Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
HIST2H3PS2	440686	genome.wustl.edu	36	1	147667142	147667142	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	147667142	147667142	G	A	SNP	HIST2H3PS2	ENST00000369176	human	ensembl	54_36p	-1	known	missense	c.25	p.R9C	1	NULL	-	-	no_errors
ZNF687	57592	genome.wustl.edu	36	1	149525896	149525896	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	149525896	149525896	G	A	SNP	ZNF687	NM_020832	human	genbank	54_36p	1	provisional	missense	c.505	p.E169K	1	NULL	superfamily_C2H2 and C2HC zinc fingers;HMMPfam_zf-C2H2	-	no_errors
FLAD1	80308	genome.wustl.edu	36	1	153227424	153227424	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	153227424	153227424	G	C	SNP	FLAD1	NM_025207	human	genbank	54_36p	1	reviewed	missense	c.592	p.E198Q	0.31	HMMPfam_MoCF_biosynth	HMMPfam_MoCF_biosynth;superfamily_Molybdenum cofactor biosynthesis proteins;HMMPfam_PAPS_reduct;superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
FCRL3	115352	genome.wustl.edu	36	1	155933778	155933778	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	155933778	155933778	A	T	SNP	FCRL3	NM_052939	human	genbank	54_36p	-1	reviewed	missense	c.620	p.M207K	0.91	NULL	-	-	no_errors
PIGM	93183	genome.wustl.edu	36	1	158267377	158267377	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	158267377	158267377	A	G	SNP	PIGM	NM_145167	human	genbank	54_36p	-1	reviewed	silent	c.777	p.F259	0.99	HMMPfam_Mannosyl_trans	HMMPfam_Mannosyl_trans	-	no_errors
C1orf144	26099	genome.wustl.edu	36	1	16592355	16592356	+	Frame_Shift_Ins	INS	-	-	ATTGT	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	16592355	16592356	-	ATTGT	INS	C1orf144	NM_015609	human	genbank	54_36p	1	provisional	frame_shift_ins	c.90_91	p.D30fs	1.000:1.000	NULL	-	-	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181346371	181346371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	181346371	181346371	C	G	SNP	LAMC1	NM_002293	human	genbank	54_36p	1	reviewed	missense	c.980	p.P327R	1	HMMPfam_Laminin_EGF	HMMPfam_Laminin_B;HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Growth factor receptor domain;superfamily_EGF/Laminin	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181810245	181810245	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	181810245	181810245	C	G	SNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.501	p.W167C	1	NULL	HMMPfam_PB1;HMMPfam_TPR_1;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_TPR-like;superfamily_CAD  PB1 domains	-	no_errors
LMOD1	25802	genome.wustl.edu	36	1	200135833	200135833	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	200135833	200135833	C	T	SNP	LMOD1	ENST00000367288	human	ensembl	54_36p	-1	known	missense	c.931	p.E311K	1	NULL	-	-	no_errors
ARL8A	127829	genome.wustl.edu	36	1	200371488	200371488	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	200371488	200371488	T	C	SNP	ARL8A	NM_138795	human	genbank	54_36p	-1	validated	silent	c.342	p.L114	0.86	HMMPfam_Arf	HMMPfam_Arf;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212882202	212882202	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	212882202	212882202	C	T	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	silent	c.3898	p.L1300	0.01	NULL	Spectrin repeat;superfamily_Spectrin repeat;BAG domain;superfamily_BAG domain	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243928855	243928855	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	243928855	243928855	G	A	SNP	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	missense	c.6071	p.R2024H	1	NULL	-	-	no_errors
