Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
CRNN	49860	genome.wustl.edu	36	1	150650016	150650016	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	1	150650016	150650016	C	T	SNP	CRNN	NM_016190	human	genbank	54_36p	-1	reviewed	missense	c.166	p.E56K	0.98	NULL	-	-	no_errors
IFI16	3428	genome.wustl.edu	36	1	157290096	157290096	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	1	157290096	157290096	G	A	SNP	IFI16	NM_005531	human	genbank	54_36p	1	reviewed	silent	c.2067	p.G689		NULL	-	-	no_errors
MPZL1	9019	genome.wustl.edu	36	1	166001554	166001554	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	1	166001554	166001554	G	A	SNP	MPZL1	NM_003953	human	genbank	54_36p	1	validated	missense	c.202	p.G68R	0.16	HMMPfam_V-set	HMMPfam_V-set;superfamily_Immunoglobulin	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180811317	180811317	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	1	180811317	180811317	C	T	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.2059	p.D687N	0.23	NULL	-	-	no_errors
GBP2	2634	genome.wustl.edu	36	1	89358540	89358540	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	1	89358540	89358540	G	A	SNP	GBP2	NM_004120	human	genbank	54_36p	-1	reviewed	missense	c.338	p.S113F	1	HMMPfam_GBP	HMMPfam_GBP_C;HMMPfam_GBP;superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SVIL	6840	genome.wustl.edu	36	10	29799398	29799398	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	10	29799398	29799398	C	T	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.5656	p.V1886M	1	NULL	HMMPfam_VHP,superfamily_VHP Villin headpiece domain,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65028263	65028264	+	RNA	INS	-	-	GA	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	-	-	-	GA	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	11	65028263	65028264	-	GA	INS	MALAT1	NR_002819	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.996:1.000	-	-	-	no_errors
PELI3	246330	genome.wustl.edu	36	11	65997320	65997320	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	11	65997320	65997320	C	T	SNP	PELI3	NM_145065	human	genbank	54_36p	1	validated	silent	c.489	p.F163	0.92	HMMPfam_Pellino	HMMPfam_Pellino;superfamily_RING/U-box	-	no_errors
CCDC63	160762	genome.wustl.edu	36	12	109780780	109780780	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	12	109780780	109780780	A	C	SNP	CCDC63	NM_152591	human	genbank	54_36p	1	provisional	missense	c.187	p.I63L	0.27	NULL	-	-	no_errors
ZMYM2	7750	genome.wustl.edu	36	13	19539011	19539011	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	13	19539011	19539011	A	G	SNP	ZMYM2	NM_003453	human	genbank	54_36p	1	validated	silent	c.3153	p.V1051	1	NULL	superfamily_Ferritin-like;HMMPfam_zf-MYM;superfamily_RING/U-box	-	no_errors
UFM1	51569	genome.wustl.edu	36	13	37826430	37826441	+	Frame_Shift_Del	DEL	AGAAGTAAGTAC	AGAAGTAAGTAC	-	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	AGAAGTAAGTAC	AGAAGTAAGTAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	13	37826430	37826441	AGAAGTAAGTAC	-	DEL	UFM1	NM_016617	human	genbank	54_36p	1	validated	frame_shift_del	c.114_117	p.E38fs	1.000:1.000:1.000:1.000	HMMPfam_UPF0185	HMMPfam_UPF0185;superfamily_Ubiquitin-like	(deletion:cds_exon[37826376;37826433]; intron[37826434;37830229])	no_errors
CHD8	57680	genome.wustl.edu	36	14	20940373	20940373	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	14	20940373	20940373	G	C	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.3007	p.L1003V	0.99	NULL	HMMPfam_SNF2_N;HMMPfam_Chromo;HMMPfam_Helicase_C;HMMPfam_TCH;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Chromo domain-like	-	no_errors
FOXN3	1112	genome.wustl.edu	36	14	88698683	88698683	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	14	88698683	88698683	G	A	SNP	FOXN3	NM_001085471	human	genbank	54_36p	-1	reviewed	missense	c.1301	p.T434I	1	NULL	-	-	no_errors
