Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
HSD3B1	3283	genome.wustl.edu	36	1	119858714	119858714	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	119858714	119858714	G	T	SNP	HSD3B1	NM_000862	human	genbank	54_36p	1	validated	missense	c.1045	p.A349S	1	NULL	HMMPfam_3Beta_HSD;superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
PGLYRP3	114771	genome.wustl.edu	36	1	151549717	151549717	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	151549717	151549717	C	T	SNP	PGLYRP3	NM_052891	human	genbank	54_36p	-1	provisional	missense	c.49	p.A17T	0.02	NULL	-	-	no_errors
INSRR	3645	genome.wustl.edu	36	1	155090326	155090326	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	155090326	155090326	G	C	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.479	p.P160R	0.58	NULL	Recep_L_domain;HMMPfam_Recep_L_domain;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;fn3;HMMPfam_fn3;Furin-like;HMMPfam_Furin-like	-	no_errors
LOC148430	148430	genome.wustl.edu	36	1	159643193	159643193	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	159643193	159643193	C	G	SNP	LOC148430	XR_017209	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SRGAP2	23380	genome.wustl.edu	36	1	204698858	204698858	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	204698858	204698858	C	A	SNP	SRGAP2	ENST00000367123	human	ensembl	54_36p	1	known	missense	c.728	p.A243E	0.997	NULL	-	-	no_stop_codon
LAMB3	3914	genome.wustl.edu	36	1	207857413	207857413	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	207857413	207857413	C	A	SNP	LAMB3	NM_000228	human	genbank	54_36p	-1	reviewed	nonsense	c.3193	p.E1065*		NULL	HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Cytochrome c;superfamily_Spectrin repeat;superfamily_EGF/Laminin	-	no_errors
CAPN9	10753	genome.wustl.edu	36	1	228995244	228995244	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	228995244	228995244	A	T	SNP	CAPN9	NM_006615	human	genbank	54_36p	1	reviewed	missense	c.1817	p.D606V	1	NULL	-	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240343860	240343860	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	240343860	240343860	A	C	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.749	p.I250S	1	NULL	-	-	no_errors
LOC646784	646784	genome.wustl.edu	36	1	91262861	91262861	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	1	91262861	91262861	C	T	SNP	LOC646784	XR_017249	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
C10orf2	56652	genome.wustl.edu	36	10	102738267	102738267	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	10	102738267	102738267	A	T	SNP	C10orf2	NM_021830	human	genbank	54_36p	1	validated	missense	c.310	p.I104F	1	NULL	-	-	no_errors
PNLIPRP3	119548	genome.wustl.edu	36	10	118226224	118226224	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	10	118226224	118226224	A	T	SNP	PNLIPRP3	NM_001011709	human	genbank	54_36p	1	validated	missense	c.1243	p.S415C	0.74	NULL	-	-	no_errors
CRTAC1	55118	genome.wustl.edu	36	10	99645642	99645642	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	10	99645642	99645642	C	A	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1307	p.R436L	0.996	NULL	HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18687509	18687509	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	11	18687509	18687509	C	T	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	splice_site	c.2695+1	e16+1	1	-	-	-	no_errors
CKAP5	9793	genome.wustl.edu	36	11	46775067	46775067	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	11	46775067	46775067	C	T	SNP	CKAP5	NM_001008938	human	genbank	54_36p	-1	validated	splice_site	c.1339-1	e11-1	1	-	-	-	no_errors
PATL1	219988	genome.wustl.edu	36	11	59179634	59179634	+	Silent	SNP	G	G	C		Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	11	59179634	59179634	G	C	SNP	PATL1	NM_152716	human	genbank	54_36p	-1	validated	silent	c.540	p.P180	0.908	NULL	-	-	no_errors
SUV420H1	51111	genome.wustl.edu	36	11	67682381	67682381	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	11	67682381	67682381	G	T	SNP	SUV420H1	NM_017635	human	genbank	54_36p	-1	reviewed	missense	c.2008	p.P670T	0.71	NULL	HMMPfam_SET;superfamily_SET domain	-	no_errors
CCDC60	160777	genome.wustl.edu	36	12	118422311	118422311	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	12	118422311	118422311	C	A	SNP	CCDC60	NM_178499	human	genbank	54_36p	1	validated	missense	c.603	p.D201E	1	NULL	-	-	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124634364	124634364	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	12	124634364	124634364	G	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	missense	c.1293	p.L431F	0.997	NULL	-	-	no_errors
