Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SIRT3	23410	genome.wustl.edu	36	11	208843	208843	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	11	208843	208843	C	T	SNP	SIRT3	NM_012239	human	genbank	54_36p	-1	validated	missense	c.1168	p.E390K	0.158	superfamily_SSF52467	superfamily_SSF52467,HMMPfam_SIR2	-	no_errors
NRSN2	80023	genome.wustl.edu	36	20	282082	282082	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	20	282082	282082	G	T	SNP	NRSN2	NM_024958	human	genbank	54_36p	+1	validated	missense	c.418	p.G140C	0.000	NULL	NULL	-	no_errors
LOC730993	730993	genome.wustl.edu	36	11	3528421	3528421	+	RNA	SNP	T	T	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	11	3528421	3528421	T	G	SNP	LOC730993	XR_038262	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.015	-	-	-	pseudogene
RLN1	6013	genome.wustl.edu	36	9	5329624	5329624	+	Silent	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	9	5329624	5329624	G	A	SNP	RLN1	NM_006911	human	genbank	54_36p	-1	reviewed	silent	c.123	p.R41	0.000	superfamily_Insulin-like,HMMPfam_Insulin,HMMSmart_SM00078	superfamily_Insulin-like,HMMPfam_Insulin,HMMSmart_SM00078,PatternScan_INSULIN	-	no_errors
LAMA1	284217	genome.wustl.edu	36	18	7013221	7013221	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	18	7013221	7013221	G	C	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.2643	p.H881Q	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518254	7518254	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	17	7518254	7518254	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.752	p.I251S	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
PRAM1	84106	genome.wustl.edu	36	19	8470363	8470363	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	19	8470363	8470363	G	T	SNP	PRAM1	NM_032152	human	genbank	54_36p	-1	reviewed	missense	c.329	p.P110H	0.344	NULL	superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10501905	10501905	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	8	10501905	10501905	G	T	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.7113	p.D2371E	0.000	NULL	superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen	-	no_errors
LDHAL6A	160287	genome.wustl.edu	36	11	18442104	18442104	+	Silent	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	11	18442104	18442104	C	T	SNP	LDHAL6A	NM_144972	human	genbank	54_36p	+1	validated	silent	c.147	p.V49	1.000	superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N	superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N,superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C,PatternScan_L_LDH	-	no_errors
TTC39C	125488	genome.wustl.edu	36	18	19952194	19952194	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	18	19952194	19952194	G	C	SNP	TTC39C	NM_153211	human	genbank	54_36p	+1	validated	missense	c.1003	p.V335L	1.000	HMMPfam_Deme6,superfamily_SSF48452	HMMPfam_Deme6,superfamily_SSF48452	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	21039668	21039668	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	16	21039668	21039668	G	T	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	nonsense	c.1593	p.Y531*	0.292	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors
SLCO1A2	6579	genome.wustl.edu	36	12	21345444	21345444	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	12	21345444	21345444	C	A	SNP	SLCO1A2	NM_021094	human	genbank	54_36p	-1	reviewed	missense	c.616	p.G206C	1.000	superfamily_MFS general substrate transporter,HMMPfam_OATP	superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors
MLLT10	8028	genome.wustl.edu	36	10	22002369	22002369	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	10	22002369	22002369	A	T	SNP	MLLT10	NM_004641	human	genbank	54_36p	+1	validated	missense	c.1136	p.D379V	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
