Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
DLGAP2	9228	genome.wustl.edu	36	8	1636931	1636931	+	Silent	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	8	1636931	1636931	C	T	SNP	DLGAP2	NM_004745	human	genbank	54_36p	+1	reviewed	silent	c.2880	p.R960	0.499	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
ZNF594	84622	genome.wustl.edu	36	17	5026919	5026919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	17	5026919	5026919	C	T	SNP	ZNF594	NM_032530	human	genbank	54_36p	-1	validated	missense	c.1357	p.V453I	0.052	superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DNM2	1785	genome.wustl.edu	36	19	10796805	10796805	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	19	10796805	10796805	A	G	SNP	DNM2	NM_001005360	human	genbank	54_36p	+1	reviewed	missense	c.1966	p.I656V	1.000	HMMPfam_GED,HMMSmart_SM00302	HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302	-	no_errors
PDIA6	10130	genome.wustl.edu	36	2	10842549	10842549	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	2	10842549	10842549	T	C	SNP	PDIA6	NM_005742	human	genbank	54_36p	-1	validated	missense	c.1216	p.I406V	0.907	NULL	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
MAK	4117	genome.wustl.edu	36	6	10872798	10872798	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	6	10872798	10872798	C	T	SNP	MAK	NM_005906	human	genbank	54_36p	-1	reviewed	missense	c.1745	p.R582Q	0.999	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GRIN2B	2904	genome.wustl.edu	36	12	13659724	13659724	+	Silent	SNP	G	G	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	12	13659724	13659724	G	T	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	silent	c.1470	p.I490	1.000	superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17282826	17282826	+	Silent	SNP	T	T	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	1	17282826	17282826	T	A	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	silent	c.1032	p.R344	0.968	HMMPfam_PAD,superfamily_SSF55909	HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909	-	no_errors
SHMT1	6470	genome.wustl.edu	36	17	18174603	18174603	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	17	18174603	18174603	T	A	SNP	SHMT1	NM_004169	human	genbank	54_36p	-1	reviewed	missense	c.1162	p.T388S	1.000	superfamily_PLP-dependent transferases,HMMPfam_SHMT	superfamily_PLP-dependent transferases,HMMPfam_SHMT,PatternScan_SHMT	-	no_errors
C14orf94	54930	genome.wustl.edu	36	14	22490694	22490694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	14	22490694	22490694	C	T	SNP	C14orf94	NM_017815	human	genbank	54_36p	-1	predicted	missense	c.375	p.M125I	0.001	NULL	NULL	-	no_errors
MTMR6	9107	genome.wustl.edu	36	13	24721461	24721461	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	13	24721461	24721461	T	A	SNP	MTMR6	NM_004685	human	genbank	54_36p	-1	validated	missense	c.1775	p.D592V	1.000	NULL	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
MTMR6	9107	genome.wustl.edu	36	13	24721558	24721558	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	13	24721558	24721558	C	A	SNP	MTMR6	NM_004685	human	genbank	54_36p	-1	validated	nonsense	c.1678	p.E560*	0.273	NULL	HMMSmart_SM00404,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RARB	5915	genome.wustl.edu	36	3	25597188	25597188	+	Silent	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	3	25597188	25597188	C	T	SNP	RARB	NM_000965	human	genbank	54_36p	+1	reviewed	silent	c.757	p.L253	1.000	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
LOC729862	729862	genome.wustl.edu	36	5	28963133	28963133	+	RNA	SNP	C	C	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	5	28963133	28963133	C	G	SNP	LOC729862	XR_040872	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.948	-	-	-	no_errors