CNTN1	1272	genome.wustl.edu	36	12	39705370	39705370	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	12	39705370	39705370	C	A	SNP	CNTN1	NM_001843	human	genbank	54_36p	1	reviewed	missense	c.2675	p.P892Q	1	HMMPfam_fn3	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
MARS	4141	genome.wustl.edu	36	12	56194772	56194772	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	12	56194772	56194772	C	T	SNP	MARS	NM_004990	human	genbank	54_36p	1	reviewed	missense	c.1970	p.A657V	1	HMMPfam_tRNA-synt_1g	HMMPfam_WHEP-TRS;HMMPfam_GST_C;superfamily_S15/NS1 RNA-binding domain;superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;superfamily_Glutathione S-transferase (GST) C-terminal domain;superfamily_Thioredoxin-like;HMMPfam_tRNA-synt_1g;superfamily_Nucleotidylyl transferase;superfamily_Methionyl-tRNA synthetase (MetRS) Zn-domain	-	no_errors
STARD13	90627	genome.wustl.edu	36	13	32614466	32614466	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	13	32614466	32614466	A	T	SNP	STARD13	NM_178006	human	genbank	54_36p	-1	validated	missense	c.368	p.V123E	1	NULL	HMMPfam_RhoGAP;HMMPfam_START;superfamily_GTPase activation domain GAP;HMMPfam_SAM_2;superfamily_Bet v1-like	-	no_errors
TDRD9	122402	genome.wustl.edu	36	14	103552136	103552136	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	14	103552136	103552136	G	T	SNP	TDRD9	NM_153046	human	genbank	54_36p	1	validated	silent	c.1434	p.A478	0.025	NULL	-	-	no_errors
CEBPE	1053	genome.wustl.edu	36	14	22658083	22658083	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	14	22658083	22658083	A	T	SNP	CEBPE	NM_001805	human	genbank	54_36p	-1	reviewed	missense	c.58	p.F20I	1	NULL	HMMPfam_bZIP_2	-	no_errors
RTN1	6252	genome.wustl.edu	36	14	59282307	59282307	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	14	59282307	59282307	G	T	SNP	RTN1	NM_021136	human	genbank	54_36p	-1	reviewed	missense	c.887	p.T296N	0.25	NULL	Reticulon;HMMPfam_Reticulon	-	no_errors
VSX2	338917	genome.wustl.edu	36	14	73781670	73781670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	14	73781670	73781670	G	A	SNP	VSX2	NM_182894	human	genbank	54_36p	1	validated	missense	c.505	p.E169K	1	NULL	HMMPfam_Homeobox;HMMPfam_OAR;superfamily_Homeodomain-like	-	no_errors
VPS18	57617	genome.wustl.edu	36	15	38980364	38980364	+	Missense_Mutation	SNP	G	G	A		Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	15	38980364	38980364	G	A	SNP	VPS18	NM_020857	human	genbank	54_36p	1	reviewed	missense	c.2056	p.A686T	1	NULL	-	-	no_errors
GPR139	124274	genome.wustl.edu	36	16	19950734	19950734	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	16	19950734	19950734	C	A	SNP	GPR139	NM_001002911	human	genbank	54_36p	-1	validated	missense	c.886	p.A296S	1	NULL	-	-	no_errors
GPR139	124274	genome.wustl.edu	36	16	19950854	19950854	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	16	19950854	19950854	G	A	SNP	GPR139	NM_001002911	human	genbank	54_36p	-1	validated	missense	c.766	p.P256S	1	NULL	-	-	no_errors
FBRS	64319	genome.wustl.edu	36	16	30588225	30588225	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	16	30588225	30588225	G	T	SNP	FBRS	NM_001105079	human	genbank	54_36p	1	validated	missense	c.1141	p.G381C	0.91	NULL	-	-	no_errors
ITGAX	3687	genome.wustl.edu	36	16	31282089	31282089	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	16	31282089	31282089	A	C	SNP	ITGAX	NM_000887	human	genbank	54_36p	1	reviewed	missense	c.1603	p.K535Q	0.2	HMMPfam_FG-GAP	HMMPfam_VWA;HMMPfam_Integrin_alpha;HMMPfam_FG-GAP;HMMPfam_Integrin_alpha2;superfamily_vWA-like;superfamily_Integrin domains;superfamily_Integrin alpha N-terminal domain	-	no_errors
RBL2	5934	genome.wustl.edu	36	16	52081562	52081562	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	16	52081562	52081562	G	T	SNP	RBL2	NM_005611	human	genbank	54_36p	1	validated	missense	c.3269	p.S1090I	1	NULL	RB_B,HMMPfam_RB_B,RB_A,HMMPfam_RB_A	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69660861	69660861	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	16	69660861	69660861	A	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.1784	p.I595N	1	NULL	-	-	no_errors
LOC284167	284167	genome.wustl.edu	36	17	57569069	57569069	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	17	57569069	57569069	C	A	SNP	LOC284167	XR_017049	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.768	-	-	-	pseudogene
