Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SLC27A3	11000	genome.wustl.edu	36	1	152017344	152017344	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	152017344	152017344	C	A	SNP	SLC27A3	NM_024330	human	genbank	54_36p	1	provisional	silent	c.1386	p.R462	1	NULL	-	-	no_errors
CROCC	9696	genome.wustl.edu	36	1	17168359	17168359	+	Silent	SNP	G	G	A		Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	17168359	17168359	G	A	SNP	CROCC	NM_014675	human	genbank	54_36p	1	validated	silent	c.5238	p.R1746	0.998	NULL	-	-	no_errors
PPP1R15B	84919	genome.wustl.edu	36	1	202646965	202646965	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	202646965	202646965	C	A	SNP	PPP1R15B	NM_032833	human	genbank	54_36p	-1	validated	silent	c.198	p.L66	0.75	NULL	-	-	no_errors
OR2L8	391190	genome.wustl.edu	36	1	246179561	246179561	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	246179561	246179561	G	C	SNP	OR2L8	NM_001001963	human	genbank	54_36p	1	provisional	missense	c.779	p.R260P		NULL	-	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31919092	31919092	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	31919092	31919092	C	T	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	splice_site	c.2610+1	e38+1	1	-	-	-	no_errors
C1orf190	541468	genome.wustl.edu	36	1	46441791	46441791	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	46441791	46441791	G	C	SNP	C1orf190	NM_001013615	human	genbank	54_36p	1	validated	missense	c.106	p.E36Q	0.99	NULL	-	-	no_errors
FAF1	11124	genome.wustl.edu	36	1	50713925	50713925	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	50713925	50713925	G	C	SNP	FAF1	NM_007051	human	genbank	54_36p	-1	reviewed	silent	c.1668	p.S556	1	NULL	HMMPfam_UBX;superfamily_UBA-like;superfamily_Ubiquitin-like	-	no_errors
PGM1	5236	genome.wustl.edu	36	1	63874627	63874627	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	1	63874627	63874627	C	T	SNP	PGM1	NM_002633	human	genbank	54_36p	1	provisional	silent	c.1008	p.P336	1	HMMPfam_PGM_PMM_III	superfamily_Phosphoglucomutase first 3 domains;superfamily_Phosphoglucomutase C-terminal domain;HMMPfam_PGM_PMM_IV;HMMPfam_PGM_PMM_I;HMMPfam_PGM_PMM_II;HMMPfam_PGM_PMM_III	-	no_errors
BAG3	9531	genome.wustl.edu	36	10	121426356	121426356	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	10	121426356	121426356	G	A	SNP	BAG3	NM_004281	human	genbank	54_36p	1	reviewed	missense	c.1300	p.G434R	0.31	HMMPfam_BAG	HMMPfam_WW;superfamily_WW domain;HMMPfam_BAG;superfamily_BAG domain	-	no_errors
KIAA1274	27143	genome.wustl.edu	36	10	71961158	71961158	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	10	71961158	71961158	T	A	SNP	KIAA1274	NM_014431	human	genbank	54_36p	1	validated	missense	c.575	p.L192H	1	NULL	superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SLC17A6	57084	genome.wustl.edu	36	11	22354124	22354124	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	11	22354124	22354124	C	A	SNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	missense	c.1195	p.L399M	0.93	HMMPfam_MFS_1	HMMPfam_MFS_1;superfamily_MFS general substrate transporter	-	no_errors
OR5AS1	219447	genome.wustl.edu	36	11	55555264	55555264	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	11	55555264	55555264	G	C	SNP	OR5AS1	NM_001001921	human	genbank	54_36p	1	provisional	missense	c.794	p.S265T	0.01	NULL	-	-	no_errors
OR5B2	390190	genome.wustl.edu	36	11	57946621	57946621	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	11	57946621	57946621	C	T	SNP	OR5B2	NM_001005566	human	genbank	54_36p	-1	provisional	silent	c.690	p.K230	0.01	NULL	-	-	no_errors
RNF169	254225	genome.wustl.edu	36	11	74224512	74224512	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	11	74224512	74224512	A	G	SNP	RNF169	NM_001098638	human	genbank	54_36p	1	validated	missense	c.1216	p.I406V	1	NULL	-	-	no_errors
NOX4	50507	genome.wustl.edu	36	11	88863277	88863277	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	11	88863277	88863277	C	A	SNP	NOX4	NM_016931	human	genbank	54_36p	-1	reviewed	missense	c.150	p.L50F	1	NULL	HMMPfam_FAD_binding_8;HMMPfam_NAD_binding_6;HMMPfam_Ferric_reduct;superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain;superfamily_Riboflavin synthase domain-like	-	no_errors
