	Pkinase;HMMPfam_Pkinase	-	no_errors
MYT1	4661	genome.wustl.edu	36	20	62313927	62313927	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	20	62313927	62313927	G	A	SNP	MYT1	NM_004535	human	genbank	54_36p	1	reviewed	silent	c.1509	p.T503	0.64	HMMPfam_zf-C2HC	HMMPfam_zf-C2HC;HMMPfam_MYT1;superfamily_CCHHC domain	-	no_errors
APOBEC3B	9582	genome.wustl.edu	36	22	37717443	37717443	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	22	37717443	37717443	C	T	SNP	APOBEC3B	NM_004900	human	genbank	54_36p	1	reviewed	missense	c.884	p.A295V	0.01	HMMPfam_APOBEC_N	HMMPfam_APOBEC_C;HMMPfam_APOBEC_N;superfamily_Cytidine deaminase-like	-	no_errors
PHF21B	112885	genome.wustl.edu	36	22	43691122	43691122	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	22	43691122	43691122	T	G	SNP	PHF21B	NM_138415	human	genbank	54_36p	-1	validated	missense	c.266	p.D89A	1	NULL	HMMPfam_PHD,superfamily_FYVE/PHD zinc finger	-	no_errors
LOC100129306	100129306	genome.wustl.edu	36	13	26489838	26489838	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	13	26489838	26489838	A	G	SNP	LOC100129306	XM_001719801	human	genbank	54_36p	-1	model	silent	c.138	p.C46	1	NULL	-	-	pseudogene
GPR149	344758	genome.wustl.edu	36	3	155629297	155629297	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	3	155629297	155629297	A	C	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.802	p.S268A	0.03	NULL	-	-	no_errors
TNIK	23043	genome.wustl.edu	36	3	172340001	172340001	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	3	172340001	172340001	C	A	SNP	TNIK	NM_015028	human	genbank	54_36p	-1	provisional	missense	c.1371	p.Q457H	1	NULL	HMMPfam_Pkinase;HMMPfam_CNH;superfamily_Protein kinase-like (PK-like);superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors
TBC1D5	9779	genome.wustl.edu	36	3	17254817	17254817	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	3	17254817	17254817	C	G	SNP	TBC1D5	NM_014744	human	genbank	54_36p	-1	validated	missense	c.1430	p.S477T	0.15	NULL	-	-	no_errors
PIK3CA	5290	genome.wustl.edu	36	3	180411038	180411038	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	3	180411038	180411038	C	T	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	silent	c.1530	p.H510	1	NULL	PI3K_rbd;HMMPfam_PI3K_rbd;PI3_PI4_kinase;HMMPfam_PI3_PI4_kinase;PI3Ka;HMMPfam_PI3Ka;PI3K_C2;HMMPfam_PI3K_C2;PI3K_p85B;HMMPfam_PI3K_p85B	-	no_errors
LAMP3	27074	genome.wustl.edu	36	3	184352986	184352986	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	3	184352986	184352986	C	G	SNP	LAMP3	NM_014398	human	genbank	54_36p	-1	validated	splice_site	c.760-1	e3-1	0.55	-	-	-	no_errors
NEK1	4750	genome.wustl.edu	36	4	170713557	170713557	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	4	170713557	170713557	C	T	SNP	NEK1	NM_012224	human	genbank	54_36p	-1	validated	missense	c.1451	p.R484H	1	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
SORBS2	8470	genome.wustl.edu	36	4	186773046	186773046	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	4	186773046	186773046	T	C	SNP	SORBS2	NM_021069	human	genbank	54_36p	-1	reviewed	missense	c.2816	p.E939G	1	NULL	-	-	no_errors
EVC2	132884	genome.wustl.edu	36	4	5678506	5678517	+	In_Frame_Del	DEL	TTCCATTTGGTC	TTCCATTTGGTC	-		Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	TTCCATTTGGTC	TTCCATTTGGTC	TTCCATTTGGTC	-	TTCCATTTGGTC	TTCCATTTGGTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	4	5678506	5678517	TTCCATTTGGTC	-	DEL	EVC2	NM_147127	human	genbank	54_36p	-1	validated	in_frame_del	c.1917_1906	p.DQME636in_frame_del	0.078:0.452:0.767:0.949:0.957:0.961:0.964:0.977:0.974:0.833:0.867:0.874	NULL	-	(deletion:cds_exon[5678377,5678536])	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167550038	167550038	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	5	167550038	167550038	G	T	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	missense	c.2688	p.W896C	1	NULL	-	-	no_errors
MTMR12	54545	genome.wustl.edu	36	5	32277959	32277959	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	5	32277959	32277959	C	G	SNP	MTMR12	NM_001040446	human	genbank	54_36p	-1	reviewed	missense	c.1132	p.E378Q	0.9	NULL	-	-	no_errors