ZNF676	163223	genome.wustl.edu	36	19	22154982	22154982	+	Silent	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	19	22154982	22154982	G	T	SNP	ZNF676	NM_001001411	human	genbank	54_36p	-1	provisional	silent	c.1377	p.T459	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CST4	1472	genome.wustl.edu	36	20	23615727	23615727	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	20	23615727	23615727	T	G	SNP	CST4	NM_001899	human	genbank	54_36p	-1	reviewed	missense	c.340	p.K114Q	0.011	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	-	no_errors
CDH2	1000	genome.wustl.edu	36	18	23786154	23786154	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	18	23786154	23786154	G	C	SNP	CDH2	NM_001792	human	genbank	54_36p	-1	reviewed	missense	c.2682	p.F894L	1.000	HMMPfam_Cadherin_C	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
TM9SF4	9777	genome.wustl.edu	36	20	30216789	30216789	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	20	30216789	30216789	C	T	SNP	TM9SF4	NM_014742	human	genbank	54_36p	+1	validated	missense	c.1759	p.L587F	1.000	NULL	HMMPfam_EMP70	-	no_errors
CLDN17	26285	genome.wustl.edu	36	21	30460449	30460449	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	21	30460449	30460449	C	A	SNP	CLDN17	NM_012131	human	genbank	54_36p	-1	provisional	nonsense	c.358	p.G120*	0.001	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
CAPN13	92291	genome.wustl.edu	36	2	30840583	30840583	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	2	30840583	30840583	G	T	SNP	CAPN13	NM_144575	human	genbank	54_36p	-1	validated	missense	c.618	p.H206Q	0.001	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand	-	no_errors
CDH6	1004	genome.wustl.edu	36	5	31358784	31358784	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	5	31358784	31358784	A	G	SNP	CDH6	NM_004932	human	genbank	54_36p	+1	reviewed	missense	c.1985	p.E662G	1.000	HMMPfam_Cadherin_C	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
SKIV2L	6499	genome.wustl.edu	36	6	32039771	32039771	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	6	32039771	32039771	T	G	SNP	SKIV2L	NM_006929	human	genbank	54_36p	+1	reviewed	missense	c.1750	p.S584A	0.965	superfamily_SSF52540	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DSHCT	-	no_errors
LOC647211	647211	genome.wustl.edu	36	16	33287551	33287551	+	RNA	SNP	A	A	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	16	33287551	33287551	A	T	SNP	LOC647211	XR_017499	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
KCTD17	79734	genome.wustl.edu	36	22	35788532	35788532	+	Silent	SNP	C	T	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	22	35788532	35788532	C	T	SNP	KCTD17	NM_024681	human	genbank	54_36p	+1	validated	silent	c.825	p.P275	1.000	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	-	no_errors
CCNA1	8900	genome.wustl.edu	36	13	35905278	35905278	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	13	35905278	35905278	C	A	SNP	CCNA1	NM_003914	human	genbank	54_36p	+1	reviewed	missense	c.217	p.P73T	0.976	NULL	superfamily_Cyclin-like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_SM00385,HMMPfam_Cyclin_C	-	no_errors
BRPF3	27154	genome.wustl.edu	36	6	36276370	36276370	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	6	36276370	36276370	A	G	SNP	BRPF3	NM_015695	human	genbank	54_36p	+1	validated	missense	c.293	p.K98R	1.000	HMMPfam_EPL1	HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP	-	no_errors
NUP155	9631	genome.wustl.edu	36	5	37335419	37335419	+	Silent	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	5	37335419	37335419	C	T	SNP	NUP155	NM_153485	human	genbank	54_36p	-1	reviewed	silent	c.3570	p.G1190	0.839	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors
GDNF	2668	genome.wustl.edu	36	5	37851897	37851897	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	5	37851897	37851897	C	T	SNP	GDNF	NM_000514	human	genbank	54_36p	-1	reviewed	missense	c.249	p.M83I	0.487	NULL	HMMPfam_TGF_beta,superfamily_Cystine-knot cytokines,HMMSmart_SM00204	-	no_errors
ENTHD1	150350	genome.wustl.edu	36	22	38587758	38587758	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	22	38587758	38587758	T	A	SNP	ENTHD1	NM_152512	human	genbank	54_36p	-1	provisional	nonsense	c.550	p.K184*	0.948	NULL	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273	-	no_errors
