Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
LRIG2	9860	genome.wustl.edu	36	1	113442849	113442849	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	1	113442849	113442849	G	A	SNP	LRIG2	NM_014813	human	genbank	54_36p	1	provisional	splice_site	c.1092-1	e9-1	1	-	-	-	no_errors
BCL2L15	440603	genome.wustl.edu	36	1	114230738	114230738	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	1	114230738	114230738	T	G	SNP	BCL2L15	NM_001010922	human	genbank	54_36p	-1	validated	missense	c.193	p.N65H	0.96	NULL	-	-	no_errors
IGSF3	3321	genome.wustl.edu	36	1	116933217	116933217	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	1	116933217	116933217	T	C	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.2122	p.T708A	1	NULL	-	-	no_errors
LHX8	431707	genome.wustl.edu	36	1	75381411	75381411	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	1	75381411	75381411	C	T	SNP	LHX8	NM_001001933	human	genbank	54_36p	1	validated	missense	c.410	p.S137F	1	NULL	-	-	no_errors
FAM160A2	84067	genome.wustl.edu	36	11	6195620	6195620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	11	6195620	6195620	C	T	SNP	FAM160A2	NM_032127	human	genbank	54_36p	-1	validated	missense	c.1814	p.R605Q	1	NULL	-	-	no_errors
SYTL2	54843	genome.wustl.edu	36	11	85113990	85113990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	11	85113990	85113990	C	T	SNP	SYTL2	NM_206927	human	genbank	54_36p	-1	reviewed	silent	c.1158	p.S386	1	NULL	HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107723085	107723085	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	12	107723085	107723085	C	T	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.830	p.R277H	1	NULL	-	-	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124701392	124701392	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	12	124701392	124701392	C	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	silent	c.1839	p.I613	0.39	NULL	-	-	no_errors
OVCH1	341350	genome.wustl.edu	36	12	29488472	29488472	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	12	29488472	29488472	C	T	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.2890	p.D964N	0.01	NULL	HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Trypsin;superfamily_Trypsin-like serine proteases	-	no_errors
RASSF9	9182	genome.wustl.edu	36	12	84723176	84723176	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	12	84723176	84723176	T	A	SNP	RASSF9	NM_005447	human	genbank	54_36p	-1	reviewed	missense	c.743	p.D248V		NULL	-	-	no_errors
ATP4B	496	genome.wustl.edu	36	13	113355240	113355240	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	13	113355240	113355240	G	C	SNP	ATP4B	NM_000705	human	genbank	54_36p	-1	reviewed	silent	c.504	p.P168	0.52	HMMPfam_Na_K-ATPase	HMMPfam_Na_K-ATPase	-	no_errors
PABPC1P2	728773	genome.wustl.edu	36	2	147062247	147062247	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	2	147062247	147062247	T	C	SNP	PABPCP2	ENST00000359464	human	ensembl	54_36p	1	known	silent	c.237	p.N79	0.53	NULL	-	-	no_errors
RHPN2P1	646090	genome.wustl.edu	36	15	18722625	18722625	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	15	18722625	18722625	C	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ALPK3	57538	genome.wustl.edu	36	15	83201506	83201506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	15	83201506	83201506	G	C	SNP	ALPK3	NM_020778	human	genbank	54_36p	1	validated	missense	c.3139	p.G1047R		NULL	HMMPfam_Alpha_kinase;superfamily_Protein kinase-like (PK-like);HMMPfam_I-set;superfamily_Immunoglobulin	-	no_errors
GPR179	440435	genome.wustl.edu	36	17	33737958	33737958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	17	33737958	33737958	G	A	SNP	GPR179	NM_001004334	human	genbank	54_36p	-1	validated	missense	c.5020	p.L1674F		NULL	-	-	no_errors
FAM38B	63895	genome.wustl.edu	36	18	10681284	10681284	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	18	10681284	10681284	G	A	SNP	FAM38B	NM_022068	human	genbank	54_36p	-1	predicted	nonsense	c.514	p.R172*	0.99	NULL	-	-	no_errors
KIAA0427	9811	genome.wustl.edu	36	18	44538502	44538502	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	18	44538502	44538502	G	A	SNP	KIAA0427	NM_014772	human	genbank	54_36p	1	validated	missense	c.799	p.A267T		NULL	HMMPfam_MIF4G;superfamily_ARM repeat	-	no_errors
BTBD2	55643	genome.wustl.edu	36	19	1948416	1948416	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	19	1948416	1948416	C	T	SNP	BTBD2	NM_017797	human	genbank	54_36p	-1	reviewed	missense	c.454	p.G152R	1	HMMPfam_BTB	HMMPfam_BACK;HMMPfam_PHR;HMMPfam_BTB;superfamily_POZ domain	-	no_errors
ANKRD27	84079	genome.wustl.edu	36	19	37788636	37788636	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	19	37788636	37788636	G	A	SNP	ANKRD27	NM_032139	human	genbank	54_36p	-1	validated	missense	c.2438	p.P813L	1	HMMPfam_Ank	HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_VPS9;superfamily_VPS9 domain (Pfam 02204)	-	no_errors
BTN1A1	696	genome.wustl.edu	36	6	26610033	26610033	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	6	26610033	26610033	C	A	SNP	BTN1A1	NM_001732	human	genbank	54_36p	1	validated	missense	c.316	p.R106S		NULL	-	-	no_errors
TFAP2D	83741	genome.wustl.edu	36	6	50790800	50790800	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	6	50790800	50790800	G	A	SNP	TFAP2D	NM_172238	human	genbank	54_36p	1	validated	missense	c.52	p.G18R	1	NULL	-	-	no_errors
ENSG00000214552	0	genome.wustl.edu	36	3	68276961	68276961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	3	68276961	68276961	C	T	SNP	ENSG00000214552	ENST00000398570	human	ensembl	54_36p	1	known	missense	c.118	p.R40C	0.3	NULL	-	-	no_errors
ABCA13	154664	genome.wustl.edu	36	7	48288863	48288863	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	7	48288863	48288863	G	T	SNP	ABCA13	NM_152701	human	genbank	54_36p	1	reviewed	missense	c.7363	p.V2455L		NULL	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GLIS3	169792	genome.wustl.edu	36	9	3846099	3846099	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	9	3846099	3846099	G	C	SNP	GLIS3	NM_001042413	human	genbank	54_36p	-1	reviewed	missense	c.2383	p.P795A	1	NULL	-	-	no_errors
WASH1	100287171	genome.wustl.edu	36	9	4863	4863	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	9	4863	4863	A	G	SNP	WASH1	NM_182905	human	genbank	54_36p	-1	validated	silent	c.739	p.L247	1	NULL	-	-	no_errors
CD99L2	83692	genome.wustl.edu	36	X	149689456	149689456	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	X	149689456	149689456	C	T	SNP	CD99L2	NM_031462	human	genbank	54_36p	-1	validated	missense	c.700	p.V234M	1	NULL	-	-	no_errors
PPP1R3F	89801	genome.wustl.edu	36	X	49030032	49030032	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	X	49030032	49030032	A	T	SNP	PPP1R3F	NM_033215	human	genbank	54_36p	1	validated	missense	c.1936	p.M646L	0.13	NULL	HMMPfam_CBM_21	-	no_errors
LOC441505	441505	genome.wustl.edu	36	X	85227167	85227167	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7534b542-88f8-445c-ae4a-9f44fb6798a8	c8e62840-3b96-452f-b0c1-1f755f41931f	X	85227167	85227167	C	G	SNP	LOC441505	XR_016229	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
