Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
REG4	83998	genome.wustl.edu	36	1	120138772	120138772	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	120138772	120138772	G	A	SNP	REG4	NM_032044	human	genbank	54_36p	-1	validated	nonsense	c.469	p.R157*	0.02	NULL	HMMPfam_Lectin_C;superfamily_C-type lectin-like	-	no_errors
BCL9	607	genome.wustl.edu	36	1	145559255	145559255	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	145559255	145559255	G	T	SNP	BCL9	NM_004326	human	genbank	54_36p	1	reviewed	silent	c.2670	p.S890	0.97	NULL	-	-	no_errors
RFX5	5993	genome.wustl.edu	36	1	149581309	149581309	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	149581309	149581309	C	T	SNP	RFX5	NM_000449	human	genbank	54_36p	-1	reviewed	missense	c.1828	p.D610N	1	NULL	-	-	no_errors
NPR1	4881	genome.wustl.edu	36	1	151926302	151926302	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	151926302	151926302	C	A	SNP	NPR1	NM_000906	human	genbank	54_36p	1	validated	silent	c.1938	p.G646	0.76	HMMPfam_Pkinase_Tyr	HMMPfam_Guanylate_cyc;HMMPfam_Pkinase_Tyr;HMMPfam_ANF_receptor;superfamily_Protein kinase-like (PK-like);superfamily_Periplasmic binding protein-like I;superfamily_Adenylyl and guanylyl cyclase catalytic domain	-	no_errors
NTRK1	4914	genome.wustl.edu	36	1	155115634	155115634	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	155115634	155115634	C	T	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	silent	c.1902	p.V634	0.99	HMMPfam_Pkinase_Tyr	Pkinase_Tyr;HMMPfam_Pkinase_Tyr;LRR_1;HMMPfam_LRR_1	-	no_errors
KIRREL	55243	genome.wustl.edu	36	1	156327870	156327870	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	156327870	156327870	C	T	SNP	KIRREL	NM_018240	human	genbank	54_36p	1	validated	silent	c.879	p.T293	1	NULL	-	-	no_errors
CD1B	910	genome.wustl.edu	36	1	156565786	156565786	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	156565786	156565786	C	A	SNP	CD1B	NM_001764	human	genbank	54_36p	-1	reviewed	missense	c.884	p.W295L	0.99	NULL	HMMPfam_C1-set;superfamily_MHC antigen-recognition domain;superfamily_Immunoglobulin	-	no_errors
TEDDM1	127670	genome.wustl.edu	36	1	180635977	180635977	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	180635977	180635977	C	G	SNP	TEDDM1	NM_172000	human	genbank	54_36p	-1	validated	missense	c.267	p.K89N	0.06	NULL	-	-	no_errors
TAS1R2	80834	genome.wustl.edu	36	1	19039080	19039080	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	19039080	19039080	C	T	SNP	TAS1R2	NM_152232	human	genbank	54_36p	-1	validated	missense	c.2120	p.R707H		NULL	-	-	no_errors
NR5A2	2494	genome.wustl.edu	36	1	198356604	198356604	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	198356604	198356604	A	C	SNP	NR5A2	NM_205860	human	genbank	54_36p	1	validated	missense	c.1276	p.N426H	1	HMMPfam_Hormone_recep	superfamily_Nuclear receptor ligand-binding domain;superfamily_Glucocorticoid receptor-like (DNA-binding domain);HMMPfam_Hormone_recep;HMMPfam_zf-C4	-	no_errors
NBL1	4681	genome.wustl.edu	36	1	19854446	19854446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	19854446	19854446	C	T	SNP	NBL1	NM_182744	human	genbank	54_36p	1	reviewed	silent	c.318	p.T106	1	NULL	-	-	no_errors
CACNA1S	779	genome.wustl.edu	36	1	199327481	199327481	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	199327481	199327481	G	A	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	silent	c.604	p.L202	1	HMMPfam_Ion_trans	HMMPfam_Ion_trans;HMMPfam_Ca_chan_IQ;superfamily_EF-hand;superfamily_Voltage-gated potassium channels	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	236031821	236031821	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	236031821	236031821	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	silent	c.14133	p.G4711	1	NULL	HMMPfam_RYDR_ITPR;HMMPfam_efhand;HMMPfam_RyR;HMMPfam_MIR;HMMPfam_SPRY;HMMPfam_Ion_trans;HMMPfam_RR_TM4-6;HMMPfam_RIH_assoc;HMMPfam_Ins145_P3_rec;superfamily_EF-hand;superfamily_MIR domain (Pfam 02815)	-	no_errors
ADSS	159	genome.wustl.edu	36	1	242653964	242653964	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	242653964	242653964	G	T	SNP	ADSS	NM_001126	human	genbank	54_36p	-1	reviewed	silent	c.495	p.G165	0.85	HMMPfam_Adenylsucc_synt	HMMPfam_Adenylsucc_synt;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RPA2	6118	genome.wustl.edu	36	1	28113723	28113723	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	28113723	28113723	A	C	SNP	RPA2	ENST00000373909	human	ensembl	54_36p	-1	known	splice_site	c.34+2	e1+2		-	-	-	no_errors