NT5DC3	51559	genome.wustl.edu	36	12	102732871	102732871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	12	102732871	102732871	G	A	SNP	NT5DC3	NM_001031701	human	genbank	54_36p	-1	validated	missense	c.367	p.R123W	1	NULL	-	-	no_errors
TAS2R43	259289	genome.wustl.edu	36	12	11135240	11135240	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	12	11135240	11135240	G	C	SNP	TAS2R43	NM_176884	human	genbank	54_36p	-1	provisional	missense	c.856	p.L286V	0.01	NULL	-	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130054769	130054769	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	12	130054769	130054769	C	A	SNP	GPR133	NM_198827	human	genbank	54_36p	1	validated	silent	c.1230	p.I410	0.01	NULL	HMMPfam_GPS;HMMPfam_7tm_2;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Family A G protein-coupled receptor-like	-	no_errors
ACSM4	341392	genome.wustl.edu	36	12	7354409	7354409	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	12	7354409	7354409	C	T	SNP	ACSM4	NM_001080454	human	genbank	54_36p	1	inferred	silent	c.420	p.I140	0.86	NULL	-	-	no_errors
FGD6	55785	genome.wustl.edu	36	12	94002491	94002491	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	12	94002491	94002491	C	G	SNP	FGD6	NM_018351	human	genbank	54_36p	-1	validated	missense	c.4170	p.E1390D	0.99	NULL	-	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18649364	18649364	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	13	18649364	18649364	C	T	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	silent	c.759	p.T253	0.96	HMMPfam_Tubulin_C	HMMPfam_Tubulin;HMMPfam_Tubulin_C;superfamily_Tubulin nucleotide-binding domain-like;superfamily_Tubulin C-terminal domain-like	-	no_errors
RHPN2P1	646090	genome.wustl.edu	36	15	18693880	18693880	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	15	18693880	18693880	C	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL		-	-	-	pseudogene
ZNF770	54989	genome.wustl.edu	36	15	33061340	33061340	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	15	33061340	33061340	G	A	SNP	ZNF770	NM_014106	human	genbank	54_36p	-1	validated	missense	c.1588	p.P530S	1	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BRD4	23476	genome.wustl.edu	36	19	15240765	15240765	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	19	15240765	15240765	C	T	SNP	BRD4	NM_058243	human	genbank	54_36p	-1	reviewed	missense	c.374	p.C125Y	1	HMMPfam_Bromodomain	HMMPfam_Bromodomain;superfamily_Bromodomain	-	no_errors
KIRREL2	84063	genome.wustl.edu	36	19	41043070	41043070	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	19	41043070	41043070	A	G	SNP	KIRREL2	NM_199180	human	genbank	54_36p	1	validated	silent	c.705	p.P235	1	HMMPfam_I-set	HMMPfam_I-set;HMMPfam_V-set;HMMPfam_C2-set_2;superfamily_Immunoglobulin	-	no_errors
CYP2F1	1572	genome.wustl.edu	36	19	46319722	46319722	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	19	46319722	46319722	C	T	SNP	CYP2F1	NM_000774	human	genbank	54_36p	1	reviewed	silent	c.666	p.S222	0	NULL	-	-	no_errors
CIC	23152	genome.wustl.edu	36	19	47488302	47488314	+	Frame_Shift_Del	DEL	GTGCAGTCAGCGG	GTGCAGTCAGCGG	-	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	GTGCAGTCAGCGG	GTGCAGTCAGCGG	GTGCAGTCAGCGG	-	GTGCAGTCAGCGG	GTGCAGTCAGCGG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	19	47488302	47488314	GTGCAGTCAGCGG	-	DEL	CIC	NM_015125	human	genbank	54_36p	1	validated	frame_shift_del	c.3019_3031	p.V1007fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.998:0.974:0.690:0.757	NULL	HMMPfam_HMG_box;superfamily_HMG-box	(deletion:cds_exon[47488292;47488458])	no_errors
MYH14	79784	genome.wustl.edu	36	19	55496813	55496813	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	19	55496813	55496813	G	T	SNP	MYH14	NM_001077186	human	genbank	54_36p	1	reviewed	missense	c.5454	p.Q1818H	1	NULL	-	-	no_errors