BRDT	676	genome.wustl.edu	36	1	92214479	92214479	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	1	92214479	92214479	T	G	SNP	BRDT	NM_001726	human	genbank	54_36p	1	validated	missense	c.514	p.F172V		NULL	HMMPfam_Bromodomain;superfamily_Bromodomain	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17125901	17125901	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	10	17125901	17125901	T	A	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.3760	p.S1254C	0.94	HMMPfam_CUB	HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_EGF;HMMPfam_EGF_CA;superfamily_EGF/Laminin	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24926891	24926891	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	10	24926891	24926891	G	C	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.3183	p.N1061K	1	NULL	HMMPfam_RhoGAP;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_PH;superfamily_GTPase activation domain GAP;superfamily_PH domain-like	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25927612	25927612	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	10	25927612	25927612	T	C	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	silent	c.3051	p.G1017	0.9	NULL	HMMPfam_7tm_3;superfamily_EGF/Laminin	-	no_errors
COL13A1	1305	genome.wustl.edu	36	10	71348079	71348079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	10	71348079	71348079	G	A	SNP	COL13A1	NM_005203	human	genbank	54_36p	1	reviewed	silent	c.1029	p.K343	1	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
SNORD114-11	767589	genome.wustl.edu	36	14	100504268	100504268	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	14	100504268	100504268	A	T	SNP	SNORD114-11	NR_003204	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.02	-	-	-	no_errors
LOC340970	340970	genome.wustl.edu	36	11	48965650	48965650	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	11	48965650	48965650	G	T	SNP	LOC340970	XR_042351	human	genbank	54_36p	-1	model	rna	NULL	NULL		-	-	-	pseudogene
OR51A4	401666	genome.wustl.edu	36	11	4924365	4924365	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	11	4924365	4924365	C	T	SNP	OR51A4	NM_001005329	human	genbank	54_36p	-1	provisional	missense	c.542	p.C181Y	0.99	NULL	-	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92172530	92172530	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	11	92172530	92172530	T	G	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.6703	p.F2235V	1	NULL	-	-	no_errors
CMAS	55907	genome.wustl.edu	36	12	22105655	22105655	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	12	22105655	22105655	T	G	SNP	CMAS	NM_018686	human	genbank	54_36p	1	reviewed	splice_site	c.960+2	e6+2	1	-	-	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2659073	2659073	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	12	2659073	2659073	C	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.5294	p.A1765D	1	NULL	HMMPfam_Ion_trans;HMMPfam_Ca_chan_IQ;superfamily_EF-hand;superfamily_Voltage-gated potassium channels	-	no_errors
DDX23	9416	genome.wustl.edu	36	12	47513508	47513508	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	12	47513508	47513508	C	A	SNP	DDX23	NM_004818	human	genbank	54_36p	-1	reviewed	missense	c.1622	p.S541I	1	HMMPfam_DEAD	HMMPfam_Helicase_C;HMMPfam_DEAD;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OS9	10956	genome.wustl.edu	36	12	56398264	56398265	+	Nonsense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	12	56398264	56398265	GA	TT	DNP	OS9	NM_006812	human	genbank	54_36p	1	reviewed	nonsense	c.1203_1204	p.EKE401D*	0.035:0.194	NULL	superfamily_Mannose 6-phosphate receptor domain;HMMPfam_PRKCSH	-	no_errors
MDM1	56890	genome.wustl.edu	36	12	67006998	67006998	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	12	67006998	67006998	A	C	SNP	MDM1	NM_017440	human	genbank	54_36p	-1	reviewed	silent	c.204	p.S68	1	NULL	-	-	no_errors
RB1	5925	genome.wustl.edu	36	13	47937406	47937422	+	Frame_Shift_Del	DEL	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	-		Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	-	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	13	47937406	47937422	TACGGATTCCTGGAGGG	-	DEL	RB1	NM_000321	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2390_2406	p.L797fs	0.997:0.978:1.000:1.000:0.968:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.958:0.443:0.994:1.000:0.997	HMMPfam_Rb_C	RB_B,HMMPfam_RB_B,RB_A,HMMPfam_RB_A,Rb_C,HMMPfam_Rb_C	(deletion:cds_exon[47937342,47937505])	no_errors