LOC92755	92755	genome.wustl.edu	36	8	30329300	30329300	+	RNA	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	8	30329300	30329300	G	A	SNP	LOC92755	XR_016140	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TEX15	56154	genome.wustl.edu	36	8	30821551	30821551	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	8	30821551	30821551	T	G	SNP	TEX15	NM_031271	human	genbank	54_36p	-1	validated	missense	c.4525	p.T1509P	0.021	NULL	NULL	-	no_errors
C6orf25	80739	genome.wustl.edu	36	6	31799692	31799692	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	6	31799692	31799692	T	C	SNP	C6orf25	NM_138272	human	genbank	54_36p	+1	reviewed	missense	c.359	p.L120P	0.987	NULL	NULL	-	no_errors
ADAM2	2515	genome.wustl.edu	36	8	39726035	39726035	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	8	39726035	39726035	A	G	SNP	ADAM2	NM_001464	human	genbank	54_36p	-1	reviewed	missense	c.1967	p.I656T	0.978	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2"	-	no_errors
USP9X	8239	genome.wustl.edu	36	X	40873286	40873286	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	X	40873286	40873286	T	A	SNP	USP9X	NM_001039590	human	genbank	54_36p	+1	reviewed	missense	c.186	p.D62E	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ENSG00000187451	0	genome.wustl.edu	36	17	42482485	42482485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	17	42482485	42482485	C	T	SNP	ENSG00000187451	ENST00000309965	human	ensembl	54_36p	+1	known	silent	c.153	p.D51	0.000	NULL	NULL	-	no_errors
ZDHHC3	51304	genome.wustl.edu	36	3	44943341	44943341	+	Silent	SNP	T	T	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	3	44943341	44943341	T	A	SNP	ZDHHC3	NM_016598	human	genbank	54_36p	-1	validated	silent	c.828	p.G276	1.000	NULL	HMMPfam_zf-DHHC	-	no_errors
PHF21A	51317	genome.wustl.edu	36	11	45943589	45943589	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	11	45943589	45943589	G	C	SNP	PHF21A	NM_001101802	human	genbank	54_36p	-1	validated	missense	c.846	p.H282Q	1.000	NULL	HMMPfam_AT_hook,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
PPYR1	5540	genome.wustl.edu	36	10	46507581	46507581	+	Silent	SNP	T	T	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	10	46507581	46507581	T	C	SNP	PPYR1	NM_005972	human	genbank	54_36p	+1	validated	silent	c.792	p.N264	0.017	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49560740	49560740	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	15	49560740	49560740	C	T	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	nonsense	c.5855	p.W1952*	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
PPP1R13L	10848	genome.wustl.edu	36	19	50591481	50591481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	19	50591481	50591481	C	A	SNP	PPP1R13L	NM_006663	human	genbank	54_36p	-1	validated	missense	c.766	p.D256Y	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
ITGB7	3695	genome.wustl.edu	36	12	51873400	51873400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	12	51873400	51873400	C	T	SNP	ITGB7	NM_000889	human	genbank	54_36p	-1	provisional	missense	c.1517	p.R506H	0.083	superfamily_EGF/Laminin,PatternScan_EGF_1	HMMSmart_SM00423,HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_INTEGRIN_BETA,HMMPfam_EGF_2,PatternScan_EGF_2,PatternScan_4FE4S_FER_1,superfamily_Integrin beta tail domain,HMMPfam_Integrin_B_tail,HMMPfam_Integrin_b_cyt	-	no_errors
FGF21	26291	genome.wustl.edu	36	19	53951506	53951506	+	Silent	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	19	53951506	53951506	G	A	SNP	FGF21	NM_019113	human	genbank	54_36p	+1	reviewed	silent	c.201	p.G67	0.927	HMMSmart_FGF,superfamily_Cytok_IL1_like,HMMPfam_FGF	HMMSmart_FGF,superfamily_Cytok_IL1_like,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55666813	55666813	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	4	55666813	55666813	A	T	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	missense	c.1588	p.C530S	1.000	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LEPR	3953	genome.wustl.edu	36	1	65840217	65840217	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	1	65840217	65840217	A	T	SNP	LEPR	NM_002303	human	genbank	54_36p	+1	validated	missense	c.1389	p.Q463H	1.000	superfamily_Fibronectin type III	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1,HMMPfam_Lep_receptor_Ig,PatternScan_HEMATOPO_REC_L_F2	-	no_errors
