Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
PPAPDC2	403313	genome.wustl.edu	36	9	4653149	4653149	+	Silent	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	9	4653149	4653149	C	G	SNP	PPAPDC2	NM_203453	human	genbank	54_36p	+1	validated	silent	c.774	p.V258	1.000	superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2	superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2	-	no_errors
VWF	7450	genome.wustl.edu	36	12	5933023	5933023	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	5933023	5933023	T	G	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	splice_site	c.7888-2	e47-2	0.967	-	-	-	no_errors
SLC25A23	79085	genome.wustl.edu	36	19	6407044	6407044	+	Silent	SNP	T	A	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	19	6407044	6407044	T	A	SNP	SLC25A23	ENST00000264088	human	ensembl	54_36p	-1	known	silent	c.543	p.S181	0.000	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	17	7517830	7517830	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.833	p.P278L	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
NLRP10	338322	genome.wustl.edu	36	11	7938973	7938973	+	Silent	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	7938973	7938973	C	T	SNP	NLRP10	NM_176821	human	genbank	54_36p	-1	reviewed	silent	c.762	p.L254	0.265	superfamily_SSF52540,HMMPfam_NACHT	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT	-	no_errors
SLC2A3	6515	genome.wustl.edu	36	12	7975180	7975180	+	Silent	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	7975180	7975180	C	T	SNP	SLC2A3	NM_006931	human	genbank	54_36p	-1	validated	silent	c.438	p.S146	0.910	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
MRVI1	10335	genome.wustl.edu	36	11	10604605	10604605	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	10604605	10604605	C	G	SNP	MRVI1	NM_001098579	human	genbank	54_36p	-1	reviewed	missense	c.825	p.E275D	0.116	NULL	HMMPfam_MRVI1	-	no_errors
ZNF564	163050	genome.wustl.edu	36	19	12499047	12499047	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	19	12499047	12499047	G	C	SNP	ZNF564	NM_144976	human	genbank	54_36p	-1	validated	missense	c.875	p.S292C	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors
GUCY2C	2984	genome.wustl.edu	36	12	14718955	14718955	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	14718955	14718955	G	A	SNP	GUCY2C	NM_004963	human	genbank	54_36p	-1	validated	nonsense	c.955	p.R319*	0.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
EMR2	30817	genome.wustl.edu	36	19	14723249	14723249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	19	14723249	14723249	G	A	SNP	EMR2	NM_013447	human	genbank	54_36p	-1	reviewed	missense	c.2023	p.R675C	0.020	HMMPfam_7tm_2	HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	16917181	16917181	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	10	16917181	16917181	G	C	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.10200	p.H3400Q	0.788	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
PEX26	55670	genome.wustl.edu	36	22	16947998	16947998	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	22	16947998	16947998	G	T	SNP	PEX26	NM_017929	human	genbank	54_36p	+1	reviewed	missense	c.788	p.C263F	1.000	HMMPfam_Pex26	HMMPfam_Pex26	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17191711	17191711	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	10	17191711	17191711	G	T	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.1045	p.L349I	0.036	superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
LLGL1	3996	genome.wustl.edu	36	17	18082169	18082169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	17	18082169	18082169	C	T	SNP	LLGL1	NM_004140	human	genbank	54_36p	+1	reviewed	silent	c.1968	p.L656	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_LLGL,HMMPfam_WD40	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18649365	18649365	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	13	18649365	18649365	G	C	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.758	p.T253R	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
LOC643668	643668	genome.wustl.edu	36	12	18737878	18737878	+	RNA	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	18737878	18737878	G	C	SNP	LOC643668	XR_016986	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SYT17	51760	genome.wustl.edu	36	16	19143611	19143611	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	16	19143611	19143611	G	C	SNP	SYT17	NM_016524	human	genbank	54_36p	+1	validated	missense	c.1178	p.S393T	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