IGHM	3507	genome.wustl.edu	36	14	105391761	105391761	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	14	105391761	105391761	C	A	SNP	IGHM	ENST00000390558	human	ensembl	54_36p	-1	known	nonsense	c.1093	p.G365*	1	NULL	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
G2E3	55632	genome.wustl.edu	36	14	30128370	30128374	+	Frame_Shift_Del	DEL	AAAGA	AAAGA	-	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	AAAGA	AAAGA	AAAGA	-	AAAGA	AAAGA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	14	30128370	30128374	AAAGA	-	DEL	G2E3	NM_017769	human	genbank	54_36p	1	validated	frame_shift_del	c.166_170	p.K56fs	0.997:1.000:1.000:1.000:1.000	NULL	-	(deletion:cds_exon[30128340;30128441])	no_errors
EML5	161436	genome.wustl.edu	36	14	88275019	88275019	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	14	88275019	88275019	T	C	SNP	EML5	NM_183387	human	genbank	54_36p	-1	validated	silent	c.804	p.P268	1	NULL	HMMPfam_WD40;HMMPfam_HELP;superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase;superfamily_WD40 repeat-like	-	no_errors
B2M	567	genome.wustl.edu	36	15	42791037	42791037	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	15	42791037	42791037	A	G	SNP	B2M	NM_004048	human	genbank	54_36p	1	validated	missense	c.1	p.M1V	0.06	NULL	-	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43347163	43347163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	15	43347163	43347163	C	T	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.1076	p.A359V	1	NULL	-	-	no_errors
LOC100130935	100130935	genome.wustl.edu	36	X	151647365	151647365	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	X	151647365	151647365	G	T	SNP	LOC100130935	XM_001721280	human	genbank	54_36p	-1	model	silent	c.114	p.A38		NULL	-	-	no_errors
WDR24	84219	genome.wustl.edu	36	16	679276	679276	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	16	679276	679276	C	T	SNP	WDR24	NM_032259	human	genbank	54_36p	-1	provisional	silent	c.366	p.T122	0.889	NULL	-	-	no_errors
SLC4A1	6521	genome.wustl.edu	36	17	39690943	39690944	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	17	39690943	39690944	CC	AG	DNP	SLC4A1	NM_000342	human	genbank	54_36p	-1	reviewed	missense	c.1219_1218	p.A407S	1.000:1.000	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517583	7517583	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	17	7517583	7517583	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.988	p.L330fs	1	HMMPfam_P53_tetramer	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	(deletion:cds_exon[7517578;7517651])	no_errors
KLHL26	55295	genome.wustl.edu	36	19	18640040	18640040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	19	18640040	18640040	G	A	SNP	KLHL26	NM_018316	human	genbank	54_36p	1	provisional	missense	c.833	p.R278H	1	NULL	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_BACK,HMMPfam_BTB,superfamily_POZ domain	-	no_errors
NPHS1	4868	genome.wustl.edu	36	19	41026974	41026974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	19	41026974	41026974	G	A	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	missense	c.2083	p.R695W	1	HMMPfam_I-set	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_V-set;HMMPfam_ig;HMMPfam_C2-set_2;superfamily_Immunoglobulin	-	no_errors
LTBP4	8425	genome.wustl.edu	36	19	45807382	45807382	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	19	45807382	45807382	C	G	SNP	LTBP4	ENST00000308370	human	ensembl	54_36p	1	known	silent	c.1734	p.L578	1	NULL	-	-	no_errors
CYP2B6	1555	genome.wustl.edu	36	19	46210210	46210210	+	Nonsense_Mutation	SNP	C	C	T	rs34097093	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	19	46210210	46210210	C	T	SNP	CYP2B6	NM_000767	human	genbank	54_36p	1	reviewed	nonsense	c.1132	p.R378*	0.81	NULL	-	-	no_errors
ZNF577	84765	genome.wustl.edu	36	19	57068423	57068423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	19	57068423	57068423	T	C	SNP	ZNF577	NM_032679	human	genbank	54_36p	-1	validated	missense	c.611	p.E204G	1	NULL	-	-	no_errors
ZNF83	55769	genome.wustl.edu	36	19	57809701	57809701	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	19	57809701	57809701	A	C	SNP	ZNF83	NR_003936	human	genbank	54_36p	-1	validated	rna	NULL	NULL		-	-	-	no_errors