PTCH2	8643	genome.wustl.edu	36	1	45070287	45070287	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	45070287	45070287	T	A	SNP	PTCH2	NM_003738	human	genbank	54_36p	-1	validated	nonsense	c.472	p.K158*	1	HMMPfam_Patched	Patched;HMMPfam_Patched	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46264028	46264028	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	46264028	46264028	T	A	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	missense	c.1873	p.Y625N	1	NULL	-	-	no_errors
LRRIQ3	127255	genome.wustl.edu	36	1	74279558	74279558	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	74279558	74279558	T	A	SNP	LRRIQ3	NM_001105659	human	genbank	54_36p	-1	inferred	missense	c.1645	p.S549C	0.02	NULL	-	-	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86297400	86297400	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	86297400	86297400	C	A	SNP	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	missense	c.1798	p.G600C	1	NULL	-	-	no_errors
PARD3	56288	genome.wustl.edu	36	10	34660243	34660254	+	In_Frame_Del	DEL	GACCCAGGGAAG	GACCCAGGGAAG	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	GACCCAGGGAAG	GACCCAGGGAAG	GACCCAGGGAAG	-	GACCCAGGGAAG	GACCCAGGGAAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	10	34660243	34660254	GACCCAGGGAAG	-	DEL	PARD3	NM_019619	human	genbank	54_36p	-1	provisional	in_frame_del	c.2650_2639	p.PSLG880in_frame_del	0.997:0.994:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.885:1.000	NULL	HMMPfam_PDZ;superfamily_PDZ domain-like	(deletion:cds_exon[34660051;34660278])	no_errors
ANAPC16	119504	genome.wustl.edu	36	10	73653810	73653810	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	10	73653810	73653810	G	C	SNP	C10orf104	NM_173473	human	genbank	54_36p	1	validated	missense	c.132	p.E44D	1	NULL	-	-	no_errors
CADM1	23705	genome.wustl.edu	36	11	114554637	114554637	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	114554637	114554637	C	A	SNP	CADM1	NM_014333	human	genbank	54_36p	-1	validated	missense	c.1147	p.V383L	1	NULL	HMMPfam_V-set;HMMPfam_ig;HMMPfam_C2-set_2;superfamily_Immunoglobulin	-	no_errors
SCN3B	55800	genome.wustl.edu	36	11	123014126	123014126	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	123014126	123014126	C	T	SNP	SCN3B	NM_001040151	human	genbank	54_36p	-1	reviewed	missense	c.562	p.E188K	0.99	NULL	HMMPfam_V-set;superfamily_Immunoglobulin	-	no_errors
LRRC4C	57689	genome.wustl.edu	36	11	40092829	40092829	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	40092829	40092829	A	T	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	silent	c.1590	p.I530	1	NULL	HMMPfam_LRRNT;HMMPfam_LRR_1;HMMPfam_I-set;superfamily_Immunoglobulin;superfamily_L domain-like	-	no_errors
OR5AK2	390181	genome.wustl.edu	36	11	56513893	56513893	+	Nonstop_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	56513893	56513893	A	C	SNP	OR5AK2	NM_001005323	human	genbank	54_36p	1	provisional	nonstop	c.929	p.*310S		NULL	-	-	no_errors
SYVN1	84447	genome.wustl.edu	36	11	64653850	64653850	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	64653850	64653850	G	A	SNP	SYVN1	NM_172230	human	genbank	54_36p	-1	reviewed	missense	c.1522	p.R508C	1	NULL	HMMPfam_zf-C3HC4;superfamily_RING/U-box	-	no_errors
FCHSD2	9873	genome.wustl.edu	36	11	72231902	72231902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	72231902	72231902	C	T	SNP	FCHSD2	NM_014824	human	genbank	54_36p	-1	validated	silent	c.1479	p.T493	0.81	NULL	-	-	no_errors
OLFML1	283298	genome.wustl.edu	36	11	7466209	7466209	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	7466209	7466209	T	A	SNP	OLFML1	NM_198474	human	genbank	54_36p	1	provisional	silent	c.405	p.T135	0.29	NULL	-	-	no_errors
CEP57	9702	genome.wustl.edu	36	11	95203847	95203847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	95203847	95203847	C	A	SNP	CEP57	NM_014679	human	genbank	54_36p	1	validated	missense	c.1282	p.Q428K	0.99	HMMPfam_DUF1167	HMMPfam_DUF1167;superfamily_Spectrin repeat	-	no_errors
TCP11L2	255394	genome.wustl.edu	36	12	105239497	105239497	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	105239497	105239497	T	C	SNP	TCP11L2	NM_152772	human	genbank	54_36p	1	provisional	missense	c.518	p.V173A	0.97	NULL	-	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128132509	128132509	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	128132509	128132509	C	T	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.1671	p.E557	0.99	NULL	-	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130053283	130053283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	130053283	130053283	C	T	SNP	GPR133	ENST00000376682	human	ensembl	54_36p	1	known	missense	c.32	p.P11L	0	NULL	-	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26455589	26455589	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	26455589	26455589	T	A	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.7330	p.T2444S	0.6	NULL	-	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	37989745	37989745	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	37989745	37989745	C	T	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	missense	c.4148	p.C1383Y	0.95	NULL	-	-	no_errors