SLC47A1	55244	genome.wustl.edu	36	17	19421378	19421378	+	Silent	SNP	C	C	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	17	19421378	19421378	C	A	SNP	SLC47A1	NM_018242	human	genbank	54_36p	+1	validated	silent	c.1633	p.R545	0.003	NULL	HMMPfam_MatE	-	no_errors
PDILT	204474	genome.wustl.edu	36	16	20279469	20279469	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	16	20279469	20279469	A	T	SNP	PDILT	NM_174924	human	genbank	54_36p	-1	provisional	nonsense	c.1428	p.Y476*	0.368	superfamily_Thiordxn-like_fd	PatternScan_THIOREDOXIN_1,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_ER_TARGET	-	no_errors
C14orf21	161424	genome.wustl.edu	36	14	23840761	23840761	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	14	23840761	23840761	C	G	SNP	C14orf21	NM_174913	human	genbank	54_36p	+1	predicted	missense	c.801	p.D267E	1.000	superfamily_ARM-type_fold,HMMSmart_Pumilio	superfamily_ARM-type_fold,HMMPfam_PUF,HMMSmart_Pumilio	-	no_errors
SUZ12	23512	genome.wustl.edu	36	17	27346842	27346842	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	17	27346842	27346842	T	A	SNP	SUZ12	NM_015355	human	genbank	54_36p	+1	reviewed	missense	c.1742	p.V581E	1.000	HMMPfam_VEFS-Box	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_VEFS-Box	-	no_errors
CHN2	1124	genome.wustl.edu	36	7	29404529	29404529	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	7	29404529	29404529	C	T	SNP	CHN2	ENST00000409350	human	ensembl	54_36p	+1	known	missense	c.143	p.S48F	1.000	NULL	NULL	-	no_errors
IL1RAPL1	11141	genome.wustl.edu	36	X	29848114	29848114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	29848114	29848114	G	A	SNP	IL1RAPL1	NM_014271	human	genbank	54_36p	+1	reviewed	missense	c.1039	p.V347I	0.999	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
EPB41L1	2036	genome.wustl.edu	36	20	34245618	34245618	+	Silent	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	20	34245618	34245618	G	A	SNP	EPB41L1	NM_012156	human	genbank	54_36p	+1	reviewed	silent	c.1371	p.E457	0.990	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors
ZNF76	7629	genome.wustl.edu	36	6	35367425	35367425	+	Silent	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	6	35367425	35367425	G	A	SNP	ZNF76	NM_003427	human	genbank	54_36p	+1	provisional	silent	c.864	p.P288	0.685	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
C1orf216	127703	genome.wustl.edu	36	1	35953999	35953999	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	1	35953999	35953999	G	A	SNP	C1orf216	NM_152374	human	genbank	54_36p	-1	predicted	missense	c.511	p.H171Y	1.000	NULL	NULL	-	no_errors
NIPBL	25836	genome.wustl.edu	36	5	37039134	37039134	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	5	37039134	37039134	A	C	SNP	NIPBL	NM_133433	human	genbank	54_36p	+1	reviewed	missense	c.3783	p.K1261N	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
RHPN2	85415	genome.wustl.edu	36	19	38204322	38204322	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	19	38204322	38204322	G	A	SNP	RHPN2	NM_033103	human	genbank	54_36p	-1	provisional	missense	c.385	p.L129F	0.630	HMMPfam_BRO1	superfamily_PKN_effector,HMMSmart_Hr1,HMMPfam_HR1,HMMPfam_BRO1,superfamily_PDZ,HMMSmart_PDZ	-	no_errors
CD300LG	146894	genome.wustl.edu	36	17	39281559	39281559	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	17	39281559	39281559	T	C	SNP	CD300LG	NM_145273	human	genbank	54_36p	+1	provisional	missense	c.151	p.C51R	1.000	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors
SLC25A38	54977	genome.wustl.edu	36	3	39400259	39400259	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	3	39400259	39400259	G	A	SNP	SLC25A38	NM_017875	human	genbank	54_36p	+1	validated	missense	c.40	p.D14N	0.991	NULL	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
ELF1	1997	genome.wustl.edu	36	13	40406159	40406159	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	13	40406159	40406159	A	T	SNP	ELF1	NM_172373	human	genbank	54_36p	-1	reviewed	missense	c.1262	p.I421K	0.996	NULL	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
TTC33	23548	genome.wustl.edu	36	5	40752226	40752226	+	Silent	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	5	40752226	40752226	T	C	SNP	TTC33	NM_012382	human	genbank	54_36p	-1	validated	silent	c.567	p.A189	0.000	NULL	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
PPHLN1	51535	genome.wustl.edu	36	12	41121391	41121391	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	41121391	41121391	G	T	SNP	PPHLN1	NM_016488	human	genbank	54_36p	+1	reviewed	missense	c.917	p.R306L	1.000	NULL	NULL	-	no_errors