ANKRD20A4	728747	genome.wustl.edu	36	9	68711803	68711803	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	9	68711803	68711803	G	C	SNP	ANKRD20A4	NM_001098805	human	genbank	54_36p	+1	inferred	missense	c.1447	p.V483L	0.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
GDPD2	54857	genome.wustl.edu	36	X	69563735	69563735	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	X	69563735	69563735	G	T	SNP	GDPD2	NM_017711	human	genbank	54_36p	+1	provisional	missense	c.726	p.M242I	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD	superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD	-	no_errors
MXD1	4084	genome.wustl.edu	36	2	69996008	69996008	+	Silent	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	2	69996008	69996008	G	A	SNP	MXD1	NM_002357	human	genbank	54_36p	+1	reviewed	silent	c.42	p.E14	1.000	NULL	HMMPfam_HLH,superfamily_HLH_basic,HMMSmart_HLH	-	no_errors
CXCR3	2833	genome.wustl.edu	36	X	70753684	70753684	+	Silent	SNP	A	A	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	X	70753684	70753684	A	T	SNP	CXCR3	NM_001504	human	genbank	54_36p	-1	reviewed	silent	c.363	p.S121	0.148	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
RASGRF1	5923	genome.wustl.edu	36	15	77041567	77041567	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	15	77041567	77041567	G	A	SNP	RASGRF1	NM_002891	human	genbank	54_36p	-1	reviewed	nonsense	c.3796	p.R1266*	0.994	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
ADAMTSL3	57188	genome.wustl.edu	36	15	82330703	82330703	+	Silent	SNP	T	T	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	15	82330703	82330703	T	C	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	+1	validated	silent	c.948	p.D316	0.998	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC	-	no_errors
ABHD2	11057	genome.wustl.edu	36	15	87495987	87495987	+	Silent	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	15	87495987	87495987	G	A	SNP	ABHD2	NM_007011	human	genbank	54_36p	+1	reviewed	silent	c.270	p.R90	0.999	NULL	superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_UPF0017	-	no_errors
CHD2	1106	genome.wustl.edu	36	15	91268713	91268713	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	15	91268713	91268713	A	G	SNP	CHD2	NM_001271	human	genbank	54_36p	+1	reviewed	missense	c.221	p.K74R	1.000	NULL	HMMSmart_SM00298,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_Chromo domain-like,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Homeodomain-like	-	no_errors
SMURF1	57154	genome.wustl.edu	36	7	98481312	98481312	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	7	98481312	98481312	G	A	SNP	SMURF1	NM_020429	human	genbank	54_36p	-1	reviewed	missense	c.1279	p.R427W	0.955	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
RGAG1	57529	genome.wustl.edu	36	X	109583519	109583519	+	Silent	SNP	A	A	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	X	109583519	109583519	A	C	SNP	RGAG1	NM_020769	human	genbank	54_36p	+1	provisional	silent	c.3018	p.T1006	0.000	NULL	HMMPfam_Retrotrans_gag	-	no_errors
AMOT	154796	genome.wustl.edu	36	X	111909049	111909049	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	X	111909049	111909049	C	A	SNP	AMOT	NM_133265	human	genbank	54_36p	-1	reviewed	missense	c.1762	p.A588S	0.997	NULL	NULL	-	no_errors
ITGB5	3693	genome.wustl.edu	36	3	126010597	126010597	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	3	126010597	126010597	C	A	SNP	ITGB5	NM_002213	human	genbank	54_36p	-1	provisional	missense	c.1225	p.G409C	1.000	HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF69179	HMMSmart_PSI,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,HMMSmart_VWA,superfamily_SSF69179,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,HMMSmart_EGF,superfamily_Integrin_bsu_tail,HMMPfam_Integrin_B_tail,HMMPfam_Integrin_b_cyt	-	no_errors