SRSF2IP	9169	genome.wustl.edu	36	12	44607946	44607946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	44607946	44607946	G	C	SNP	SFRS2IP	NM_004719	human	genbank	54_36p	-1	validated	missense	c.1805	p.T602R	0.03	NULL	-	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54714800	54714800	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	54714800	54714800	C	G	SNP	IKZF4	NM_022465	human	genbank	54_36p	1	validated	missense	c.1176	p.I392M	1	NULL	-	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	859035	859035	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	859035	859035	C	A	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	silent	c.2409	p.G803	1	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
HAL	3034	genome.wustl.edu	36	12	94894533	94894533	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	12	94894533	94894533	G	A	SNP	HAL	NM_002108	human	genbank	54_36p	-1	reviewed	silent	c.1737	p.V579	1	HMMPfam_PAL	HMMPfam_PAL;superfamily_L-aspartase-like	-	no_errors
SLC10A2	6555	genome.wustl.edu	36	13	102516248	102516248	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	13	102516248	102516248	C	T	SNP	SLC10A2	NM_000452	human	genbank	54_36p	-1	validated	nonsense	c.353	p.W118*	1	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
FAM123A	219287	genome.wustl.edu	36	13	24641799	24641799	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	13	24641799	24641799	G	T	SNP	FAM123A	NM_152704	human	genbank	54_36p	-1	validated	silent	c.1959	p.G653	1	NULL	-	-	no_errors
DCLK1	9201	genome.wustl.edu	36	13	35282981	35282981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	13	35282981	35282981	G	A	SNP	DCLK1	NM_004734	human	genbank	54_36p	-1	validated	missense	c.1679	p.A560V	1	NULL	HMMPfam_Pkinase;HMMPfam_DCX;superfamily_Protein kinase-like (PK-like);superfamily_Doublecortin (DC)	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85158757	85158757	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	14	85158757	85158757	G	A	SNP	FLRT2	NM_013231	human	genbank	54_36p	1	reviewed	silent	c.1146	p.Q382		NULL	HMMPfam_LRRNT;HMMPfam_LRRCT;HMMPfam_LRR_1;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_L domain-like	-	no_errors
MAP1A	4130	genome.wustl.edu	36	15	41607649	41607649	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	15	41607649	41607649	C	T	SNP	MAP1A	NM_002373	human	genbank	54_36p	1	reviewed	missense	c.6686	p.S2229L	0.99	NULL	-	-	no_errors
FBN1	2200	genome.wustl.edu	36	15	46500294	46500294	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	15	46500294	46500294	G	A	SNP	FBN1	NM_000138	human	genbank	54_36p	-1	reviewed	silent	c.7701	p.D2567	1	HMMPfam_EGF_CA	HMMPfam_TB;HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Growth factor receptor domain;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_TB module/8-cys domain	-	no_errors
SCG3	29106	genome.wustl.edu	36	15	49761280	49761280	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	15	49761280	49761280	G	C	SNP	SCG3	NM_013243	human	genbank	54_36p	1	reviewed	silent	c.36	p.V12	1	NULL	-	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359091	50359091	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	15	50359091	50359091	C	T	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.211	p.D71N	1	HMMPfam_Myosin_head	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_DIL;HMMPfam_Myosin_N;superfamily_Myosin S1 fragment N-terminal domain;superfamily_Hypothetical protein yfbM;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZSCAN10	84891	genome.wustl.edu	36	16	3082123	3082123	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	16	3082123	3082123	T	C	SNP	ZSCAN10	NM_032805	human	genbank	54_36p	-1	provisional	missense	c.427	p.R143G	0	NULL	-	-	no_errors
PLCG2	5336	genome.wustl.edu	36	16	80528917	80528917	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	16	80528917	80528917	T	G	SNP	PLCG2	NM_002661	human	genbank	54_36p	1	validated	missense	c.3106	p.Y1036D	1	HMMPfam_PI-PLC-Y	HMMPfam_C2;HMMPfam_PI-PLC-X;HMMPfam_SH2;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PI-PLC-Y;HMMPfam_PH;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_EF-hand;superfamily_PH domain-like;superfamily_PLC-like phosphodiesterases;superfamily_SH2 domain	-	no_errors