BACE2	25825	genome.wustl.edu	36	21	41569392	41569392	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	21	41569392	41569392	T	C	SNP	BACE2	NM_012105	human	genbank	54_36p	+1	reviewed	missense	c.1528	p.S510P	1.000	NULL	superfamily_Acid proteases,HMMPfam_Asp,PatternScan_ASP_PROTEASE	-	no_errors
NR1H3	10062	genome.wustl.edu	36	11	47246798	47246798	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	47246798	47246798	C	G	SNP	NR1H3	NM_005693	human	genbank	54_36p	+1	validated	missense	c.1319	p.S440C	0.999	superfamily_Nuclear receptor ligand-binding domain,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_COPPER_BLUE,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
ADNP	23394	genome.wustl.edu	36	20	48944056	48944056	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	20	48944056	48944056	C	G	SNP	ADNP	NM_015339	human	genbank	54_36p	-1	reviewed	missense	c.602	p.G201A	1.000	NULL	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
LOC340970	340970	genome.wustl.edu	36	11	48964113	48964113	+	RNA	SNP	A	A	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	48964113	48964113	A	G	SNP	LOC340970	XR_042351	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MIRN1300	0	genome.wustl.edu	36	15	51017865	51017865	+	RNA	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	15	51017865	51017865	C	G	SNP	MIRN1300	ENST00000408347	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
KRT4	3851	genome.wustl.edu	36	12	51493985	51493985	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	51493985	51493985	C	A	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	missense	c.347	p.C116F	0.976	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
DKFZp564N2472	285877	genome.wustl.edu	36	7	53071742	53071742	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	7	53071742	53071742	G	T	SNP	DKFZp564N2472	NM_182595	human	genbank	54_36p	+1	validated	missense	c.884	p.G295V	0.009	NULL	NULL	-	no_errors
CCDC155	147872	genome.wustl.edu	36	19	54601979	54601979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	19	54601979	54601979	G	A	SNP	CCDC155	NM_144688	human	genbank	54_36p	+1	provisional	missense	c.823	p.D275N	0.499	NULL	NULL	-	no_errors
GPR32	2854	genome.wustl.edu	36	19	55966675	55966675	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	19	55966675	55966675	G	T	SNP	GPR32	NM_001506	human	genbank	54_36p	+1	provisional	missense	c.1006	p.A336S	0.804	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GLI1	2735	genome.wustl.edu	36	12	56146321	56146321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	56146321	56146321	G	A	SNP	GLI1	NM_005269	human	genbank	54_36p	+1	reviewed	missense	c.794	p.R265Q	1.000	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
VPS4B	9525	genome.wustl.edu	36	18	59229712	59229712	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	18	59229712	59229712	T	C	SNP	VPS4B	NM_004869	human	genbank	54_36p	-1	reviewed	missense	c.107	p.H36R	0.998	HMMSmart_SM00745,HMMPfam_MIT	HMMSmart_SM00745,HMMPfam_MIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C	-	no_errors
LOC100132529	0	genome.wustl.edu	36	16	70163483	70163483	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	16	70163483	70163483	C	T	SNP	LOC100132529	XM_001719539	human	genbank	54_36p	+1	model	missense	c.290	p.P97L	0.003	NULL	NULL	-	no_errors
CHRDL2	25884	genome.wustl.edu	36	11	74085961	74085961	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	74085961	74085961	C	G	SNP	CHRDL2	NM_015424	human	genbank	54_36p	-1	validated	missense	c.1205	p.S402T	1.000	NULL	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1	-	no_errors
ANKRD17	26057	genome.wustl.edu	36	4	74187032	74187032	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	4	74187032	74187032	C	G	SNP	ANKRD17	NM_032217	human	genbank	54_36p	-1	reviewed	missense	c.4498	p.E1500Q	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_MutS_V,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors
LOC646127	0	genome.wustl.edu	36	X	74464076	74464076	+	RNA	SNP	T	T	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	74464076	74464076	T	G	SNP	LOC646127	XR_037591	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.799	-	-	-	pseudogene