PRPF31	26121	genome.wustl.edu	36	19	59319829	59319829	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	19	59319829	59319829	C	T	SNP	PRPF31	NM_015629	human	genbank	54_36p	1	reviewed	silent	c.837	p.I279	0.75	HMMPfam_Nop	HMMPfam_Nop;HMMPfam_NOSIC;superfamily_Nop domain	-	no_errors
ST6GAL2	84620	genome.wustl.edu	36	2	106815517	106815517	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	106815517	106815517	G	A	SNP	ST6GAL2	NM_032528	human	genbank	54_36p	-1	validated	missense	c.1079	p.S360L	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29;superfamily_Glycoside hydrolase/deacetylase	-	no_errors
DDX18	8886	genome.wustl.edu	36	2	118303345	118303345	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	118303345	118303345	T	C	SNP	DDX18	NM_006773	human	genbank	54_36p	1	reviewed	missense	c.1703	p.L568S	1	NULL	HMMPfam_Helicase_C;HMMPfam_DEAD;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MAP3K2	10746	genome.wustl.edu	36	2	127788865	127788865	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	127788865	127788865	G	C	SNP	MAP3K2	NM_006609	human	genbank	54_36p	-1	reviewed	missense	c.1391	p.T464S	1	HMMPfam_Pkinase	PB1;HMMPfam_PB1;Pkinase;HMMPfam_Pkinase	-	no_errors
MBD5	55777	genome.wustl.edu	36	2	148964276	148964276	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	148964276	148964276	A	C	SNP	MBD5	NM_018328	human	genbank	54_36p	1	validated	silent	c.3906	p.G1302	1	NULL	-	-	no_errors
SCN2A	6326	genome.wustl.edu	36	2	165878420	165878420	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	165878420	165878420	C	T	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	missense	c.1079	p.P360L	1	HMMPfam_Ion_trans	HMMPfam_IQ;HMMPfam_Ion_trans;HMMPfam_Na_trans_assoc;superfamily_EF-hand;superfamily_Voltage-gated potassium channels	-	no_errors
SCN1A	6323	genome.wustl.edu	36	2	166560775	166560775	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	166560775	166560775	T	A	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	silent	c.4542	p.R1514	1	NULL	HMMPfam_IQ;HMMPfam_Ion_trans;HMMPfam_Na_trans_assoc;superfamily_EF-hand;superfamily_Voltage-gated potassium channels	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179324750	179324750	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	179324750	179324750	T	A	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	missense	c.10622	p.N3541I	0.93	HMMPfam_I-set	HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_Immunoglobulin,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
RHBDD1	84236	genome.wustl.edu	36	2	227487240	227487240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	227487240	227487240	A	G	SNP	RHBDD1	NM_032276	human	genbank	54_36p	1	provisional	missense	c.785	p.D262G	0.65	NULL	HMMPfam_Rhomboid	-	no_errors
SP110	3431	genome.wustl.edu	36	2	230745064	230745064	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	2	230745064	230745064	T	A	SNP	SP110	NM_080424	human	genbank	54_36p	-1	reviewed	nonsense	c.1777	p.K593*	0.01	NULL	HMMPfam_SAND;HMMPfam_Bromodomain;HMMPfam_PHD;HMMPfam_Sp100;superfamily_SAND domain-like;superfamily_FYVE/PHD zinc finger;superfamily_Bromodomain	-	no_errors
PPM1F	9647	genome.wustl.edu	36	22	20617785	20617785	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	22	20617785	20617785	A	G	SNP	PPM1F	NM_014634	human	genbank	54_36p	-1	reviewed	missense	c.725	p.F242S	0.992	HMMPfam_PP2C	HMMPfam_PP2C,superfamily_Protein serine/threonine phosphatase 2C catalytic domain	-	no_errors
PHF21B	112885	genome.wustl.edu	36	22	43670621	43670621	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	22	43670621	43670621	C	T	SNP	PHF21B	NM_138415	human	genbank	54_36p	-1	validated	missense	c.838	p.A280T	1	NULL	HMMPfam_PHD;superfamily_FYVE/PHD zinc finger	-	no_errors
TTLL8	164714	genome.wustl.edu	36	22	48821802	48821802	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	22	48821802	48821802	T	C	SNP	TTLL8	NM_001080447	human	genbank	54_36p	-1	provisional	missense	c.862	p.I288V		NULL	-	-	no_errors