C1orf226	400793	genome.wustl.edu	36	1	160619999	160619999	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	1	160619999	160619999	C	G	SNP	C1orf226	NM_001085375	human	genbank	54_36p	1	validated	missense	c.721	p.L241V	1	NULL	-	-	no_errors
MYH3	4621	genome.wustl.edu	36	17	10486588	10486588	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	17	10486588	10486588	C	T	SNP	MYH3	NM_002470	human	genbank	54_36p	-1	reviewed	missense	c.1759	p.V587M	1	HMMPfam_Myosin_head	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HAP1	9001	genome.wustl.edu	36	17	37134774	37134774	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	17	37134774	37134774	G	C	SNP	HAP1	NM_177977	human	genbank	54_36p	-1	reviewed	missense	c.1565	p.A522G		NULL	-	-	no_errors
PELP1	27043	genome.wustl.edu	36	17	4524656	4524656	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	17	4524656	4524656	G	T	SNP	PELP1	NM_014389	human	genbank	54_36p	-1	validated	missense	c.1480	p.P494T	1	NULL	HMMPfam_NUC201;HMMPfam_NUC202;superfamily_ARM repeat;superfamily_beta-sandwich domain of Sec23/24	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514759	7514759	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	17	7514759	7514759	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.994-1	e9-1	1	-	-	-	no_errors
NOL4	8715	genome.wustl.edu	36	18	29939023	29939023	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	18	29939023	29939023	T	G	SNP	NOL4	NM_003787	human	genbank	54_36p	-1	validated	missense	c.514	p.T172P	1	NULL	-	-	no_errors
NCAN	1463	genome.wustl.edu	36	19	19210115	19210115	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	19210115	19210115	T	A	SNP	NCAN	NM_004386	human	genbank	54_36p	1	validated	missense	c.3304	p.Y1102N	0.97	NULL	HMMPfam_Sushi;HMMPfam_Xlink;HMMPfam_Lectin_C;HMMPfam_EGF;superfamily_Immunoglobulin;superfamily_C-type lectin-like;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain	-	no_errors
NPHS1	4868	genome.wustl.edu	36	19	41025292	41025292	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	41025292	41025292	C	A	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	nonsense	c.2335	p.G779*	0.75	NULL	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_V-set;HMMPfam_ig;HMMPfam_C2-set_2;superfamily_Immunoglobulin	-	no_errors
ZNF527	84503	genome.wustl.edu	36	19	42571282	42571289	+	Frame_Shift_Del	DEL	AATTTAGT	AATTTAGT	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	AATTTAGT	AATTTAGT	AATTTAGT	-	AATTTAGT	AATTTAGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	42571282	42571289	AATTTAGT	-	DEL	ZNF527	NM_032453	human	genbank	54_36p	1	validated	frame_shift_del	c.491_498	p.S166fs	0.016:0.011:0.015:0.000:0.000:0.000:0.000:0.000	NULL	-	(deletion:cds_exon[42571048;42572621])	no_errors
HNRNPL	3191	genome.wustl.edu	36	19	44029855	44029855	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	44029855	44029855	C	A	SNP	HNRNPL	NM_001533	human	genbank	54_36p	-1	reviewed	silent	c.327	p.L109	1	NULL	HMMPfam_RRM_1;superfamily_RNA-binding domain RBD	-	no_errors
CEACAM7	1087	genome.wustl.edu	36	19	46882638	46882638	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	46882638	46882638	T	C	SNP	CEACAM7	NM_006890	human	genbank	54_36p	-1	provisional	missense	c.419	p.Y140C	0	NULL	-	-	no_errors
GRIK5	2901	genome.wustl.edu	36	19	47261337	47261337	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	47261337	47261337	C	T	SNP	GRIK5	NM_002088	human	genbank	54_36p	-1	reviewed	missense	c.122	p.R41H	1	HMMPfam_ANF_receptor	HMMPfam_Lig_chan;HMMPfam_ANF_receptor;superfamily_Periplasmic binding protein-like I;superfamily_Periplasmic binding protein-like II	-	no_errors
FOSB	2354	genome.wustl.edu	36	19	50665942	50665942	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	50665942	50665942	T	G	SNP	FOSB	NM_006732	human	genbank	54_36p	1	reviewed	missense	c.342	p.S114R	1	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors;HMMPfam_bZIP_2	-	no_errors
C5AR1	728	genome.wustl.edu	36	19	52515843	52515843	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	52515843	52515843	G	T	SNP	C5AR1	NM_001736	human	genbank	54_36p	1	validated	missense	c.969	p.L323F	0.02	NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