OR2AT4	341152	genome.wustl.edu	36	11	74477691	74477691	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	74477691	74477691	C	T	SNP	OR2AT4	NM_001005285	human	genbank	54_36p	-1	provisional	missense	c.716	p.R239Q	0.002	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LY96	23643	genome.wustl.edu	36	8	75101614	75101614	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	8	75101614	75101614	G	C	SNP	LY96	NM_015364	human	genbank	54_36p	+1	validated	missense	c.368	p.G123A	0.748	HMMPfam_E1_DerP2_DerF2,HMMSmart_SM00737	HMMPfam_E1_DerP2_DerF2,HMMSmart_SM00737	-	no_errors
POU3F4	5456	genome.wustl.edu	36	X	82650038	82650038	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	82650038	82650038	T	A	SNP	POU3F4	NM_000307	human	genbank	54_36p	+1	reviewed	missense	c.50	p.L17Q	1.000	NULL	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ME3	10873	genome.wustl.edu	36	11	85835168	85835168	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	85835168	85835168	T	C	SNP	ME3	NM_001014811	human	genbank	54_36p	-1	reviewed	missense	c.1390	p.I464V	1.000	HMMPfam_Malic_M,superfamily_NAD(P)-bd	superfamily_SSF53223,HMMPfam_malic,PatternScan_MALIC_ENZYMES,HMMPfam_Malic_M,superfamily_NAD(P)-bd	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87474409	87474409	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	10	87474409	87474409	G	T	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	missense	c.1538	p.A513E	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
TCF25	22980	genome.wustl.edu	36	16	88492710	88492710	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	16	88492710	88492710	C	G	SNP	TCF25	NM_014972	human	genbank	54_36p	+1	validated	missense	c.1150	p.L384V	1.000	HMMPfam_DUF654	HMMPfam_DUF654	-	no_errors
SAMD9L	219285	genome.wustl.edu	36	7	92600018	92600018	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	7	92600018	92600018	T	C	SNP	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	missense	c.3203	p.E1068G	0.313	NULL	superfamily_SAM/Pointed domain	-	no_errors
SERPINA2	390502	genome.wustl.edu	36	14	93902829	93902829	+	RNA	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	14	93902829	93902829	G	A	SNP	SERPINA2	XR_041183	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
JRKL	8690	genome.wustl.edu	36	11	95765007	95765007	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	95765007	95765007	A	C	SNP	JRKL	NM_003772	human	genbank	54_36p	+1	reviewed	missense	c.1546	p.K516Q	1.000	NULL	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100472757	100472757	+	Silent	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	7	100472757	100472757	C	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	silent	c.11340	p.Y3780	0.153	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
RIMS2	9699	genome.wustl.edu	36	8	104778666	104778666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	8	104778666	104778666	G	A	SNP	RIMS2	NM_001100117	human	genbank	54_36p	+1	validated	missense	c.353	p.R118H	0.999	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
COG5	10466	genome.wustl.edu	36	7	106725894	106725894	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	7	106725894	106725894	G	T	SNP	COG5	NM_006348	human	genbank	54_36p	-1	validated	missense	c.1335	p.D445E	0.960	NULL	HMMPfam_COG5	-	no_errors
WNT2B	7482	genome.wustl.edu	36	1	112861476	112861476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	1	112861476	112861476	G	A	SNP	WNT2B	NM_024494	human	genbank	54_36p	+1	reviewed	missense	c.892	p.D298N	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
MAGI3	260425	genome.wustl.edu	36	1	114025416	114025416	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	1	114025416	114025416	T	C	SNP	MAGI3	NM_152900	human	genbank	54_36p	+1	validated	missense	c.3263	p.I1088T	1.000	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	superfamily_PDZ,HMMSmart_PDZ,HMMSmart_GuKc,superfamily_SSF52540,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ	-	no_errors
KSR2	283455	genome.wustl.edu	36	12	116391911	116391911	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	116391911	116391911	C	G	SNP	KSR2	NM_173598	human	genbank	54_36p	-1	validated	missense	c.2422	p.E808Q	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Cysteine-rich domain,HMMSmart_SM00109,HMMPfam_C1_1,PatternScan_ZF_DAG_PE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TAOK3	51347	genome.wustl.edu	36	12	117074514	117074514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	12	117074514	117074514	G	A	SNP	TAOK3	NM_016281	human	genbank	54_36p	-1	validated	silent	c.2436	p.Y812	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NKRF	55922	genome.wustl.edu	36	X	118608156	118608156	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	118608156	118608156	T	A	SNP	NKRF	NM_017544	human	genbank	54_36p	-1	validated	missense	c.1260	p.K420N	0.783	NULL	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00443,HMMPfam_G-patch,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H	-	no_errors