LRRC8A	56262	genome.wustl.edu	36	9	130710842	130710842	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	9	130710842	130710842	C	G	SNP	LRRC8A	NM_019594	human	genbank	54_36p	+1	reviewed	missense	c.1578	p.N526K	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors
MRPL3	11222	genome.wustl.edu	36	3	132664369	132664369	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	3	132664369	132664369	T	C	SNP	MRPL3	NM_007208	human	genbank	54_36p	-1	reviewed	missense	c.935	p.K312R	0.401	superfamily_Translation proteins	superfamily_Translation proteins,HMMPfam_Ribosomal_L3,PatternScan_RIBOSOMAL_L3	-	no_errors
ZNF806	646915	genome.wustl.edu	36	2	132791570	132791570	+	Silent	SNP	C	C	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	2	132791570	132791570	C	A	SNP	ZNF806	XM_001724242	human	genbank	54_36p	+1	model	silent	c.561	p.T187	0.020	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
COL5A1	1289	genome.wustl.edu	36	9	136722745	136722745	+	Silent	SNP	T	T	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	9	136722745	136722745	T	G	SNP	COL5A1	NM_000093	human	genbank	54_36p	+1	reviewed	silent	c.276	p.P92	1.000	HMMSmart_TSPN,superfamily_ConA_like_lec_gl	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
MCF2	4168	genome.wustl.edu	36	X	138497570	138497570	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	X	138497570	138497570	C	A	SNP	MCF2	NM_001099855	human	genbank	54_36p	-1	validated	missense	c.2673	p.K891N	0.012	NULL	HMMSmart_SEC14,superfamily_Spectrin,HMMSmart_SPEC,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
PCDHA2	56146	genome.wustl.edu	36	5	140155559	140155559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	5	140155559	140155559	G	A	SNP	PCDHA2	NM_018905	human	genbank	54_36p	+1	reviewed	missense	c.826	p.E276K	0.098	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHAC1	56135	genome.wustl.edu	36	5	140286940	140286940	+	Silent	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	5	140286940	140286940	C	T	SNP	PCDHAC1	NM_018898	human	genbank	54_36p	+1	reviewed	silent	c.279	p.C93	0.033	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHB9	56127	genome.wustl.edu	36	5	140548644	140548644	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	5	140548644	140548644	C	T	SNP	PCDHB9	NM_019119	human	genbank	54_36p	+1	reviewed	missense	c.1568	p.P523L	0.001	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KEL	3792	genome.wustl.edu	36	7	142350787	142350787	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	7	142350787	142350787	C	A	SNP	KEL	NM_000420	human	genbank	54_36p	-1	reviewed	missense	c.1611	p.W537C	0.760	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
PDE4DIP	9659	genome.wustl.edu	36	1	143642285	143642285	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	1	143642285	143642285	T	A	SNP	PDE4DIP	NM_001002811	human	genbank	54_36p	-1	validated	missense	c.781	p.T261S	0.000	NULL	superfamily_SSF57716	-	no_errors
CYP11B2	1585	genome.wustl.edu	36	8	143991752	143991752	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	8	143991752	143991752	C	G	SNP	CYP11B2	NM_000498	human	genbank	54_36p	-1	reviewed	missense	c.1072	p.A358P	0.004	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
PI4KB	5298	genome.wustl.edu	36	1	149555219	149555219	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	1	149555219	149555219	C	G	SNP	PI4KB	NM_002651	human	genbank	54_36p	-1	provisional	missense	c.399	p.Q133H	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
F8	2157	genome.wustl.edu	36	X	153811279	153811279	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	X	153811279	153811279	G	A	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	missense	c.3980	p.T1327M	0.000	NULL	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