NDUFS1	4719	genome.wustl.edu	36	2	206711533	206711533	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	2	206711533	206711533	A	C	SNP	NDUFS1	NM_005006	human	genbank	54_36p	-1	reviewed	missense	c.1313	p.L438R	1	HMMPfam_Molybdopterin	HMMPfam_Fer2;superfamily_2Fe-2S ferredoxin-like;HMMPfam_Molybdopterin;HMMPfam_DUF1982;superfamily_Formate dehydrogenase/DMSO reductase domains 1-3;superfamily_4Fe-4S ferredoxins	-	no_errors
RNF144A	9781	genome.wustl.edu	36	2	7054521	7054521	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	2	7054521	7054521	A	C	SNP	RNF144A	NM_014746	human	genbank	54_36p	1	reviewed	silent	c.13	p.R5	1	NULL	-	-	no_errors
NCOA6	23054	genome.wustl.edu	36	20	32792313	32792313	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	20	32792313	32792313	G	T	SNP	NCOA6	NM_014071	human	genbank	54_36p	-1	reviewed	missense	c.5408	p.S1803Y	1	NULL	-	-	no_errors
DTX3L	151636	genome.wustl.edu	36	3	123770782	123770782	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	123770782	123770782	A	C	SNP	DTX3L	NM_138287	human	genbank	54_36p	1	validated	missense	c.1156	p.K386Q	0.3	NULL	HMMPfam_zf-C3HC4;superfamily_RING/U-box	-	no_errors
RPL32	6161	genome.wustl.edu	36	3	12855849	12855849	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	12855849	12855849	T	A	SNP	RPL32	NM_000994	human	genbank	54_36p	-1	reviewed	nonsense	c.277	p.K93*	1	NULL	-	-	no_errors
MCF2L2	23101	genome.wustl.edu	36	3	184416547	184416556	+	Frame_Shift_Del	DEL	TGCTGAATCT	TGCTGAATCT	-	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	TGCTGAATCT	TGCTGAATCT	TGCTGAATCT	-	TGCTGAATCT	TGCTGAATCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	184416547	184416556	TGCTGAATCT	-	DEL	MCF2L2	NM_015078	human	genbank	54_36p	-1	validated	frame_shift_del	c.2400_2391	p.K797fs	0.195:0.202:0.201:0.226:0.283:0.282:0.286:0.324:0.404:0.438	NULL	-	(deletion:cds_exon[184416451;184416576])	no_errors
LOC285346	285346	genome.wustl.edu	36	3	44516194	44516194	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	44516194	44516194	C	T	SNP	LOC285346	XM_001717544	human	genbank	54_36p	-1	model	missense	c.1082	p.C361Y	1	NULL	-	-	no_errors
KIF15	56992	genome.wustl.edu	36	3	44842876	44842876	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	44842876	44842876	G	C	SNP	KIF15	NM_020242	human	genbank	54_36p	1	validated	missense	c.2706	p.L902F	1	NULL	HMMPfam_Kinesin;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_BAG domain	-	no_errors
ATRIP	84126	genome.wustl.edu	36	3	48477017	48477017	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	48477017	48477017	A	G	SNP	ATRIP	NM_130384	human	genbank	54_36p	1	reviewed	silent	c.1560	p.G520		NULL	-	-	no_errors
NISCH	11188	genome.wustl.edu	36	3	52497361	52497361	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	52497361	52497361	G	A	SNP	NISCH	NM_007184	human	genbank	54_36p	1	validated	missense	c.2813	p.R938H	1	NULL	-	-	no_errors
ABHD6	57406	genome.wustl.edu	36	3	58254519	58254519	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	3	58254519	58254519	A	G	SNP	ABHD6	NM_020676	human	genbank	54_36p	1	validated	missense	c.1001	p.K334R	1	NULL	-	-	no_errors
ENSG00000214613	0	genome.wustl.edu	36	16	32928349	32928349	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	16	32928349	32928349	C	T	SNP	ENSG00000214613	ENST00000398668	human	ensembl	54_36p	1	known	nonsense	c.199	p.R67*	0.99	NULL	-	-	no_start_codon:no_stop_codon
ODAM	54959	genome.wustl.edu	36	4	71100839	71100839	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	4	71100839	71100839	T	G	SNP	ODAM	NM_017855	human	genbank	54_36p	1	validated	missense	c.460	p.W154G	0.99	NULL	-	-	no_errors
ITK	3702	genome.wustl.edu	36	5	156570954	156570954	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	5	156570954	156570954	G	C	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	missense	c.322	p.E108Q	1	HMMPfam_PH	SH2;HMMPfam_SH2;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SH3_1;HMMPfam_SH3_1;BTK;HMMPfam_BTK;PH;HMMPfam_PH	-	no_errors