INSR	3643	genome.wustl.edu	36	19	7068339	7068339	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	19	7068339	7068339	C	A	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	missense	c.3877	p.D1293Y	1	NULL	superfamily_Fibronectin type III;superfamily_Growth factor receptor domain;superfamily_Protein kinase-like (PK-like);superfamily_L domain-like;Recep_L_domain;HMMPfam_Recep_L_domain;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;fn3;HMMPfam_fn3;Furin-like;HMMPfam_Furin-like	-	no_errors
NCKAP5	344148	genome.wustl.edu	36	2	133257909	133257909	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	2	133257909	133257909	A	T	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	missense	c.2945	p.I982N	0.02	NULL	-	-	no_errors
RIF1	55183	genome.wustl.edu	36	2	152028237	152028237	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	2	152028237	152028237	A	C	SNP	RIF1	NM_018151	human	genbank	54_36p	1	validated	missense	c.3957	p.E1319D	0.48	NULL	superfamily_ARM repeat	-	no_errors
FRZB	2487	genome.wustl.edu	36	2	183411403	183411403	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	2	183411403	183411403	T	C	SNP	FRZB	NM_001463	human	genbank	54_36p	-1	validated	missense	c.776	p.Y259C	1	HMMPfam_NTR	HMMPfam_Fz;HMMPfam_NTR;superfamily_TIMP-like;superfamily_Frizzled cysteine-rich domain	-	no_errors
HECW2	57520	genome.wustl.edu	36	2	196892797	196892797	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	2	196892797	196892797	G	A	SNP	HECW2	NM_020760	human	genbank	54_36p	-1	provisional	silent	c.1062	p.D354	0.99	NULL	HMMPfam_C2;HMMPfam_HECT;HMMPfam_WW;superfamily_WW domain;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Hect E3 ligase catalytic domain	-	no_errors
HAAO	23498	genome.wustl.edu	36	2	42848133	42848133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	2	42848133	42848133	G	A	SNP	HAAO	NM_012205	human	genbank	54_36p	-1	reviewed	missense	c.809	p.S270F	0.26	NULL	HMMPfam_3-HAO;superfamily_RmlC-like cupins	-	no_errors
KDM3A	55818	genome.wustl.edu	36	2	86562679	86562679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	2	86562679	86562679	C	G	SNP	JMJD1A	NM_018433	human	genbank	54_36p	1	reviewed	silent	c.2628	p.P876	1	NULL	HMMPfam_JmjC;superfamily_Clavaminate synthase-like;superfamily_Cysteine-rich domain	-	no_errors
DEFB118	117285	genome.wustl.edu	36	20	29424617	29424617	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	20	29424617	29424617	G	A	SNP	DEFB118	NM_054112	human	genbank	54_36p	1	provisional	missense	c.355	p.V119I		NULL	-	-	no_errors
NFS1	9054	genome.wustl.edu	36	20	33732160	33732160	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	20	33732160	33732160	G	A	SNP	NFS1	NM_021100	human	genbank	54_36p	-1	reviewed	nonsense	c.703	p.Q235*	1	HMMPfam_Aminotran_5	HMMPfam_Aminotran_5;superfamily_PLP-dependent transferases	-	no_errors
STAU1	6780	genome.wustl.edu	36	20	47173074	47173074	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	20	47173074	47173074	C	G	SNP	STAU1	NM_017453	human	genbank	54_36p	-1	reviewed	missense	c.928	p.E310Q	0.99	NULL	-	-	no_errors
PAK7	57144	genome.wustl.edu	36	20	9509002	9509002	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	20	9509002	9509002	G	A	SNP	PAK7	NM_020341	human	genbank	54_36p	-1	reviewed	silent	c.780	p.S260	1	NULL	PBD;HMMPfam_PBD;Pkinase;HMMPfam_Pkinase	-	no_errors
ITGB2	3689	genome.wustl.edu	36	21	45151408	45151408	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	21	45151408	45151408	T	G	SNP	ITGB2	NM_000211	human	genbank	54_36p	-1	reviewed	missense	c.178	p.I60L		HMMPfam_Integrin_beta	superfamily_Integrin beta tail domain;Integrin_beta;HMMPfam_Integrin_beta;Integrin_B_tail;HMMPfam_Integrin_B_tail;EGF_2;HMMPfam_EGF_2;Integrin_b_cyt;HMMPfam_Integrin_b_cyt;vWA-like;superfamily_vWA-like;EGF/Laminin;superfamily_EGF/Laminin;Integrin domains;superfamily_Integrin domains;Integrin beta tail domain	-	no_errors
IL2RB	3560	genome.wustl.edu	36	22	35854460	35854460	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	22	35854460	35854460	G	T	SNP	IL2RB	NM_000878	human	genbank	54_36p	-1	reviewed	missense	c.1278	p.D426E	0.5	NULL	superfamily_Fibronectin type III	-	no_errors
TOB2	10766	genome.wustl.edu	36	22	40162846	40162846	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	22	40162846	40162846	C	G	SNP	TOB2	NM_016272	human	genbank	54_36p	-1	validated	silent	c.450	p.L150	1	NULL	HMMPfam_BTG;HMMPfam_PAM2	-	no_errors
SMC1B	27127	genome.wustl.edu	36	22	44168278	44168278	+	Missense_Mutation	SNP	C	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	A	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	22	44168278	44168278	C	A	SNP	SMC1B	NM_148674	human	genbank	54_36p	-1	validated	missense	c.1445	p.S482I	0.99	HMMPfam_SMC_N	HMMPfam_SMC_N;HMMPfam_SMC_hinge;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Smc hinge domain	-	no_errors