IL16	3603	genome.wustl.edu	36	15	79372265	79372265	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	15	79372265	79372265	G	A	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	silent	c.1734	p.P578		NULL	-	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23623881	23623881	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	16	23623881	23623881	G	A	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	silent	c.822	p.G274	1	NULL	HMMPfam_Pkinase,HMMPfam_PQQ,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517839	7517839	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	17	7517839	7517839	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.824	p.C275Y	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75964828	75964828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	17	75964828	75964828	G	A	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.7537	p.D2513N		NULL	HMMPfam_zf-C3HC4;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Nickel-iron hydrogenase small subunit;superfamily_RING/U-box	-	no_errors
DSG1	1828	genome.wustl.edu	36	18	27167633	27167633	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	18	27167633	27167633	C	A	SNP	DSG1	NM_001942	human	genbank	54_36p	1	reviewed	missense	c.768	p.N256K	0.15	HMMPfam_Cadherin	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
ZNF407	55628	genome.wustl.edu	36	18	70718207	70718207	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	18	70718207	70718207	A	T	SNP	ZNF407	NM_017757	human	genbank	54_36p	1	provisional	missense	c.4944	p.K1648N	1	NULL	-	-	no_errors
C19orf62	29086	genome.wustl.edu	36	19	17243464	17243464	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	19	17243464	17243464	G	T	SNP	C19orf62	NM_001033549	human	genbank	54_36p	1	validated	missense	c.344	p.G115V	1	NULL	superfamily_vWA-like	-	no_errors
CLPP	8192	genome.wustl.edu	36	19	6319570	6319570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	19	6319570	6319570	G	A	SNP	CLPP	NM_006012	human	genbank	54_36p	1	reviewed	missense	c.683	p.R228H	1	NULL	-	-	no_errors
EHBP1	23301	genome.wustl.edu	36	2	62955168	62955168	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	2	62955168	62955168	T	C	SNP	EHBP1	NM_015252	human	genbank	54_36p	1	validated	silent	c.1287	p.P429	0.98	NULL	-	-	no_errors
TPTE	7179	genome.wustl.edu	36	21	9955923	9955923	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	21	9955923	9955923	C	T	SNP	TPTE	NM_199261	human	genbank	54_36p	-1	validated	missense	c.925	p.V309I	1	NULL	-	-	no_errors
SCUBE1	80274	genome.wustl.edu	36	22	41944370	41944370	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	22	41944370	41944370	G	A	SNP	SCUBE1	NM_173050	human	genbank	54_36p	-1	validated	nonsense	c.1726	p.Q576*	1	NULL	HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_EGF;superfamily_Growth factor receptor domain;HMMPfam_GCC2_GCC3;HMMPfam_EGF_CA;superfamily_EGF/Laminin	-	no_errors
GRAMD4	23151	genome.wustl.edu	36	22	45401479	45401479	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	22	45401479	45401479	T	A	SNP	GRAMD4	NM_015124	human	genbank	54_36p	1	validated	missense	c.119	p.V40E	0.26	NULL	HMMPfam_GRAM	-	no_errors
LOC100133224	100133224	genome.wustl.edu	36	22	29882241	29882241	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	22	29882241	29882241	C	T	SNP	LOC100133224	XM_001716151	human	genbank	54_36p	-1	model	missense	c.826	p.V276I	0.99	NULL	-	-	no_errors
LOC131054	131054	genome.wustl.edu	36	3	181523902	181523902	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	3	181523902	181523902	G	T	SNP	LOC131054	XR_017452	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CTNNB1	1499	genome.wustl.edu	36	3	41241891	41241891	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	3	41241891	41241891	C	T	SNP	CTNNB1	NM_001098209	human	genbank	54_36p	1	validated	silent	c.558	p.H186	0.99	NULL	-	-	no_errors
RASSF1	11186	genome.wustl.edu	36	3	50343846	50343846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	3	50343846	50343846	G	A	SNP	RASSF1	NM_170714	human	genbank	54_36p	-1	reviewed	missense	c.811	p.R271W	0.177	HMMPfam_RA	HMMPfam_RA,HMMPfam_C1_1,superfamily_Cysteine-rich domain	-	no_errors
ROBO1	6091	genome.wustl.edu	36	3	78767801	78767801	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	3	78767801	78767801	C	T	SNP	ROBO1	NM_002941	human	genbank	54_36p	-1	reviewed	missense	c.3185	p.R1062H	1	NULL	fn3;HMMPfam_fn3;I-set;HMMPfam_I-set	-	no_errors
ADD1	118	genome.wustl.edu	36	4	2886435	2886435	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	4	2886435	2886435	C	T	SNP	ADD1	NM_014189	human	genbank	54_36p	1	reviewed	silent	c.1725	p.A575	1	NULL	-	-	no_errors