GABRA1	2554	genome.wustl.edu	36	5	161250636	161250636	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	5	161250636	161250636	T	A	SNP	GABRA1	NM_000806	human	genbank	54_36p	1	reviewed	splice_site	c.856+2	e7+2	1	-	-	-	no_errors
SLIT3	6586	genome.wustl.edu	36	5	168145503	168145503	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	5	168145503	168145503	A	T	SNP	SLIT3	NM_003062	human	genbank	54_36p	-1	validated	missense	c.1138	p.S380T	1	NULL	-	-	no_errors
RNF130	55819	genome.wustl.edu	36	5	179337838	179337838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	5	179337838	179337838	C	G	SNP	RNF130	NM_018434	human	genbank	54_36p	-1	reviewed	missense	c.819	p.Q273H	1	NULL	-	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	89960995	89960995	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	5	89960995	89960995	C	G	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.1722	p.I574M	1	NULL	HMMPfam_GPS;HMMPfam_Calx-beta;HMMPfam_EPTP;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Phosphoglucomutase first 3 domains	-	no_errors
C6orf192	116843	genome.wustl.edu	36	6	133142141	133142141	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	6	133142141	133142141	C	G	SNP	C6orf192	NM_052831	human	genbank	54_36p	-1	validated	missense	c.754	p.G252R	1	NULL	-	-	no_errors
JARID2	3720	genome.wustl.edu	36	6	15595579	15595579	+	Nonsense_Mutation	SNP	G	G	T		Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	6	15595579	15595579	G	T	SNP	JARID2	NM_004973	human	genbank	54_36p	1	reviewed	nonsense	c.733	p.E245*	1	NULL	HMMPfam_ARID,HMMPfam_JmjN,HMMPfam_zf-C5HC2,HMMPfam_JmjC,superfamily_ARID-like,superfamily_RING/U-box	-	no_errors
RSPO2	340419	genome.wustl.edu	36	8	109039658	109039658	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	8	109039658	109039658	C	T	SNP	RSPO2	NM_178565	human	genbank	54_36p	-1	validated	missense	c.442	p.G148S	1	NULL	superfamily_Growth factor receptor domain;superfamily_TSP-1 type 1 repeat	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139233226	139233226	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	8	139233226	139233226	T	C	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	missense	c.2674	p.R892G		NULL	-	-	no_errors
ASH2L	9070	genome.wustl.edu	36	8	38083730	38083730	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	8	38083730	38083730	C	G	SNP	ASH2L	NM_004674	human	genbank	54_36p	1	validated	missense	c.290	p.T97S	0.99	NULL	HMMPfam_SPRY	-	no_errors
SLCO5A1	81796	genome.wustl.edu	36	8	70836541	70836541	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	8	70836541	70836541	A	G	SNP	SLCO5A1	NM_030958	human	genbank	54_36p	-1	reviewed	missense	c.1031	p.I344T	1	HMMPfam_OATP	HMMPfam_OATP;HMMPfam_Kazal_2;superfamily_Kazal-type serine protease inhibitors;superfamily_MFS general substrate transporter	-	no_errors
MAGEH1	28986	genome.wustl.edu	36	X	55496032	55496032	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	X	55496032	55496032	C	T	SNP	MAGEH1	NM_014061	human	genbank	54_36p	1	reviewed	missense	c.500	p.A167V	0.95	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
NLGN3	54413	genome.wustl.edu	36	X	70304178	70304178	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	X	70304178	70304178	C	G	SNP	NLGN3	NM_018977	human	genbank	54_36p	1	validated	nonsense	c.1446	p.Y482*	1	HMMPfam_COesterase	HMMPfam_COesterase;superfamily_alpha/beta-Hydrolases	-	no_errors
MFAP3L	9848	genome.wustl.edu	36	4	171163500	171163525	+	In_Frame_Del	DEL	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	GTTAGTTA		Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	GTTAGTTA	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f48ed68f-a833-4b78-971a-3c746c563d24	79248f7f-c436-4ccd-9859-2f5676e0c942	4	171163500	171163525	GTGCTGTTAGTCACACTCTTAGCGGT	GTTAGTTA	DEL	MFAP3L	NM_021647	human	genbank	54_36p	-1	validated	in_frame_del	c.104_84	p.KSVTNST29in_frame_del	1.000:1.000:1.000:0.998:0.944:0.668:0.633:0.579:0.285:0.317:0.303:0.216:0.167:0.080:0.025:0.015:0.010:0.004:0.006:0.020:0.160	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	(deletion:cds_exon[171163306,171163603])	no_errors