KBTBD5	131377	genome.wustl.edu	36	3	42702778	42702778	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	3	42702778	42702778	G	A	SNP	KBTBD5	NM_152393	human	genbank	54_36p	+1	validated	missense	c.664	p.E222K	1.000	HMMPfam_BACK	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
PLEKHH2	130271	genome.wustl.edu	36	2	43823467	43823467	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	2	43823467	43823467	C	A	SNP	PLEKHH2	NM_172069	human	genbank	54_36p	+1	validated	nonsense	c.3305	p.S1102*	1.000	HMMSmart_SM00139,HMMPfam_MyTH4	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors
ABCG8	64241	genome.wustl.edu	36	2	43925197	43925197	+	Silent	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	2	43925197	43925197	C	T	SNP	ABCG8	NM_022437	human	genbank	54_36p	+1	reviewed	silent	c.111	p.Y37	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane	-	no_errors
SLC12A5	57468	genome.wustl.edu	36	20	44115653	44115653	+	Silent	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	20	44115653	44115653	C	T	SNP	SLC12A5	NM_020708	human	genbank	54_36p	+1	reviewed	silent	c.2577	p.F859	1.000	NULL	HMMPfam_AA_permease	-	no_errors
FGF10	2255	genome.wustl.edu	36	5	44340995	44340995	+	Silent	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	5	44340995	44340995	A	G	SNP	FGF10	NM_004465	human	genbank	54_36p	-1	reviewed	silent	c.486	p.N162	1.000	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
NCCRP1	342897	genome.wustl.edu	36	19	44382943	44382943	+	Silent	SNP	A	A	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	19	44382943	44382943	A	T	SNP	NCCRP1	NM_001001414	human	genbank	54_36p	+1	provisional	silent	c.666	p.G222	0.381	HMMPfam_FBA,superfamily_Gal_bind_like	HMMPfam_FBA,superfamily_Gal_bind_like	-	no_errors
FANCM	57697	genome.wustl.edu	36	14	44715264	44715264	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	14	44715264	44715264	A	C	SNP	FANCM	NM_020937	human	genbank	54_36p	+1	reviewed	missense	c.3557	p.N1186T	0.006	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Restriction endonuclease-like,HMMPfam_ERCC4,superfamily_RuvA domain 2-like	-	no_errors
CUGBP1	10658	genome.wustl.edu	36	11	47453595	47453595	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	11	47453595	47453595	C	T	SNP	CUGBP1	NM_001025596	human	genbank	54_36p	-1	reviewed	missense	c.1058	p.G353E	0.991	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
BCAS1	8537	genome.wustl.edu	36	20	52108641	52108641	+	Silent	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	20	52108641	52108641	G	T	SNP	BCAS1	NM_003657	human	genbank	54_36p	-1	reviewed	silent	c.24	p.P8	0.073	NULL	NULL	-	no_errors
A1CF	29974	genome.wustl.edu	36	10	52289630	52289630	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	10	52289630	52289630	C	T	SNP	A1CF	NM_138932	human	genbank	54_36p	-1	reviewed	missense	c.77	p.R26H	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like	-	no_errors
SIGLECP16	400709	genome.wustl.edu	36	19	55167000	55167000	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	19	55167000	55167000	C	A	SNP	SIGLECP16	ENST00000356298	human	ensembl	54_36p	+1	known	missense	c.1157	p.P386Q	0.816	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC	-	no_errors
SRP72	6731	genome.wustl.edu	36	4	57048932	57048932	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	4	57048932	57048932	G	A	SNP	SRP72	NM_006947	human	genbank	54_36p	+1	validated	missense	c.1220	p.G407D	1.000	superfamily_SSF48452	superfamily_SSF48452,HMMPfam_TPR_1,HMMPfam_SRP72	-	no_errors
SLC16A7	9194	genome.wustl.edu	36	12	58385067	58385067	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	12	58385067	58385067	G	T	SNP	SLC16A7	NM_004731	human	genbank	54_36p	+1	provisional	splice_site	c.217+1	e1+1	1.000	-	-	-	no_errors
NARG2	79664	genome.wustl.edu	36	15	58527569	58527569	+	Silent	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	15	58527569	58527569	A	G	SNP	NARG2	NM_024611	human	genbank	54_36p	-1	validated	silent	c.2187	p.N729	0.997	HMMPfam_NARG2_C	HMMPfam_NARG2_C	-	no_errors