MOV10L1	54456	genome.wustl.edu	36	22	48906086	48906086	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	22	48906086	48906086	G	T	SNP	MOV10L1	NM_018995	human	genbank	54_36p	1	reviewed	missense	c.1708	p.V570F	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ARHGAP31	57514	genome.wustl.edu	36	3	120615793	120615793	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	120615793	120615793	A	C	SNP	CDGAP	NM_020754	human	genbank	54_36p	1	reviewed	missense	c.2327	p.N776T	0.02	NULL	-	-	no_errors
HPS3	84343	genome.wustl.edu	36	3	150368384	150368384	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	150368384	150368384	A	C	SNP	HPS3	NM_032383	human	genbank	54_36p	1	reviewed	missense	c.2811	p.K937N	1	NULL	-	-	no_errors
CP	1356	genome.wustl.edu	36	3	150413013	150413013	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	150413013	150413013	A	G	SNP	CP	NM_000096	human	genbank	54_36p	-1	reviewed	silent	c.309	p.D103	0.04	HMMPfam_Cu-oxidase_3	superfamily_Cupredoxins;HMMPfam_Cu-oxidase_2;HMMPfam_Cu-oxidase_3;HMMPfam_Cu-oxidase	-	no_errors
LRCH3	84859	genome.wustl.edu	36	3	199043532	199043532	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	199043532	199043532	G	C	SNP	LRCH3	NM_032773	human	genbank	54_36p	1	provisional	missense	c.1049	p.R350T	1	NULL	HMMPfam_LRR_1;superfamily_Calponin-homology domain CH-domain;superfamily_L domain-like	-	no_errors
AZI2	64343	genome.wustl.edu	36	3	28355111	28355111	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	28355111	28355111	C	G	SNP	AZI2	NM_022461	human	genbank	54_36p	-1	validated	splice_site	c.217-1	e2-1	1	-	-	-	no_errors
CNTN4	152330	genome.wustl.edu	36	3	3005054	3005054	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	3005054	3005054	C	T	SNP	CNTN4	NM_175607	human	genbank	54_36p	1	reviewed	missense	c.1384	p.L462F	1	HMMPfam_I-set	fn3;HMMPfam_fn3;I-set;HMMPfam_I-set;ig;HMMPfam_ig	-	no_errors
SCN10A	6336	genome.wustl.edu	36	3	38768977	38768977	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	38768977	38768977	G	A	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	missense	c.1492	p.R498W	0.877	NULL	-	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49670021	49670021	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	3	49670021	49670021	G	A	SNP	BSN	NM_003458	human	genbank	54_36p	1	validated	silent	c.8028	p.T2676	0.7	NULL	HMMPfam_zf-piccolo;superfamily_Actin-crosslinking proteins;superfamily_FYVE/PHD zinc finger	-	no_errors
CENPE	1062	genome.wustl.edu	36	4	104249486	104249486	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	4	104249486	104249486	A	G	SNP	CENPE	NM_001813	human	genbank	54_36p	-1	validated	missense	c.7934	p.F2645S	0.15	NULL	HMMPfam_Kinesin;superfamily_Domain of the SRP/SRP receptor G-proteins;superfamily_STAT;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MGST2	4258	genome.wustl.edu	36	4	140844720	140844720	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	4	140844720	140844720	A	T	SNP	MGST2	NM_002413	human	genbank	54_36p	1	reviewed	missense	c.412	p.N138Y	0.01	NULL	HMMPfam_MAPEG	-	no_errors
INPP4B	8821	genome.wustl.edu	36	4	143262846	143262846	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	4	143262846	143262846	C	A	SNP	INPP4B	NM_001101669	human	genbank	54_36p	-1	reviewed	missense	c.2020	p.D674Y	1	NULL	-	-	no_errors
AASDH	132949	genome.wustl.edu	36	4	56899386	56899386	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	4	56899386	56899386	A	G	SNP	AASDH	NM_181806	human	genbank	54_36p	-1	validated	missense	c.3236	p.I1079T	0.99	NULL	-	-	no_errors
SLC4A4	8671	genome.wustl.edu	36	4	72535849	72535849	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	4	72535849	72535849	A	T	SNP	SLC4A4	NM_001098484	human	genbank	54_36p	1	reviewed	missense	c.1289	p.H430L	1	NULL	-	-	no_errors
PCDHB18	54660	genome.wustl.edu	36	5	140595205	140595205	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	5	140595205	140595205	G	A	SNP	PCDHB18	ENST00000274705	human	ensembl	54_36p	1	known	missense	c.736	p.E246K	0.99	NULL	-	-	no_errors
