Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
PLCH2	9651	broad.mit.edu	36	1	2410548	2410548	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
CRNN	49860	broad.mit.edu	36	1	150649344	150649344	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
NTRK1	4914	broad.mit.edu	36	1	155112836	155112836	+	Silent	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
ANXA7	310	broad.mit.edu	36	10	74826311	74826311	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
LCOR	84458	broad.mit.edu	36	10	98698842	98698842	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
RRP12	23223	broad.mit.edu	36	10	99140562	99140562	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
CRTAC1	55118	broad.mit.edu	36	10	99657889	99657889	+	Nonsense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
PPRC1	23082	broad.mit.edu	36	10	103887617	103887617	+	Silent	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
OBFC1	79991	broad.mit.edu	36	10	105638857	105638857	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
C11orf41	25758	broad.mit.edu	36	11	33523082	33523082	+	Silent	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
XRRA1	143570	broad.mit.edu	36	11	74233764	74233764	+	Splice_Site	SNP	A	A	G	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
SLC37A2	219855	broad.mit.edu	36	11	124455789	124455789	+	Silent	SNP	C	C	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
LRFN5	145581	broad.mit.edu	36	14	41426911	41426911	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
KCNH5	27133	broad.mit.edu	36	14	62244875	62244875	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
CES3	23491	broad.mit.edu	36	16	65558234	65558234	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
TAT	6898	broad.mit.edu	36	16	70161677	70161677	+	Missense_Mutation	SNP	A	A	C	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
TP53	7157	broad.mit.edu	36	17	7518306	7518306	+	Missense_Mutation	SNP	A	A	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
ZPBP2	124626	broad.mit.edu	36	17	35282836	35282836	+	Silent	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
SEPT9	10801	broad.mit.edu	36	17	72995966	72995966	+	Silent	SNP	A	A	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
MBD3	53615	broad.mit.edu	36	19	1529479	1529479	+	Missense_Mutation	SNP	C	C	G	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
ZNF77	58492	broad.mit.edu	36	19	2884602	2884602	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
NDUFB7	4713	broad.mit.edu	36	19	14538058	14538058	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
USP29	57663	broad.mit.edu	36	19	62332686	62332686	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
FZD5	7855	broad.mit.edu	36	2	208340364	208340364	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
C2orf67	151050	broad.mit.edu	36	2	210648569	210648569	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
WNT6	7475	broad.mit.edu	36	2	219446779	219446779	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
COL6A3	1293	broad.mit.edu	36	2	237914270	237914270	+	Missense_Mutation	SNP	G	G	C	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
CASS4	57091	broad.mit.edu	36	20	54466892	54466892	+	Silent	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
HHLA2	11148	broad.mit.edu	36	3	109559411	109559411	+	Missense_Mutation	SNP	T	T	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
FTMT	94033	broad.mit.edu	36	5	121215735	121215735	+	Missense_Mutation	SNP	G	G	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
ARAP3	64411	broad.mit.edu	36	5	141032024	141032024	+	Nonsense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
SYNGAP1	8831	broad.mit.edu	36	6	33519227	33519227	+	Missense_Mutation	SNP	G	G	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
TFAP2D	83741	broad.mit.edu	36	6	50804949	50804949	+	Missense_Mutation	SNP	C	C	A	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
SHPRH	257218	broad.mit.edu	36	6	146306061	146306061	+	Missense_Mutation	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
TRRAP	8295	broad.mit.edu	36	7	98411725	98411725	+	Silent	SNP	C	C	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
PTCHD1	139411	broad.mit.edu	36	X	23321698	23321698	+	Silent	SNP	G	G	T	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
DDX12	440081	broad.mit.edu	36	12	9481918	9481919	+	In_Frame_Ins	INS	-	CTGAGTAAC	-	novel	none	TCGA-13-1484-01A-01W-0545-08	TCGA-13-1484-10A-01W-0545-08	-	-	CTGAGTAAC	CTGAGTAAC	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	379ee54e-fe99-4051-87bc-ecb12a55616d	1a26bbf3-b968-4d45-9c86-3d9c8fd31947