CCDC86	79080	genome.wustl.edu	36	11	60374338	60374338	+	Silent	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	11	60374338	60374338	G	A	SNP	CCDC86	NM_024098	human	genbank	54_36p	+1	validated	silent	c.1047	p.Q349	1.000	NULL	NULL	-	no_errors
RLBP1L1	157807	genome.wustl.edu	36	8	62533549	62533549	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	8	62533549	62533549	G	T	SNP	RLBP1L1	NM_173519	human	genbank	54_36p	+1	validated	missense	c.871	p.D291Y	0.995	superfamily_CRAL/TRIO domain	superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMPfam_CRAL_TRIO,superfamily_CRAL/TRIO domain,HMMSmart_SM00516	-	no_errors
ZNF772	400720	genome.wustl.edu	36	19	62676608	62676608	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	19	62676608	62676608	C	A	SNP	ZNF772	NM_001024596	human	genbank	54_36p	-1	validated	missense	c.1316	p.C439F	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
SPG21	51324	genome.wustl.edu	36	15	63048706	63048706	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	15	63048706	63048706	T	C	SNP	SPG21	NM_016630	human	genbank	54_36p	-1	reviewed	missense	c.608	p.N203S	1.000	superfamily_SSF53474	superfamily_SSF53474,HMMPfam_Abhydrolase_1	-	no_errors
YTHDF3	253943	genome.wustl.edu	36	8	64262291	64262291	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	8	64262291	64262291	G	A	SNP	YTHDF3	ENST00000339066	human	ensembl	54_36p	+1	known	missense	c.1165	p.E389K	0.997	NULL	HMMPfam_YTH	-	no_stop_codon
LOC100129692	0	genome.wustl.edu	36	X	65212550	65212550	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	X	65212550	65212550	C	T	SNP	LOC100129692	XM_001721387	human	genbank	54_36p	-1	model	missense	c.809	p.R270H	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	HMMPfam_HSF_DNA-bind,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
FAM65A	79567	genome.wustl.edu	36	16	66134254	66134254	+	Silent	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	16	66134254	66134254	C	T	SNP	FAM65A	NM_024519	human	genbank	54_36p	+1	validated	silent	c.2064	p.S688	0.672	NULL	superfamily_ARM-type_fold	-	no_errors
PGM5P2	0	genome.wustl.edu	36	9	68163889	68163889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	9	68163889	68163889	C	T	SNP	PGM5P2	ENST00000377476	human	ensembl	54_36p	-1	known	missense	c.710	p.R237H	1.000	superfamily_A-D-PHexomutase_a/b/a-I/II/III,HMMPfam_PGM_PMM_II	HMMPfam_PGM_PMM_I,superfamily_A-D-PHexomutase_a/b/a-I/II/III,PatternScan_PGM_PMM,HMMPfam_PGM_PMM_II,HMMPfam_PGM_PMM_III	-	no_errors
GPR142	350383	genome.wustl.edu	36	17	69880070	69880070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	17	69880070	69880070	C	T	SNP	GPR142	NM_181790	human	genbank	54_36p	+1	provisional	silent	c.1125	p.F375	0.007	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C17orf28	283987	genome.wustl.edu	36	17	70471525	70471525	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	17	70471525	70471525	T	G	SNP	C17orf28	NM_030630	human	genbank	54_36p	-1	validated	missense	c.292	p.S98R	1.000	HMMPfam_Hid1	HMMPfam_Hid1	-	no_errors
LPHN2	23266	genome.wustl.edu	36	1	82208796	82208796	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	1	82208796	82208796	A	G	SNP	LPHN2	NM_012302	human	genbank	54_36p	+1	reviewed	missense	c.2893	p.T965A	1.000	HMMPfam_7tm_2	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors
HERC3	8916	genome.wustl.edu	36	4	89794224	89794224	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	4	89794224	89794224	T	A	SNP	HERC3	NM_014606	human	genbank	54_36p	+1	provisional	missense	c.694	p.S232T	0.989	superfamily_RCC1/BLIP-II,HMMPfam_RCC1	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
FBLN5	10516	genome.wustl.edu	36	14	91413777	91413777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	14	91413777	91413777	C	T	SNP	FBLN5	NM_006329	human	genbank	54_36p	-1	reviewed	missense	c.992	p.R331H	1.000	HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin	superfamily_EGF/Laminin,HMMPfam_EGF_CA,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
JMJD2D	55693	genome.wustl.edu	36	11	94371473	94371473	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	11	94371473	94371473	G	C	SNP	JMJD2D	NM_018039	human	genbank	54_36p	+1	validated	missense	c.1289	p.S430T	0.000	NULL	HMMPfam_JmjN,HMMSmart_JmjC,HMMPfam_JmjC	-	no_errors