PLD1	5337	genome.wustl.edu	36	3	172845438	172845438	+	Silent	SNP	G	G	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	3	172845438	172845438	G	T	SNP	PLD1	NM_002662	human	genbank	54_36p	-1	validated	silent	c.2499	p.T833	0.327	superfamily_Phospholipase D/nuclease	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155	-	no_errors
POLR2H	5437	genome.wustl.edu	36	3	185564044	185564044	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	3	185564044	185564044	C	T	SNP	POLR2H	NM_006232	human	genbank	54_36p	+1	reviewed	nonsense	c.70	p.R24*	1.000	superfamily_Nucleic acid-binding proteins,HMMSmart_SM00658,HMMPfam_RNA_pol_Rpb8	superfamily_Nucleic acid-binding proteins,HMMSmart_SM00658,HMMPfam_RNA_pol_Rpb8	-	no_errors
C1orf116	79098	genome.wustl.edu	36	1	205264887	205264887	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	1	205264887	205264887	C	T	SNP	C1orf116	NM_023938	human	genbank	54_36p	-1	validated	missense	c.251	p.R84Q	0.000	NULL	NULL	-	no_errors
DLGAP2	9228	genome.wustl.edu	36	8	1636857	1636868	+	In_Frame_Del	DEL	CGCCAGGAAGCC	CGCCAGGAAGCC	-	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	CGCCAGGAAGCC	CGCCAGGAAGCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	8	1636857	1636868	CGCCAGGAAGCC	-	DEL	DLGAP2	NM_004745	human	genbank	54_36p	+1	reviewed	in_frame_del	c.2806_2817	p.QEAR937in_frame_del	0.999:0.997:0.207:0.984:0.998:1.000:1.000:1.000:0.998:1.000:1.000:0.834	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519187	7519192	+	In_Frame_Del	DEL	GCGGGT	GCGGGT	-	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	GCGGGT	GCGGGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	17	7519187	7519192	GCGGGT	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.468_463	p.TR155in_frame_del	0.002:0.005:0.005:0.007:0.002:0.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
MPHOSPH8	54737	genome.wustl.edu	36	13	19119098	19119098	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	13	19119098	19119098	T	-	DEL	MPHOSPH8	NM_017520	human	genbank	54_36p	+1	provisional	frame_shift_del	c.885	p.S295fs	0.001	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
TMEM196	256130	genome.wustl.edu	36	7	19731911	19731937	+	Splice_Site	DEL	GATCATCTGATAAGAAAAAGAAAGGCA	GATCATCTGATAAGAAAAAGAAAGGCA	-	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	GATCATCTGATAAGAAAAAGAAAGGCA	GATCATCTGATAAGAAAAAGAAAGGCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	7	19731911	19731937	GATCATCTGATAAGAAAAAGAAAGGCA	-	DEL	TMEM196	NM_152774	human	genbank	54_36p	-1	validated	splice_site_del	c.1-21_47	e1-1	0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.983:0.003:0.001:0.000:0.001:0.001:0.016:0.047:0.005:0.031:0.035:0.014:0.005:0.006:0.009:0.001:0.000:0.000:0.000	-	-	-	no_errors
ZFYVE19	84936	genome.wustl.edu	36	15	38887191	38887192	+	Frame_Shift_Ins	INS	-	-	GGGGC	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	15	38887191	38887192	-	GGGGC	INS	ZFYVE19	NM_001077268	human	genbank	54_36p	+1	validated	frame_shift_ins	c.112_113	p.A42fs	0.027:0.013	NULL	HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger,HMMPfam_FYVE,PatternScan_2FE2S_FER_1	-	no_errors
CDC20	991	genome.wustl.edu	36	1	43597998	43598020	+	Frame_Shift_Del	DEL	TGGGCTTTGAACCTGAACGGTTT	TGGGCTTTGAACCTGAACGGTTT	-	novel	unknown	TCGA-13-2071-01A-02D-1526-09	TCGA-13-2071-10A-01D-1526-09	TGGGCTTTGAACCTGAACGGTTT	TGGGCTTTGAACCTGAACGGTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0a32c719-3328-477f-bb95-961de294e4c4	6a0e1ff5-9461-49c7-90a4-6e4ce55f189b	1	43597998	43598020	TGGGCTTTGAACCTGAACGGTTT	-	DEL	CDC20	NM_001255	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.346_368	p.W116fs	1.000:1.000:1.000:1.000:0.997:0.593:0.587:0.867:0.895:0.903:0.901:0.888:0.994:1.000:0.997:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000	superfamily_WD40_like	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
