Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
AADACL4	343066	broad.mit.edu	36	1	12648632	12648632	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
RPE65	6121	broad.mit.edu	36	1	68677271	68677271	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
PTGFR	5737	broad.mit.edu	36	1	78731443	78731443	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ODF2L	57489	broad.mit.edu	36	1	86594815	86594815	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ABCA4	24	broad.mit.edu	36	1	94294785	94294785	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
LBR	3930	broad.mit.edu	36	1	223664643	223664643	+	Silent	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
CUBN	8029	broad.mit.edu	36	10	17182224	17182224	+	Silent	SNP	A	A	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
MYPN	84665	broad.mit.edu	36	10	69625251	69625251	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
PACS1	55690	broad.mit.edu	36	11	65594709	65594709	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
SERPINH1	871	broad.mit.edu	36	11	74955282	74955282	+	Silent	SNP	C	C	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
FAT3	120114	broad.mit.edu	36	11	91726643	91726643	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
WNK1	65125	broad.mit.edu	36	12	809542	809542	+	Silent	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
H2AFJ	55766	broad.mit.edu	36	12	14818950	14818950	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
STK38L	23012	broad.mit.edu	36	12	27362215	27362215	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
CEP290	80184	broad.mit.edu	36	12	86989785	86989785	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
MYH7	4625	broad.mit.edu	36	14	22971763	22971763	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
DLK1	8788	broad.mit.edu	36	14	100270974	100270974	+	Silent	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
THBS1	7057	broad.mit.edu	36	15	37663834	37663834	+	Silent	SNP	T	T	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TTBK2	146057	broad.mit.edu	36	15	40832482	40832482	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
IL4R	3566	broad.mit.edu	36	16	27281903	27281903	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TUBB3	10381	broad.mit.edu	36	16	88527464	88527464	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
YWHAE	7531	broad.mit.edu	36	17	1250112	1250112	+	Nonsense_Mutation	SNP	C	C	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TP53	7157	broad.mit.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TNS4	84951	broad.mit.edu	36	17	35889572	35889572	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
WFIKKN2	124857	broad.mit.edu	36	17	46272336	46272336	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
COX11	1353	broad.mit.edu	36	17	50400990	50400990	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TTYH2	94015	broad.mit.edu	36	17	69758052	69758052	+	Silent	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
KIAA0802	23255	broad.mit.edu	36	18	8815314	8815314	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
LAMA3	3909	broad.mit.edu	36	18	19673834	19673834	+	Silent	SNP	C	C	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
MUC16	94025	broad.mit.edu	36	19	8944768	8944768	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ILF3	3609	broad.mit.edu	36	19	10654341	10654341	+	Silent	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
PRODH2	58510	broad.mit.edu	36	19	40994993	40994993	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TEX101	83639	broad.mit.edu	36	19	48612233	48612233	+	Silent	SNP	A	A	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ZNF610	162963	broad.mit.edu	36	19	57561365	57561365	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ZSCAN1	284312	broad.mit.edu	36	19	63255711	63255711	+	Silent	SNP	A	A	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ETAA1	54465	broad.mit.edu	36	2	67485207	67485207	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
CNGA3	1261	broad.mit.edu	36	2	98380026	98380026	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
LYG2	254773	broad.mit.edu	36	2	99228301	99228301	+	Silent	SNP	A	A	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TANC1	85461	broad.mit.edu	36	2	159794435	159794435	+	Nonsense_Mutation	SNP	A	A	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
DYTN	391475	broad.mit.edu	36	2	207224851	207224851	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
SLC4A11	83959	broad.mit.edu	36	20	3163474	3163474	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
WFDC5	149708	broad.mit.edu	36	20	43172775	43172775	+	Silent	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
STAU1	6780	broad.mit.edu	36	20	47169963	47169963	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
GNAS	2778	broad.mit.edu	36	20	56913889	56913889	+	Nonsense_Mutation	SNP	C	C	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
GGT5	2687	broad.mit.edu	36	22	22952670	22952670	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
WNT7A	7476	broad.mit.edu	36	3	13835897	13835897	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
CAPN7	23473	broad.mit.edu	36	3	15257122	15257122	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
DNAH1	25981	broad.mit.edu	36	3	52405674	52405674	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