ACPP	55	genome.wustl.edu	36	3	133558249	133558269	+	In_Frame_Del	DEL	ATGAGACGCAGCACGAGCCGT	ATGAGACGCAGCACGAGCCGT	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	ATGAGACGCAGCACGAGCCGT	ATGAGACGCAGCACGAGCCGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	133558249	133558269	ATGAGACGCAGCACGAGCCGT	-	DEL	ACPP	NM_001099	human	genbank	54_36p	1	reviewed	in_frame_del	c.998_1018	p.ETQHEPY334in_frame_del	0.994:0.951:0.952:0.942:0.840:0.749:0.683:0.000:0.001:0.000:0.001:0.000:0.001:0.001:0.023:0.021:0.012:0.021:0.016:0.000:0.000	NULL	HMMPfam_Acid_phosphat_A;superfamily_Phosphoglycerate mutase-like	(deletion:cds_exon[133558220;133558412])	no_errors
PLD1	5337	genome.wustl.edu	36	3	172887213	172887213	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	172887213	172887213	T	A	SNP	PLD1	NM_002662	human	genbank	54_36p	-1	validated	missense	c.1823	p.H608L	0.4	NULL	HMMPfam_PX;HMMPfam_PLDc;HMMPfam_PH;superfamily_PH domain-like;superfamily_Phospholipase D/nuclease;superfamily_PX domain	-	no_errors
RPL15	6138	genome.wustl.edu	36	3	23935904	23935904	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	23935904	23935904	G	T	SNP	RPL15	NM_002948	human	genbank	54_36p	1	reviewed	nonsense	c.523	p.G175*	1	NULL	-	-	no_errors
PLXNB1	5364	genome.wustl.edu	36	3	48425879	48425879	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	48425879	48425879	C	G	SNP	PLXNB1	NM_002673	human	genbank	54_36p	-1	validated	silent	c.5949	p.L1983	1	NULL	-	-	no_errors
USP19	10869	genome.wustl.edu	36	3	49123255	49123255	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	49123255	49123255	C	A	SNP	USP19	NM_006677	human	genbank	54_36p	-1	provisional	silent	c.3282	p.L1094	1	NULL	-	-	no_errors
CACNA2D3	55799	genome.wustl.edu	36	3	54996819	54996819	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	54996819	54996819	A	T	SNP	CACNA2D3	NM_018398	human	genbank	54_36p	1	reviewed	nonsense	c.2689	p.R897*	1	NULL	HMMPfam_VWA;HMMPfam_Cache_1;HMMPfam_VWA_N;superfamily_vWA-like	-	no_errors
PDHB	5162	genome.wustl.edu	36	3	58389325	58389325	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	58389325	58389325	G	A	SNP	PDHB	NM_000925	human	genbank	54_36p	-1	validated	silent	c.849	p.V283	1	HMMPfam_Transketolase_C	HMMPfam_Transket_pyr;HMMPfam_Transketolase_C;superfamily_TK C-terminal domain-like;superfamily_Thiamin diphosphate-binding fold (THDP-binding)	-	no_errors
PDZRN3	23024	genome.wustl.edu	36	3	73516571	73516571	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	3	73516571	73516571	G	A	SNP	PDZRN3	NM_015009	human	genbank	54_36p	-1	provisional	silent	c.1836	p.T612	1	NULL	-	-	no_errors
USP53	54532	genome.wustl.edu	36	4	120408927	120408927	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	4	120408927	120408927	G	C	SNP	USP53	NM_019050	human	genbank	54_36p	1	validated	missense	c.1192	p.D398H	0.77	NULL	-	-	no_errors
KIAA1109	84162	genome.wustl.edu	36	4	123487309	123487309	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	4	123487309	123487309	A	G	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	missense	c.12815	p.Y4272C	1	NULL	-	-	no_errors
FAT4	79633	genome.wustl.edu	36	4	126628179	126628179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	4	126628179	126628179	C	T	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	missense	c.12875	p.P4292L	1	NULL	-	-	no_errors
FBXL5	26234	genome.wustl.edu	36	4	15237620	15237629	+	Frame_Shift_Del	DEL	AGTCTGGGTA	AGTCTGGGTA	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	AGTCTGGGTA	AGTCTGGGTA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	4	15237620	15237629	AGTCTGGGTA	-	DEL	FBXL5	NM_012161	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1098_1089	p.Q365fs	0.998:1.000:1.000:0.998:1.000:1.000:0.998:1.000:1.000:0.991	HMMPfam_LRR_1	HMMPfam_LRR_1;HMMPfam_F-box;HMMPfam_LRR_2;superfamily_RNI-like;superfamily_F-box domain	(deletion:cds_exon[15237594;15237676])	no_errors
WNT8A	7478	genome.wustl.edu	36	5	137447842	137447842	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	5	137447842	137447842	G	C	SNP	WNT8A	NM_058244	human	genbank	54_36p	1	reviewed	missense	c.73	p.V25L	1	HMMPfam_wnt	HMMPfam_wnt	-	no_errors
FAM53C	51307	genome.wustl.edu	36	5	137710460	137710460	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	5	137710460	137710460	G	T	SNP	FAM53C	NM_016605	human	genbank	54_36p	1	validated	silent	c.1092	p.V364	0.99	NULL	-	-	no_errors
PCDHGA5	56110	genome.wustl.edu	36	5	140725975	140725975	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	5	140725975	140725975	C	A	SNP	PCDHGA5	NM_018918	human	genbank	54_36p	1	reviewed	missense	c.1894	p.L632M	0.18	NULL	-	-	no_errors