HK3	3101	genome.wustl.edu	36	5	176255732	176255732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	5	176255732	176255732	C	T	SNP	HK3	NM_002115	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12E		NULL	HMMPfam_Hexokinase_1;HMMPfam_Hexokinase_2;superfamily_Actin-like ATPase domain	-	no_errors
SPEF2	79925	genome.wustl.edu	36	5	35809758	35809758	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	5	35809758	35809758	C	T	SNP	SPEF2	NM_024867	human	genbank	54_36p	1	validated	missense	c.3956	p.S1319L	0.02	NULL	-	-	no_errors
LAMA2	3908	genome.wustl.edu	36	6	129754469	129754469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	129754469	129754469	G	A	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.5212	p.E1738K	1	HMMPfam_Laminin_I	HMMPfam_Laminin_B;HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Prefoldin;HMMPfam_Laminin_I;HMMPfam_Laminin_II;HMMPfam_Laminin_G_1;HMMPfam_Laminin_G_2;superfamily_ADP-ribosylation;superfamily_EGF/Laminin	-	no_errors
HLA-A	3105	genome.wustl.edu	36	6	30018561	30018576	+	Frame_Shift_Del	DEL	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-		Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	30018561	30018576	GCGGGGAGCCCCGCTT	-	DEL	HLA-A	NM_002116	human	genbank	54_36p	1	reviewed	frame_shift_del	c.122_137	p.R41fs	0.001:0.001:0.003:0.003:0.002:0.000:0.000:0.000:0.002:0.002:0.000:0.000:0.000:0.001:0.006:0.008	NULL	-	(deletion:cds_exon[30018513,30018782])	no_errors
SRPK1	6732	genome.wustl.edu	36	6	35945246	35945246	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	35945246	35945246	C	T	SNP	SRPK1	NM_003137	human	genbank	54_36p	-1	reviewed	missense	c.1402	p.D468N	0.96	HMMPfam_Pkinase	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
SLC26A8	116369	genome.wustl.edu	36	6	36019678	36019678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	36019678	36019678	C	T	SNP	SLC26A8	NM_052961	human	genbank	54_36p	-1	reviewed	missense	c.2890	p.G964S		NULL	HMMPfam_STAS;superfamily_Anti-sigma factor antagonist SpoIIaa;HMMPfam_Sulfate_transp	-	no_errors
ZFAND3	60685	genome.wustl.edu	36	6	38192432	38192432	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	38192432	38192432	G	T	SNP	ZFAND3	NM_021943	human	genbank	54_36p	1	validated	silent	c.468	p.R156	0.98	NULL	-	-	no_errors
UBR2	23304	genome.wustl.edu	36	6	42681509	42681509	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	42681509	42681509	T	C	SNP	UBR2	NM_015255	human	genbank	54_36p	1	provisional	silent	c.735	p.T245	0.99	NULL	-	-	no_errors
LOC442153	442153	genome.wustl.edu	36	6	4648032	4648032	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	4648032	4648032	A	G	SNP	LOC442153	XR_016425	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CD2AP	23607	genome.wustl.edu	36	6	47681952	47681952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	47681952	47681952	C	T	SNP	CD2AP	NM_012120	human	genbank	54_36p	1	reviewed	missense	c.1510	p.R504C	1	NULL	HMMPfam_SH3_1;superfamily_SH3-domain	-	no_errors
C6orf167	253714	genome.wustl.edu	36	6	97727664	97727664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	6	97727664	97727664	C	G	SNP	C6orf167	NM_198468	human	genbank	54_36p	-1	predicted	missense	c.2835	p.M945I	1	NULL	-	-	no_errors
ENSG00000166104	0	genome.wustl.edu	36	15	60326813	60326813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	15	60326813	60326813	C	T	SNP	ENSG00000166104	ENST00000299125	human	ensembl	54_36p	-1	known	missense	c.251	p.R84Q	0.09	NULL	-	-	no_start_codon
PIK3CG	5294	genome.wustl.edu	36	7	106296377	106296377	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	7	106296377	106296377	C	A	SNP	PIK3CG	NM_002649	human	genbank	54_36p	1	reviewed	missense	c.1135	p.L379I	1	HMMPfam_PI3K_C2	PI3K_rbd;HMMPfam_PI3K_rbd;PI3_PI4_kinase;HMMPfam_PI3_PI4_kinase;PI3Ka;HMMPfam_PI3Ka;PI3K_C2;HMMPfam_PI3K_C2	-	no_errors
SLC37A3	84255	genome.wustl.edu	36	7	139728729	139728729	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	7	139728729	139728729	C	T	SNP	SLC37A3	NM_207113	human	genbank	54_36p	-1	validated	missense	c.67	p.V23M	0.84	NULL	HMMPfam_MFS_1;superfamily_MFS general substrate transporter	-	no_errors