HSPBAP1	79663	broad.mit.edu	36	3	123970328	123970328	+	Silent	SNP	T	T	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
C3orf59	151963	broad.mit.edu	36	3	193999044	193999044	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
IL7R	3575	broad.mit.edu	36	5	35896794	35896794	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ERBB2IP	55914	broad.mit.edu	36	5	65352971	65352971	+	Splice_Site	SNP	T	T	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
PJA2	9867	broad.mit.edu	36	5	108745197	108745197	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
PCDHB5	26167	broad.mit.edu	36	5	140495805	140495805	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
HTR4	3360	broad.mit.edu	36	5	147869419	147869419	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
BAT2	7916	broad.mit.edu	36	6	31711457	31711457	+	Silent	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ASCC3	10973	broad.mit.edu	36	6	101354981	101354981	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
KIAA1919	91749	broad.mit.edu	36	6	111691771	111691771	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
FSCN1	6624	broad.mit.edu	36	7	5610090	5610090	+	Silent	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
DLX6	1750	broad.mit.edu	36	7	96474989	96474989	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
TRPV5	56302	broad.mit.edu	36	7	142332804	142332804	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
WDR60	55112	broad.mit.edu	36	7	158365361	158365361	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ADAMTSL1	92949	broad.mit.edu	36	9	18766831	18766831	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
COL5A1	1289	broad.mit.edu	36	9	136799012	136799012	+	Silent	SNP	A	A	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
POLA1	5422	broad.mit.edu	36	X	24737953	24737953	+	Silent	SNP	A	A	G	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
CLCN5	1184	broad.mit.edu	36	X	49743532	49743532	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
FGD1	2245	broad.mit.edu	36	X	54498936	54498936	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
FAM123B	139285	broad.mit.edu	36	X	63326799	63326799	+	Silent	SNP	G	G	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ACRC	93953	broad.mit.edu	36	X	70745675	70745675	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
PAK3	5063	broad.mit.edu	36	X	110324209	110324209	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
IGSF1	3547	broad.mit.edu	36	X	130244862	130244862	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
GPR37L1	9283	broad.mit.edu	36	1	200363835	200363843	+	In_Frame_Del	DEL	CAGTCACCT	-	CAGTCACCT	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	CAGTCACCT	CAGTCACCT	-	-	CAGTCACCT	CAGTCACCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
PRKCQ	5588	broad.mit.edu	36	10	6565544	6565562	+	Frame_Shift_Del	DEL	GACTCCCAGGAAATGCCCT	-	GACTCCCAGGAAATGCCCT	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	GACTCCCAGGAAATGCCCT	GACTCCCAGGAAATGCCCT	-	-	GACTCCCAGGAAATGCCCT	GACTCCCAGGAAATGCCCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
OR6X1	390260	broad.mit.edu	36	11	123130340	123130340	+	Frame_Shift_Del	DEL	A	-	-	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
FOXJ2	55810	broad.mit.edu	36	12	8083874	8083881	+	Frame_Shift_Del	DEL	CAGTGCAC	-	CAGTGCAC	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	CAGTGCAC	CAGTGCAC	-	-	CAGTGCAC	CAGTGCAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
KIAA1409	57578	broad.mit.edu	36	14	93116303	93116353	+	In_Frame_Del	DEL	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	-	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	-	-	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
MUC16	94025	broad.mit.edu	36	19	8949834	8949848	+	In_Frame_Del	DEL	GCAGAGAGAGAAGTG	-	GCAGAGAGAGAAGTG	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	GCAGAGAGAGAAGTG	GCAGAGAGAGAAGTG	-	-	GCAGAGAGAGAAGTG	GCAGAGAGAGAAGTG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ASNA1	439	broad.mit.edu	36	19	12717512	12717523	+	In_Frame_Del	DEL	TGGAGCGGGGCC	-	TGGAGCGGGGCC	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	TGGAGCGGGGCC	TGGAGCGGGGCC	-	-	TGGAGCGGGGCC	TGGAGCGGGGCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
MYO3B	140469	broad.mit.edu	36	2	170948469	170948498	+	In_Frame_Del	DEL	TCCAGACTTTATCATGGGGTGAAACGCGCC	-	TCCAGACTTTATCATGGGGTGAAACGCGCC	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	TCCAGACTTTATCATGGGGTGAAACGCGCC	TCCAGACTTTATCATGGGGTGAAACGCGCC	-	-	TCCAGACTTTATCATGGGGTGAAACGCGCC	TCCAGACTTTATCATGGGGTGAAACGCGCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
DCAF4L2	138009	broad.mit.edu	36	8	88955315	88955320	+	Translation_Start_Site	DEL	TTTCGT	-	TTTCGT	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	TTTCGT	TTTCGT	-	-	TTTCGT	TTTCGT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
ARMCX2	9823	broad.mit.edu	36	X	100798262	100798284	+	Frame_Shift_Del	DEL	GGCTGCAGCAGCTGCTGCAGCCC	-	GGCTGCAGCAGCTGCTGCAGCCC	novel	none	TCGA-13-0913-01A-01W-0420-08	TCGA-13-0913-10A-01D-0399-08	GGCTGCAGCAGCTGCTGCAGCCC	GGCTGCAGCAGCTGCTGCAGCCC	-	-	GGCTGCAGCAGCTGCTGCAGCCC	GGCTGCAGCAGCTGCTGCAGCCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	d2d97613-b6e5-439f-8a94-f6a7b0527bb0	279308ab-f861-4610-861c-101455a72c83