MTHFD1L	25902	genome.wustl.edu	36	6	151372769	151372769	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	6	151372769	151372769	G	C	SNP	MTHFD1L	NM_015440	human	genbank	54_36p	1	validated	missense	c.2247	p.M749I	1	HMMPfam_FTHFS	HMMPfam_FTHFS;HMMPfam_THF_DHG_CYH;HMMPfam_THF_DHG_CYH_C;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Aminoacid dehydrogenase-like N-terminal domain	-	no_errors
IGF2R	3482	genome.wustl.edu	36	6	160424983	160424983	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	6	160424983	160424983	C	G	SNP	IGF2R	NM_000876	human	genbank	54_36p	1	reviewed	missense	c.5845	p.R1949G	0.92	HMMPfam_CIMR	HMMPfam_CIMR;HMMPfam_fn2;superfamily_Mannose 6-phosphate receptor domain;superfamily_Kringle-like	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73040845	73040845	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	6	73040845	73040845	G	A	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	silent	c.3471	p.P1157	1	NULL	HMMPfam_C2;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_FYVE/PHD zinc finger	-	no_errors
SENP6	26054	genome.wustl.edu	36	6	76429850	76429850	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	6	76429850	76429850	C	G	SNP	SENP6	NM_015571	human	genbank	54_36p	1	validated	missense	c.890	p.T297S	0.66	NULL	HMMPfam_Peptidase_C48;superfamily_Cysteine proteinases	-	no_errors
MUC3B	57876	genome.wustl.edu	36	7	100390098	100390098	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	7	100390098	100390098	C	A	SNP	MUC3B	ENST00000332750	human	ensembl	54_36p	1	known	missense	c.1786	p.L596I		NULL	-	-	no_start_codon
STAG3	10734	genome.wustl.edu	36	7	99634112	99634112	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	7	99634112	99634112	C	A	SNP	STAG3	NM_012447	human	genbank	54_36p	1	validated	silent	c.1323	p.A441	0.02	NULL	HMMPfam_STAG;superfamily_ARM repeat	-	no_errors
LOC100129960	100129960	genome.wustl.edu	36	8	71017903	71017903	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	8	71017903	71017903	A	T	SNP	LOC100129960	XR_037318	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000119660	0	genome.wustl.edu	36	14	74828581	74828581	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	14	74828581	74828581	G	A	SNP	ENSG00000119660	ENST00000238638	human	ensembl	54_36p	-1	known	missense	c.383	p.T128I	0.01	NULL	-	-	no_errors
ARHGEF10	9639	genome.wustl.edu	36	8	1799956	1799956	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	8	1799956	1799956	A	C	SNP	ARHGEF10	NM_014629	human	genbank	54_36p	1	reviewed	missense	c.492	p.E164D		NULL	HMMPfam_RhoGEF;superfamily_WD40 repeat-like;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like	-	no_errors
LYN	4067	genome.wustl.edu	36	8	57041944	57041944	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	8	57041944	57041944	G	C	SNP	LYN	NM_002350	human	genbank	54_36p	1	validated	missense	c.907	p.V303L	1	HMMPfam_Pkinase_Tyr	HMMPfam_SH2;HMMPfam_Pkinase_Tyr;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_Protein kinase-like (PK-like);superfamily_SH2 domain	-	no_errors
BCORL1	63035	genome.wustl.edu	36	X	128974829	128974829	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	X	128974829	128974829	A	T	SNP	BCORL1	NM_021946	human	genbank	54_36p	1	validated	missense	c.400	p.N134Y		NULL	HMMPfam_Ank;superfamily_Ankyrin repeat	-	no_errors
TMEM27	57393	genome.wustl.edu	36	X	15556023	15556023	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	X	15556023	15556023	G	A	SNP	TMEM27	NM_020665	human	genbank	54_36p	-1	provisional	missense	c.661	p.P221S	1	NULL	-	-	no_errors
AWAT1	158833	genome.wustl.edu	36	X	69372713	69372713	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	X	69372713	69372713	C	T	SNP	AWAT1	NM_001013579	human	genbank	54_36p	1	provisional	missense	c.254	p.T85M	0.985	NULL	-	-	no_errors
TAF1	6872	genome.wustl.edu	36	X	70544593	70544593	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	X	70544593	70544593	C	G	SNP	TAF1	NM_004606	human	genbank	54_36p	1	reviewed	missense	c.4311	p.D1437E	1	HMMPfam_Bromodomain	Bromodomain;HMMPfam_Bromodomain;TBP-binding;HMMPfam_TBP-binding;TAF(II)230 TBP-binding fragment;superfamily_TAF(II)230 TBP-binding fragment;superfamily_Bromodomain	-	no_errors
LOC727874	727874	genome.wustl.edu	36	X	79703680	79703680	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15b867fb-7a7b-4158-9abd-91870ba77eb7	29711d3a-d06a-45e5-a4a1-98527b64431f	X	79703680	79703680	C	T	SNP	LOC727874	XR_042356	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
