Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
DNAJC11	55735	broad.mit.edu	36	1	6619976	6619976	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ALPL	249	broad.mit.edu	36	1	21762289	21762289	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
FAM183A	440585	broad.mit.edu	36	1	43394541	43394541	+	Silent	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
RCOR3	55758	broad.mit.edu	36	1	209552736	209552736	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
USH2A	7399	broad.mit.edu	36	1	213874577	213874577	+	Silent	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
MYO3A	53904	broad.mit.edu	36	10	26355327	26355327	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
UNC5B	219699	broad.mit.edu	36	10	72716536	72716536	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
HABP2	3026	broad.mit.edu	36	10	115327852	115327852	+	Missense_Mutation	SNP	T	T	G	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
OR51Q1	390061	broad.mit.edu	36	11	5400269	5400269	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
FSHB	2488	broad.mit.edu	36	11	30210097	30210097	+	Silent	SNP	C	C	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
QSER1	79832	broad.mit.edu	36	11	32912214	32912214	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
OR8K1	390157	broad.mit.edu	36	11	55870397	55870397	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
DPF2	5977	broad.mit.edu	36	11	64865046	64865046	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
PUS3	83480	broad.mit.edu	36	11	125270366	125270366	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
CCNT1	904	broad.mit.edu	36	12	47374193	47374193	+	Silent	SNP	A	A	C	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
DIP2B	57609	broad.mit.edu	36	12	49378405	49378405	+	Silent	SNP	A	A	G	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
FRY	10129	broad.mit.edu	36	13	31550987	31550987	+	Silent	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
C14orf43	91748	broad.mit.edu	36	14	73276041	73276041	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
NTRK3	4916	broad.mit.edu	36	15	86284908	86284908	+	Nonsense_Mutation	SNP	C	C	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
CDH8	1006	broad.mit.edu	36	16	60245476	60245476	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ZFHX3	463	broad.mit.edu	36	16	71380038	71380038	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ANKRD11	29123	broad.mit.edu	36	16	87879044	87879044	+	Silent	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
TP53	7157	broad.mit.edu	36	17	7518223	7518223	+	Splice_Site	SNP	C	C	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA;Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ZNF257	113835	broad.mit.edu	36	19	22062936	22062936	+	Missense_Mutation	SNP	T	T	C	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
FAM83E	54854	broad.mit.edu	36	19	53808235	53808235	+	Silent	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ZSWIM2	151112	broad.mit.edu	36	2	187421961	187421961	+	Nonsense_Mutation	SNP	C	C	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
COL4A3	1285	broad.mit.edu	36	2	227855409	227855409	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
SP100	6672	broad.mit.edu	36	2	231017272	231017272	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
KIF16B	55614	broad.mit.edu	36	20	16444271	16444271	+	Silent	SNP	T	T	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
PLXNB2	23654	broad.mit.edu	36	22	49066380	49066380	+	Silent	SNP	C	C	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
PLXNB2	23654	broad.mit.edu	36	22	49066760	49066760	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
BSN	8927	broad.mit.edu	36	3	49655338	49655338	+	Nonsense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
MON1A	84315	broad.mit.edu	36	3	49922959	49922959	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ROPN1	54763	broad.mit.edu	36	3	125178457	125178457	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
EIF2B5	8893	broad.mit.edu	36	3	185343300	185343300	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ADH5	128	broad.mit.edu	36	4	100212611	100212611	+	Nonsense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
CXXC4	80319	broad.mit.edu	36	4	105631754	105631754	+	Missense_Mutation	SNP	A	A	G	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
CDH6	1004	broad.mit.edu	36	5	31335411	31335411	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
PRLR	5618	broad.mit.edu	36	5	35106079	35106079	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
SPZ1	84654	broad.mit.edu	36	5	79652841	79652841	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
GEMIN5	25929	broad.mit.edu	36	5	154259047	154259047	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
RNF145	153830	broad.mit.edu	36	5	158520861	158520861	+	Silent	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
PGBD1	84547	broad.mit.edu	36	6	28372645	28372645	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
DDO	8528	broad.mit.edu	36	6	110836235	110836235	+	Silent	SNP	T	T	C	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
PPP1R3A	5506	broad.mit.edu	36	7	113305739	113305739	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
ANK1	286	broad.mit.edu	36	8	41734807	41734807	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
CSMD3	114788	broad.mit.edu	36	8	113461831	113461831	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
GPKOW	27238	broad.mit.edu	36	X	48863011	48863011	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
BRCC3	79184	broad.mit.edu	36	X	153953096	153953096	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1409-01A-01W-0492-08	TCGA-13-1409-10A-01W-0493-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	190a2803-8e25-4b87-8f7b-192e8923965e	97d5fc6e-f5d2-4581-ac75-809d6492016c