ANKRD17	26057	genome.wustl.edu	36	4	74175270	74175270	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	4	74175270	74175270	C	G	SNP	ANKRD17	NM_032217	human	genbank	54_36p	-1	reviewed	missense	c.6939	p.Q2313H	1	NULL	HMMPfam_MutS_V,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
SLC12A2	6558	genome.wustl.edu	36	5	127514866	127514866	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	5	127514866	127514866	G	T	SNP	SLC12A2	NM_001046	human	genbank	54_36p	1	validated	missense	c.2142	p.W714C	1	NULL	-	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13903804	13903804	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	5	13903804	13903804	G	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.5071	p.H1691N	1	NULL	-	-	no_errors
CDH18	1016	genome.wustl.edu	36	5	19607578	19607578	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	5	19607578	19607578	C	A	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	missense	c.1120	p.V374F	1	NULL	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
CDH6	1004	genome.wustl.edu	36	5	31359020	31359020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	5	31359020	31359020	G	A	SNP	CDH6	NM_004932	human	genbank	54_36p	1	reviewed	missense	c.2221	p.E741K	1	HMMPfam_Cadherin_C	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
RGNEF	64283	genome.wustl.edu	36	5	73105497	73105497	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	5	73105497	73105497	C	T	SNP	RGNEF	NM_001080479	human	genbank	54_36p	1	provisional	silent	c.537	p.S179	0.99	NULL	-	-	no_errors
ADCY2	108	genome.wustl.edu	36	5	7765987	7765987	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	5	7765987	7765987	C	G	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	missense	c.1597	p.H533D	1	NULL	-	-	no_errors
HLA-G	3135	genome.wustl.edu	36	6	29905345	29905345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	6	29905345	29905345	C	T	SNP	HLA-G	NM_002127	human	genbank	54_36p	1	reviewed	missense	c.791	p.T264I	1	NULL	-	-	no_errors
SRRT	51593	genome.wustl.edu	36	7	100323649	100323649	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	7	100323649	100323649	C	A	SNP	SRRT	NM_015908	human	genbank	54_36p	1	validated	missense	c.2377	p.Q793K	1	NULL	-	-	no_errors
C7orf60	154743	genome.wustl.edu	36	7	112322977	112322977	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	7	112322977	112322977	T	A	SNP	C7orf60	NM_152556	human	genbank	54_36p	-1	validated	missense	c.356	p.D119V	1	NULL	-	-	no_errors
GPR85	54329	genome.wustl.edu	36	7	112511041	112511041	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	7	112511041	112511041	A	G	SNP	GPR85	NM_018970	human	genbank	54_36p	-1	validated	silent	c.972	p.A324	1	NULL	-	-	no_errors
uc003vym.2	0	genome.wustl.edu	36	7	141819621	141819621	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	7	141819621	141819621	C	A	SNP	uc003vym.2	ENST00000390368	human	ensembl	54_36p	1	known	missense	c.52	p.P18T		NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
DNAH11	8701	genome.wustl.edu	36	7	21872754	21872754	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	7	21872754	21872754	A	C	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.11659	p.K3887Q	1	HMMPfam_Dynein_heavy	HMMPfam_Dynein_heavy;superfamily_HR1 repeat;HMMPfam_AAA_5;HMMPfam_DHC_N1;HMMPfam_DHC_N2;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DYNC1I1	1780	genome.wustl.edu	36	7	95280548	95280548	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	7	95280548	95280548	G	T	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	1	validated	nonsense	c.328	p.G110*	1	NULL	HMMPfam_WD40;superfamily_WD40 repeat-like	-	no_errors
LOC648603	648603	genome.wustl.edu	36	X	48519176	48519176	+	RNA	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	X	48519176	48519176	G	A	SNP	LOC648603	XR_038238	human	genbank	54_36p	-1	model	rna	NULL	NULL		-	-	-	pseudogene
TGIF2LX	90316	genome.wustl.edu	36	X	89063758	89063758	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	fb7d1c2b-3e87-4d05-a58b-92d0e1016986	95848a3e-2292-4a0a-ace2-683e70709a56	X	89063758	89063758	C	T	SNP	TGIF2LX	NM_138960	human	genbank	54_36p	1	reviewed	silent	c.18	p.D6		NULL	-	-	no_errors