PDE6C	5146	genome.wustl.edu	36	10	95370435	95370435	+	Silent	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	10	95370435	95370435	G	T	SNP	PDE6C	NM_006204	human	genbank	54_36p	+1	validated	silent	c.537	p.L179	1.000	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
LRRK1	79705	genome.wustl.edu	36	15	99412921	99412921	+	Silent	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	15	99412921	99412921	G	A	SNP	LRRK1	NM_024652	human	genbank	54_36p	+1	validated	silent	c.4302	p.E1434	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Miro,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors
OBFC1	79991	genome.wustl.edu	36	10	105648738	105648738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	10	105648738	105648738	G	A	SNP	OBFC1	NM_024928	human	genbank	54_36p	-1	validated	silent	c.468	p.D156	0.984	superfamily_Nucleic_acid_OB	superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,HMMPfam_DUF1879	-	no_errors
ZNF462	58499	genome.wustl.edu	36	9	108729008	108729008	+	Silent	SNP	T	T	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	9	108729008	108729008	T	C	SNP	ZNF462	NM_021224	human	genbank	54_36p	+1	validated	silent	c.2994	p.G998	0.996	superfamily_beta-sandwich domain of Sec23/24	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
PHLDB2	90102	genome.wustl.edu	36	3	113086759	113086759	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	3	113086759	113086759	A	G	SNP	PHLDB2	NM_145753	human	genbank	54_36p	+1	validated	missense	c.1145	p.N382S	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
ADAM30	11085	genome.wustl.edu	36	1	120239728	120239728	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	1	120239728	120239728	G	A	SNP	ADAM30	NM_021794	human	genbank	54_36p	-1	reviewed	missense	c.755	p.A252V	0.002	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,PatternScan_EGF_2"	-	no_errors
OR8D4	338662	genome.wustl.edu	36	11	123283035	123283035	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	11	123283035	123283035	C	G	SNP	OR8D4	NM_001005197	human	genbank	54_36p	+1	provisional	missense	c.687	p.H229Q	0.002	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ADAD1	132612	genome.wustl.edu	36	4	123521617	123521617	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	4	123521617	123521617	C	A	SNP	ADAD1	NM_139243	human	genbank	54_36p	+1	provisional	missense	c.193	p.L65I	0.732	NULL	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_A_deamin	-	no_errors
MKLN1	4289	genome.wustl.edu	36	7	130734566	130734566	+	Silent	SNP	T	T	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	7	130734566	130734566	T	A	SNP	MKLN1	NM_013255	human	genbank	54_36p	+1	validated	silent	c.537	p.L179	1.000	HMMPfam_Muskelin_N,HMMSmart_SM00667	superfamily_Galactose-binding domain-like,HMMPfam_Muskelin_N,HMMSmart_SM00667,HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain	-	no_errors
PCDH10	57575	genome.wustl.edu	36	4	134293192	134293192	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	4	134293192	134293192	A	G	SNP	PCDH10	NM_032961	human	genbank	54_36p	+1	reviewed	missense	c.2447	p.N816S	1.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,PatternScan_EGF_1	-	no_errors
SLC35D3	340146	genome.wustl.edu	36	6	137287328	137287328	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	6	137287328	137287328	C	G	SNP	SLC35D3	NM_001008783	human	genbank	54_36p	+1	provisional	missense	c.1052	p.A351G	0.342	NULL	HMMPfam_UAA	-	no_errors
PCDHB2	56133	genome.wustl.edu	36	5	140456887	140456887	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	5	140456887	140456887	G	T	SNP	PCDHB2	NM_018936	human	genbank	54_36p	+1	reviewed	missense	c.2329	p.V777F	0.001	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCDHB4	56131	genome.wustl.edu	36	5	140482293	140482293	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	5	140482293	140482293	T	A	SNP	PCDHB4	NM_018938	human	genbank	54_36p	+1	reviewed	missense	c.529	p.F177I	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