GABRG2	2566	genome.wustl.edu	36	5	161463609	161463609	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	5	161463609	161463609	C	A	SNP	GABRG2	NM_198904	human	genbank	54_36p	1	reviewed	silent	c.768	p.S256	0.99	HMMPfam_Neur_chan_LBD	HMMPfam_Neur_chan_memb;HMMPfam_Neur_chan_LBD;superfamily_Nicotinic receptor ligand binding domain-like;superfamily_Neurotransmitter-gated ion-channel transmembrane pore	-	no_errors
RUFY1	80230	genome.wustl.edu	36	5	178969029	178969029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	5	178969029	178969029	G	C	SNP	RUFY1	NM_025158	human	genbank	54_36p	1	validated	missense	c.2030	p.S677T	1	NULL	-	-	no_errors
CDH18	1016	genome.wustl.edu	36	5	19874754	19874754	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	5	19874754	19874754	C	T	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	silent	c.99	p.V33	1	NULL	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
OR4A13P	81330	genome.wustl.edu	36	11	54991325	54991325	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	54991325	54991325	G	T	SNP	OR4A13P	ENST00000314689	human	ensembl	54_36p	1	known	missense	c.218	p.G73V	0.01	HMMPfam_7tm_1	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
HACE1	57531	genome.wustl.edu	36	6	105305031	105305031	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	105305031	105305031	C	G	SNP	HACE1	NM_020771	human	genbank	54_36p	-1	validated	missense	c.2221	p.V741L	1	NULL	-	-	no_errors
LAMA4	3910	genome.wustl.edu	36	6	112550011	112550011	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	112550011	112550011	G	A	SNP	LAMA4	NM_001105206	human	genbank	54_36p	-1	reviewed	silent	c.4374	p.H1458	1	NULL	-	-	no_errors
MAP3K5	4217	genome.wustl.edu	36	6	137061319	137061319	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	137061319	137061319	C	G	SNP	MAP3K5	NM_005923	human	genbank	54_36p	-1	reviewed	splice_site	c.806+1	e4+1	1	-	-	-	no_errors
SYNE1	23345	genome.wustl.edu	36	6	152725072	152725072	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	152725072	152725072	C	A	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	nonsense	c.10225	p.E3409*	1	NULL	superfamily_Spectrin repeat;superfamily_Calponin-homology domain CH-domain;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain;HMMPfam_CH;HMMPfam_Spectrin	-	no_errors
PPP1R11	6992	genome.wustl.edu	36	6	30144886	30144886	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	30144886	30144886	G	T	SNP	PPP1R11	NM_021959	human	genbank	54_36p	1	reviewed	missense	c.205	p.A69S	1	HMMPfam_PPI_Ypi1	HMMPfam_PPI_Ypi1	-	no_errors
VARS	7407	genome.wustl.edu	36	6	31854754	31854754	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	31854754	31854754	G	A	SNP	VARS	NM_006295	human	genbank	54_36p	-1	reviewed	missense	c.3695	p.P1232L	0.99	NULL	HMMPfam_tRNA-synt_1;HMMPfam_GST_N;HMMPfam_GST_C;superfamily_ValRS/IleRS/LeuRS editing domain;superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;superfamily_tRNA-binding arm;superfamily_Glutathione S-transferase (GST) C-terminal domain;HMMPfam_Anticodon_1;superfamily_Nucleotidylyl transferase	-	no_errors
BRD2	6046	genome.wustl.edu	36	6	33053885	33053885	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	33053885	33053885	G	C	SNP	BRD2	NM_005104	human	genbank	54_36p	1	reviewed	missense	c.1583	p.R528P	0.74	NULL	HMMPfam_Bromodomain;superfamily_Bromodomain	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51591933	51591933	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	6	51591933	51591933	A	C	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.12130	p.L4044V		NULL	HMMPfam_TIG;superfamily_Pectin lyase-like;superfamily_E set domains;superfamily_Anthrax protective antigen	-	no_errors
OR52L2P	79274	genome.wustl.edu	36	11	6035139	6035139	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	11	6035139	6035139	G	A	SNP	OR52L2P	ENST00000316540	human	ensembl	54_36p	-1	known	nonsense	c.943	p.Q315*	0.01	NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121438335	121438335	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	7	121438335	121438335	G	T	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	nonsense	c.1999	p.G667*		NULL	superfamily_Carbonic anhydrase;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_(Phosphotyrosine protein) phosphatases II;HMMPfam_Y_phosphatase;HMMPfam_Carb_anhydrase	-	no_errors
AMPH	273	genome.wustl.edu	36	7	38395993	38395993	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	7	38395993	38395993	A	G	SNP	AMPH	NM_001635	human	genbank	54_36p	-1	reviewed	silent	c.1917	p.D639	1	HMMPfam_SH3_1	HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_BAR	-	no_errors