SH2D1A	4068	genome.wustl.edu	36	X	123331751	123331751	+	Silent	SNP	T	T	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	123331751	123331751	T	C	SNP	SH2D1A	NM_002351	human	genbank	54_36p	+1	reviewed	silent	c.246	p.N82	1.000	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
FAT4	79633	genome.wustl.edu	36	4	126591827	126591827	+	Silent	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	4	126591827	126591827	C	T	SNP	FAT4	NM_024582	human	genbank	54_36p	+1	validated	silent	c.10206	p.P3402	0.540	HMMSmart_CA,superfamily_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_EGF	-	no_errors
HTATSF1	27336	genome.wustl.edu	36	X	135420911	135420911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	135420911	135420911	C	A	SNP	HTATSF1	NM_014500	human	genbank	54_36p	+1	provisional	missense	c.1341	p.N447K	0.844	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
ZFAT	57623	genome.wustl.edu	36	8	135593941	135593941	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	8	135593941	135593941	G	A	SNP	ZFAT	NM_020863	human	genbank	54_36p	-1	validated	missense	c.3320	p.A1107V	0.998	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
CAMSAP1	157922	genome.wustl.edu	36	9	137849665	137849665	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	9	137849665	137849665	G	A	SNP	CAMSAP1	NM_015447	human	genbank	54_36p	-1	validated	missense	c.3416	p.S1139F	0.990	NULL	superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors
PCDHGA8	9708	genome.wustl.edu	36	5	140754717	140754717	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	5	140754717	140754717	G	A	SNP	PCDHGA8	NM_032088	human	genbank	54_36p	+1	reviewed	missense	c.2153	p.R718H	0.445	NULL	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
CLCN1	1180	genome.wustl.edu	36	7	142723430	142723430	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	7	142723430	142723430	G	C	SNP	CLCN1	NM_000083	human	genbank	54_36p	+1	reviewed	missense	c.3	p.M1I	0.994	NULL	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS	-	no_errors
KIAA1688	80728	genome.wustl.edu	36	8	145733964	145733964	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	8	145733964	145733964	T	A	SNP	KIAA1688	NM_025251	human	genbank	54_36p	-1	validated	nonsense	c.2563	p.K855*	1.000	HMMPfam_MyTH4	HMMSmart_SM00456,HMMPfam_WW,superfamily_WW domain,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
FMR1NB	158521	genome.wustl.edu	36	X	146870818	146870818	+	Silent	SNP	C	C	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	146870818	146870818	C	A	SNP	FMR1NB	NM_152578	human	genbank	54_36p	+1	provisional	silent	c.204	p.P68	0.001	NULL	NULL	-	no_errors
HIST2H2AC	8338	genome.wustl.edu	36	1	148125414	148125414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	1	148125414	148125414	G	C	SNP	HIST2H2AC	NM_003517	human	genbank	54_36p	+1	reviewed	missense	c.266	p.R89P	1.000	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors
ACVR2A	92	genome.wustl.edu	36	2	148394363	148394363	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	2	148394363	148394363	G	A	SNP	ACVR2A	NM_001616	human	genbank	54_36p	+1	reviewed	missense	c.1057	p.A353T	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,HMMPfam_Activin_recp,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GPR50	9248	genome.wustl.edu	36	X	150099764	150099764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	150099764	150099764	C	T	SNP	GPR50	NM_004224	human	genbank	54_36p	+1	validated	missense	c.1051	p.R351C	0.137	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_TRYPSIN_HIS	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178314278	178314278	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	1	178314278	178314278	G	C	SNP	CEP350	NM_014810	human	genbank	54_36p	+1	reviewed	missense	c.5822	p.S1941T	1.000	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
ST6GAL1	6480	genome.wustl.edu	36	3	188243224	188243224	+	Silent	SNP	C	C	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	3	188243224	188243224	C	T	SNP	ST6GAL1	NM_003032	human	genbank	54_36p	+1	reviewed	silent	c.39	p.C13	0.006	NULL	HMMPfam_Glyco_transf_29	-	no_errors