RPL8	6132	genome.wustl.edu	36	8	145986010	145986010	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	8	145986010	145986010	G	C	SNP	RPL8	NM_000973	human	genbank	54_36p	-1	reviewed	missense	c.757	p.Q253E	1.000	NULL	superfamily_Nucleic acid-binding proteins,HMMPfam_Ribosomal_L2,HMMPfam_Ribosomal_L2_C,superfamily_Translation proteins SH3-like domain,PatternScan_RIBOSOMAL_L2	-	no_errors
SETDB1	9869	genome.wustl.edu	36	1	149181730	149181730	+	Silent	SNP	G	G	C	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	1	149181730	149181730	G	C	SNP	SETDB1	NM_012432	human	genbank	54_36p	+1	reviewed	silent	c.615	p.L205	1.000	NULL	HMMSmart_TUDOR,HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET	-	no_errors
PRUNE	58497	genome.wustl.edu	36	1	149267933	149267933	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	1	149267933	149267933	C	A	SNP	PRUNE	NM_021222	human	genbank	54_36p	+1	provisional	nonsense	c.822	p.C274*	0.996	superfamily_DHH phosphoesterases,HMMPfam_DHHA2	HMMPfam_DHH,superfamily_DHH phosphoesterases,HMMPfam_DHHA2,PatternScan_GLYCOSYL_HYDROL_F5	-	no_errors
GPR149	344758	genome.wustl.edu	36	3	155621675	155621675	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	3	155621675	155621675	A	T	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.1470	p.D490E	0.000	NULL	NULL	-	no_errors
APCS	325	genome.wustl.edu	36	1	157824990	157824990	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	1	157824990	157824990	C	G	SNP	APCS	NM_001639	human	genbank	54_36p	+1	reviewed	missense	c.540	p.D180E	0.880	HMMSmart_PTX,superfamily_ConA_like_lec_gl,HMMPfam_Pentaxin	HMMSmart_PTX,superfamily_ConA_like_lec_gl,HMMPfam_Pentaxin,PatternScan_PENTAXIN	-	no_errors
UBR3	130507	genome.wustl.edu	36	2	170566096	170566096	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	2	170566096	170566096	G	A	SNP	UBR3	NM_172070	human	genbank	54_36p	+1	validated	missense	c.514	p.G172R	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMPfam_zf-C3HC4	-	no_errors
PEX5L	51555	genome.wustl.edu	36	3	181075854	181075854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	3	181075854	181075854	C	T	SNP	PEX5L	NM_016559	human	genbank	54_36p	-1	provisional	missense	c.611	p.G204E	1.000	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
NCKAP1	10787	genome.wustl.edu	36	2	183568743	183568743	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	2	183568743	183568743	C	G	SNP	NCKAP1	NM_205842	human	genbank	54_36p	-1	validated	missense	c.690	p.W230C	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
CFH	3075	genome.wustl.edu	36	1	194982868	194982868	+	Silent	SNP	G	G	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	1	194982868	194982868	G	A	SNP	CFH	NM_000186	human	genbank	54_36p	+1	reviewed	silent	c.3498	p.P1166	0.018	superfamily_Complement control module/SCR domain	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
PLCL1	5334	genome.wustl.edu	36	2	198658688	198658688	+	Silent	SNP	A	A	G	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	2	198658688	198658688	A	G	SNP	PLCL1	NM_006226	human	genbank	54_36p	+1	provisional	silent	c.1908	p.P636	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
PIP5K3	200576	genome.wustl.edu	36	2	208897160	208897160	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	2	208897160	208897160	C	A	SNP	PIP5K3	NM_015040	human	genbank	54_36p	+1	validated	missense	c.2240	p.P747H	0.998	superfamily_GroEL-intermediate domain like,HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_GroEL-intermediate domain like,HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	no_errors
NADK	65220	genome.wustl.edu	36	1	1674207	1674208	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	1	1674207	1674208	-	CCT	INS	NADK	NM_023018	human	genbank	54_36p	-1	validated	in_frame_ins	c.1337_1336	p.446in_frame_insE	0.003:0.004	NULL	superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase	-	no_errors