OR2F1	26211	genome.wustl.edu	36	7	143288443	143288443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	7	143288443	143288443	G	T	SNP	OR2F1	NM_012369	human	genbank	54_36p	1	provisional	missense	c.447	p.W149C	0.99	NULL	-	-	no_errors
CNTNAP2	26047	genome.wustl.edu	36	7	146460357	146460357	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	7	146460357	146460357	A	C	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.1171	p.N391H	0.02	NULL	HMMPfam_F5_F8_type_C;HMMPfam_EGF;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47843084	47843084	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	7	47843084	47843084	G	C	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.5903	p.A1968G	0.06	NULL	-	-	no_errors
LOC647415	647415	genome.wustl.edu	36	7	6931827	6931827	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	7	6931827	6931827	C	A	SNP	LOC647415	XR_037564	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
ZSCAN21	7589	genome.wustl.edu	36	7	99499717	99499717	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	7	99499717	99499717	C	G	SNP	ZSCAN21	NM_145914	human	genbank	54_36p	1	validated	silent	c.963	p.T321		HMMPfam_zf-C2H2	HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ADAM2	2515	genome.wustl.edu	36	8	39721571	39721571	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	8	39721571	39721571	T	A	SNP	ADAM2	NM_001464	human	genbank	54_36p	-1	reviewed	splice_site	c.2175-2	e20-2	0.7	-	-	-	no_errors
OPRK1	4986	genome.wustl.edu	36	8	54304520	54304520	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	8	54304520	54304520	A	G	SNP	OPRK1	NM_000912	human	genbank	54_36p	-1	validated	missense	c.1033	p.C345R	1	NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
FAM90A10	441328	genome.wustl.edu	36	8	7664674	7664674	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	8	7664674	7664674	C	A	SNP	FAM90A10	XM_496957	human	genbank	54_36p	1	model	missense	c.272	p.A91D	0	NULL	-	-	no_errors
DMRT2	10655	genome.wustl.edu	36	9	1046470	1046470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	9	1046470	1046470	C	G	SNP	DMRT2	NM_181872	human	genbank	54_36p	1	validated	missense	c.883	p.P295A	0.01	NULL	HMMPfam_DM;superfamily_Cysteine-rich DNA binding domain (DM domain)	-	no_errors
MAPKAP1	79109	genome.wustl.edu	36	9	127270182	127270182	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	9	127270182	127270182	T	C	SNP	MAPKAP1	NM_001006617	human	genbank	54_36p	-1	reviewed	missense	c.1235	p.D412G	1	HMMPfam_SIN1	HMMPfam_SIN1	-	no_errors
IFNB1	3456	genome.wustl.edu	36	9	21067536	21067536	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	9	21067536	21067536	A	T	SNP	IFNB1	NM_002176	human	genbank	54_36p	-1	validated	missense	c.333	p.N111K		HMMPfam_Interferon	HMMPfam_Interferon;superfamily_4-helical cytokines	-	no_errors
AGTPBP1	23287	genome.wustl.edu	36	9	87390234	87390234	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	9	87390234	87390234	T	A	SNP	AGTPBP1	NM_015239	human	genbank	54_36p	-1	validated	silent	c.3009	p.A1003		HMMPfam_Peptidase_M14	HMMPfam_Peptidase_M14;superfamily_ARM repeat;superfamily_Zn-dependent exopeptidases	-	no_errors
CXorf57	55086	genome.wustl.edu	36	X	105755132	105755132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	X	105755132	105755132	C	T	SNP	CXorf57	NM_018015	human	genbank	54_36p	1	validated	missense	c.943	p.P315S	0.96	NULL	superfamily_Nucleic acid-binding proteins	-	no_errors
ZNF711	7552	genome.wustl.edu	36	X	84413035	84413035	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	X	84413035	84413035	T	C	SNP	ZNF711	NM_021998	human	genbank	54_36p	1	reviewed	missense	c.1831	p.S611P	1	HMMPfam_zf-C2H2	HMMPfam_Zfx_Zfy_act;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100132243	100132243	genome.wustl.edu	36	X	9339130	9339130	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4d3fab96-bc22-48d0-a3ef-1844ad894d0f	e0bcad8c-d151-47f7-8236-e274a281c56e	X	9339130	9339130	G	C	SNP	LOC100132243	XR_037396	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