RNPEP	6051	genome.wustl.edu	36	1	200237415	200237415	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	1	200237415	200237415	T	A	SNP	RNPEP	NM_020216	human	genbank	54_36p	+1	validated	nonsense	c.1323	p.Y441*	0.996	superfamily_SSF55486	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE,superfamily_ARM-type_fold,HMMPfam_Leuk-A4-hydro_C	-	no_errors
RAPH1	65059	genome.wustl.edu	36	2	204062960	204062960	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	2	204062960	204062960	A	C	SNP	RAPH1	NM_213589	human	genbank	54_36p	-1	validated	missense	c.324	p.S108R	1.000	NULL	HMMSmart_SM00314,HMMPfam_RA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
ZDBF2	57683	genome.wustl.edu	36	2	206881585	206881585	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	2	206881585	206881585	G	T	SNP	ZDBF2	NM_020923	human	genbank	54_36p	+1	validated	missense	c.4088	p.S1363I	0.011	NULL	HMMPfam_zf-DBF	-	no_errors
CPO	130749	genome.wustl.edu	36	2	207535455	207535455	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	2	207535455	207535455	G	C	SNP	CPO	NM_173077	human	genbank	54_36p	+1	validated	missense	c.649	p.A217P	0.982	superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14	PatternScan_CARBOXYPEPT_ZN_2,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1	-	no_errors
ENSG00000217945	0	genome.wustl.edu	36	NT_113961	135726	135740	+	In_Frame_Del	DEL	AAGATCCTGCTGTGA	AAGATCCTGCTGTGA	-	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	AAGATCCTGCTGTGA	AAGATCCTGCTGTGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	NT_113961	135726	135740	AAGATCCTGCTGTGA	-	DEL	ENSG00000217945	ENST00000402318	human	ensembl	54_36p	+1	novel	in_frame_del	c.1019_1033	p.DPAVK341in_frame_del	NULL	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	(deletion:cds_exon[135710,135782])	no_start_codon
ATP7B	540	genome.wustl.edu	36	13	51440722	51440733	+	In_Frame_Del	DEL	GGCAACCAACAC	GGCAACCAACAC	-	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	GGCAACCAACAC	GGCAACCAACAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	13	51440722	51440733	GGCAACCAACAC	-	DEL	ATP7B	NM_000053	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1566_1555	p.VLVA519in_frame_del	0.993:0.993:1.000:0.994:0.607:0.998:1.000:1.000:1.000:0.998:0.997:1.000	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	(deletion:cds_exon[51440581,51440744])	no_errors
PC	5091	genome.wustl.edu	36	11	66373829	66373831	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	CTT	CTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	11	66373829	66373831	CTT	-	DEL	PC	NM_000920	human	genbank	54_36p	-1	reviewed	in_frame_del	c.2976_2974	p.K992in_frame_del	1.000:1.000:1.000	HMMPfam_PYC_OADA,superfamily_SSF89000	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_SSF51569,HMMPfam_HMGL-like,HMMPfam_PYC_OADA,superfamily_SSF89000,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN	(deletion:cds_exon[66373658,66373906])	no_errors
PLXNA3	55558	genome.wustl.edu	36	X	153350427	153350439	+	Frame_Shift_Del	DEL	TTGATGCCATCAC	TTGATGCCATCAC	-	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	TTGATGCCATCAC	TTGATGCCATCAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	153350427	153350439	TTGATGCCATCAC	-	DEL	PLXNA3	NM_017514	human	genbank	54_36p	+1	validated	frame_shift_del	c.4355_4367	p.I1452fs	0.997:0.741:0.996:0.995:0.802:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	(deletion:cds_exon[153350360,153350506])	no_errors
PLXNA3	55558	genome.wustl.edu	36	X	153352856	153352870	+	Splice_Site	DEL	TGGGCTCCGCCCTGC	TGGGCTCCGCCCTGC	-	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	TGGGCTCCGCCCTGC	TGGGCTCCGCCCTGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	X	153352856	153352870	TGGGCTCCGCCCTGC	-	DEL	PLXNA3	NM_017514	human	genbank	54_36p	+1	validated	splice_site_del	c.5369+2_5369+1	e30+2	1.000:0.981:0.888:0.866:0.189:0.031:0.029:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000	-	-	(deletion:intron[153352855,153353024])	no_errors
C1orf125	126859	genome.wustl.edu	36	1	177630877	177630884	+	Frame_Shift_Del	DEL	ACATGATG	ACATGATG	-	novel	unknown	TCGA-20-1682-01A-01W-0633-09	TCGA-20-1682-10A-01W-0633-09	ACATGATG	ACATGATG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1a77c0cf-43c2-409b-81db-a8091e3ebfe0	86334b20-a70a-4a78-8fef-3f98c25e3197	1	177630877	177630884	ACATGATG	-	DEL	C1orf125	NM_144696	human	genbank	54_36p	+1	validated	frame_shift_del	c.1026_1033	p.H343fs	0.980:0.996:0.998:0.997:0.997:0.971:0.331:0.255	NULL	HMMPfam_Ax_dynein_light	(deletion:cds_exon[177630856,177630960])	no_errors