CPNE9	151835	genome.wustl.edu	36	3	9742733	9742761	+	In_Frame_Del	DEL	AGCGTGAGTCTGAGGAGGAGGGCTTGGCA	AGCGTGAGTCTGAGGAGGAGGGCTTGGCA	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	AGCGTGAGTCTGAGGAGGAGGGCTTGGCA	AGCGTGAGTCTGAGGAGGAGGGCTTGGCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	3	9742733	9742761	AGCGTGAGTCTGAGGAGGAGGGCTTGGCA	-	DEL	CPNE9	NM_153635	human	genbank	54_36p	+1	validated	in_frame_del	c.1342_1344	p.S448in_frame_del	1.000:0.995:0.982	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	(deletion:cds_exon[9742633,9742735], intron[9742736,9743348])	no_errors
TEKT5	146279	genome.wustl.edu	36	16	10695678	10695684	+	Frame_Shift_Del	DEL	CAGTTCA	CAGTTCA	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	CAGTTCA	CAGTTCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	16	10695678	10695684	CAGTTCA	-	DEL	TEKT5	NM_144674	human	genbank	54_36p	-1	provisional	frame_shift_del	c.554_548	p.V183fs	0.996:0.996:0.994:0.996:0.985:0.901:0.885	HMMPfam_Tektin	HMMPfam_Tektin	(deletion:cds_exon[10695668,10696231])	no_errors
ZNF225	7768	genome.wustl.edu	36	19	49327683	49327683	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	19	49327683	49327683	T	-	DEL	ZNF225	NM_013362	human	genbank	54_36p	+1	validated	frame_shift_del	c.1076	p.Y360fs	0.004	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[49326843,49328728])	no_errors
MST1R	4486	genome.wustl.edu	36	3	49910022	49910023	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	TA	TA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	3	49910022	49910023	TA	-	DEL	MST1R	NM_002447	human	genbank	54_36p	-1	validated	frame_shift_del	c.1981_1980	p.N661fs	0.002:0.001	HMMSmart_SM00429,HMMPfam_TIG	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,superfamily_Plexin repeat,HMMPfam_PSI,HMMSmart_SM00423,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[49909957,49910122])	no_errors
ACADS	35	genome.wustl.edu	36	12	119661511	119661541	+	Frame_Shift_Del	DEL	CGTGACAGAGATGCCGGCAGAGCGGCACTAC	CGTGACAGAGATGCCGGCAGAGCGGCACTAC	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	CGTGACAGAGATGCCGGCAGAGCGGCACTAC	CGTGACAGAGATGCCGGCAGAGCGGCACTAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	12	119661511	119661541	CGTGACAGAGATGCCGGCAGAGCGGCACTAC	-	DEL	ACADS	NM_000017	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1116_1146	p.V373fs	0.990:1.000:1.000:1.000:0.997:0.995:0.973:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.900:1.000:1.000:0.992:1.000:1.000:0.998:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2	superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2	(deletion:cds_exon[119661482,119661634])	no_errors
SNORD90	0	genome.wustl.edu	36	9	124682396	124682405	+	RNA	DEL	CATCATTAGA	CATCATTAGA	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	CATCATTAGA	CATCATTAGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	9	124682396	124682405	CATCATTAGA	-	DEL	SNORD90	NR_003071	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1.000:1.000:1.000:1.000:0.998:0.973:0.939:0.997:1.000:1.000	-	-	(deletion:rna[124682313,124682419])	no_errors
IRF5	3663	genome.wustl.edu	36	7	128374588	128374617	+	Splice_Site	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	7	128374588	128374617	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	DEL	IRF5	NM_002200	human	genbank	54_36p	+1	reviewed	splice_site_del	c.541+9_541+1	e6-1	0.714:0.698:0.682:0.666:0.650:0.635:0.620:0.605:0.590:0.575:0.561:0.546:0.532:0.517:0.503:0.489:0.475:0.461:0.447:0.433:0.419:0.405:0.391:0.377:0.363:0.349:0.335:0.321:0.306:0.292	-	-	(deletion:intron[128374580,128374609], cds_exon[128374610,128374825])	no_errors
HIVEP2	3097	genome.wustl.edu	36	6	143116411	143116416	+	In_Frame_Del	DEL	AGCGTG	AGCGTG	-	novel	unknown	TCGA-23-1029-01B-01W-0639-09	TCGA-23-1029-10A-01W-0639-09	AGCGTG	AGCGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f8a33d13-f6f8-4328-a895-4bfdb94015ab	3a5c9d27-bef8-48c4-9009-758f47424e85	6	143116411	143116416	AGCGTG	-	DEL	HIVEP2	NM_006734	human	genbank	54_36p	-1	provisional	in_frame_del	c.6867_6862	p.HA2288in_frame_del	0.000:0.000:0.000:0.000:0.591:0.697	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	(deletion:cds_exon[143115937,143116761])	no_errors