VSTM2A	222008	genome.wustl.edu	36	7	54585204	54585204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	7	54585204	54585204	G	A	SNP	VSTM2A	NM_182546	human	genbank	54_36p	1	validated	missense	c.481	p.E161K	1	NULL	-	-	no_errors
PMS2CL	5395	genome.wustl.edu	36	7	6743617	6743617	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	7	6743617	6743617	C	A	SNP	PMS2CL	ENST00000338780	human	ensembl	54_36p	1	known	missense	c.372	p.D124E	0.03	NULL	-	-	no_errors
RSPO2	340419	genome.wustl.edu	36	8	109070506	109070506	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	8	109070506	109070506	T	A	SNP	RSPO2	NM_178565	human	genbank	54_36p	-1	validated	silent	c.237	p.P79	0.99	NULL	superfamily_Growth factor receptor domain;superfamily_TSP-1 type 1 repeat	-	no_errors
MSR1	4481	genome.wustl.edu	36	8	16012099	16012099	+	Splice_Site	SNP	C	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	8	16012099	16012099	C	T	SNP	MSR1	NM_138715	human	genbank	54_36p	-1	reviewed	splice_site	c.1223-1	e9-1	1	-	-	-	no_errors
FUT10	84750	genome.wustl.edu	36	8	33366290	33366290	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	8	33366290	33366290	A	C	SNP	FUT10	NM_032664	human	genbank	54_36p	-1	validated	silent	c.945	p.L315	1	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors
STAR	6770	genome.wustl.edu	36	8	38125411	38125411	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	8	38125411	38125411	A	T	SNP	STAR	NM_000349	human	genbank	54_36p	-1	reviewed	missense	c.83	p.V28E	0	NULL	HMMPfam_START;superfamily_Bet v1-like	-	no_errors
RB1CC1	9821	genome.wustl.edu	36	8	53717642	53717642	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	8	53717642	53717642	C	A	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	nonsense	c.4159	p.E1387*	1	NULL	superfamily_Prefoldin;superfamily_Ubiquitin-like	-	no_errors
TMEM67	91147	genome.wustl.edu	36	8	94878859	94878859	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	8	94878859	94878859	C	T	SNP	TMEM67	NM_153704	human	genbank	54_36p	1	reviewed	silent	c.2055	p.V685	0.92	NULL	-	-	no_errors
TMEM38B	55151	genome.wustl.edu	36	9	107507714	107507714	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	9	107507714	107507714	C	A	SNP	TMEM38B	NM_018112	human	genbank	54_36p	1	provisional	missense	c.128	p.A43E	0.19	NULL	-	-	no_errors
TNFSF8	944	genome.wustl.edu	36	9	116706094	116706094	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	9	116706094	116706094	C	T	SNP	TNFSF8	NM_001244	human	genbank	54_36p	-1	reviewed	missense	c.643	p.D215N	1	HMMPfam_TNF	HMMPfam_TNF;superfamily_TNF-like	-	no_errors
APTX	54840	genome.wustl.edu	36	9	32979805	32979805	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	9	32979805	32979805	G	A	SNP	APTX	NM_175073	human	genbank	54_36p	-1	reviewed	missense	c.85	p.R29C	1	NULL	HMMPfam_HIT;superfamily_SMAD/FHA domain;superfamily_HIT-like	-	no_errors
NAA35	60560	genome.wustl.edu	36	9	87746931	87746931	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	9	87746931	87746931	G	-	DEL	MAK10	NM_024635	human	genbank	54_36p	1	validated	frame_shift_del	c.37	p.G13fs	1	NULL	-	(deletion:cds_exon[87746895;87747018])	no_errors
GPRASP2	114928	genome.wustl.edu	36	X	101857976	101857976	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	X	101857976	101857976	T	G	SNP	GPRASP2	NM_001004051	human	genbank	54_36p	1	validated	missense	c.1523	p.F508C	0.96	NULL	HMMPfam_DUF634;superfamily_ARM repeat	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123458777	123458777	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	X	123458777	123458777	A	T	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.3465	p.N1155K	1	NULL	HMMPfam_NHL;HMMPfam_EGF;HMMPfam_RHS_repeat;superfamily_Carboxypeptidase regulatory domain;HMMPfam_Ten_N;superfamily_Nitrous oxide reductase N-terminal domain;HMMPfam_EGF_2;superfamily_NHL repeat;superfamily_EGF/Laminin	-	no_errors
USP11	8237	genome.wustl.edu	36	X	46986479	46986479	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	X	46986479	46986479	G	A	SNP	USP11	NM_004651	human	genbank	54_36p	1	reviewed	missense	c.1363	p.V455M	1	NULL	-	-	no_errors
BMP15	9210	genome.wustl.edu	36	X	50676045	50676045	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	b00d9680-4099-43fe-87de-b3cc8b9e70c8	30b2b852-217f-459e-bac0-5e2df47fded7	X	50676045	50676045	C	A	SNP	BMP15	NM_005448	human	genbank	54_36p	1	reviewed	missense	c.877	p.L293I	0.37	HMMPfam_TGF_beta	HMMPfam_TGF_beta;superfamily_Cystine-knot cytokines	-	no_errors