TNRC6C	57690	genome.wustl.edu	36	17	73558434	73558434	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	17	73558434	73558434	G	T	SNP	TNRC6C	NM_018996	human	genbank	54_36p	1	validated	missense	c.1696	p.D566Y	1	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519204	7519204	+	Missense_Mutation	SNP	G	G	A	rs28934874	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	17	7519204	7519204	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.451	p.P151S	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
GALNT1	2589	genome.wustl.edu	36	18	31526181	31526181	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	18	31526181	31526181	G	A	SNP	GALNT1	NM_020474	human	genbank	54_36p	1	reviewed	missense	c.1198	p.V400I	0.78	NULL	HMMPfam_Ricin_B_lectin;HMMPfam_Glycos_transf_2;superfamily_Ricin B-like lectins;superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
SLC14A2	8170	genome.wustl.edu	36	18	41516374	41516374	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	18	41516374	41516374	G	A	SNP	SLC14A2	NM_007163	human	genbank	54_36p	1	validated	silent	c.2655	p.P885	0.431	NULL	HMMPfam_UT,superfamily_Multiheme cytochromes	-	no_errors
OR10H5	284433	genome.wustl.edu	36	19	15765980	15765980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	19	15765980	15765980	G	A	SNP	OR10H5	NM_001004466	human	genbank	54_36p	1	provisional	missense	c.122	p.G41D	0.01	NULL	-	-	no_errors
DDA1	79016	genome.wustl.edu	36	19	17286170	17286170	+	Silent	SNP	G	G	T		Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	19	17286170	17286170	G	T	SNP	DDA1	NM_024050	human	genbank	54_36p	1	validated	silent	c.108	p.L36	1	NULL	-	-	no_errors
ZNF222	7673	genome.wustl.edu	36	19	49227919	49227919	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	19	49227919	49227919	A	C	SNP	ZNF222	NM_013360	human	genbank	54_36p	1	validated	missense	c.252	p.Q84H		NULL	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF649	65251	genome.wustl.edu	36	19	57092003	57092003	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	19	57092003	57092003	C	T	SNP	ZNF649	NM_023074	human	genbank	54_36p	-1	provisional	nonsense	c.56	p.W19*	0.97	NULL	-	-	no_errors
ZNF813	126017	genome.wustl.edu	36	19	58686814	58686814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	19	58686814	58686814	C	T	SNP	ZNF813	NM_001004301	human	genbank	54_36p	1	validated	missense	c.1516	p.R506W		NULL	-	-	no_errors
LILRA2	11027	genome.wustl.edu	36	19	59778192	59778192	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	19	59778192	59778192	A	G	SNP	LILRA2	NM_006866	human	genbank	54_36p	1	validated	missense	c.535	p.I179V		NULL	-	-	no_errors
NLRP8	126205	genome.wustl.edu	36	19	61169559	61169559	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	19	61169559	61169559	G	T	SNP	NLRP8	NM_176811	human	genbank	54_36p	1	provisional	splice_site	c.2381+1	e5+1	0.02	-	-	-	no_errors
ZC3H6	376940	genome.wustl.edu	36	2	112805053	112805053	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	2	112805053	112805053	A	G	SNP	ZC3H6	NM_198581	human	genbank	54_36p	1	validated	missense	c.2087	p.D696G	1	NULL	-	-	no_errors
PKP4	8502	genome.wustl.edu	36	2	159186089	159186089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	2	159186089	159186089	G	C	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	missense	c.513	p.K171N	1	NULL	-	-	no_errors
ASNSD1	54529	genome.wustl.edu	36	2	190240088	190240088	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	2	190240088	190240088	G	T	SNP	ASNSD1	NM_019048	human	genbank	54_36p	1	validated	missense	c.985	p.G329C	1	NULL	-	-	no_errors
GGCX	2677	genome.wustl.edu	36	2	85639141	85639154	+	Frame_Shift_Del	DEL	TCCATGATGTCTTG	TCCATGATGTCTTG	-	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	TCCATGATGTCTTG	TCCATGATGTCTTG	TCCATGATGTCTTG	-	TCCATGATGTCTTG	TCCATGATGTCTTG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	2	85639141	85639154	TCCATGATGTCTTG	-	DEL	GGCX	NM_000821	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.472_459	p.D153fs	1.000:1.000:1.000:1.000:0.987:0.998:0.984:0.965:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_VKG_Carbox	HMMPfam_VKG_Carbox;superfamily_RmlC-like cupins	(deletion:cds_exon[85639074;85639239])	no_errors
ZSWIM3	140831	genome.wustl.edu	36	20	43938876	43938876	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	20	43938876	43938876	T	A	SNP	ZSWIM3	NM_080752	human	genbank	54_36p	1	validated	missense	c.272	p.L91Q	0.99	NULL	-	-	no_errors
NCOA3	8202	genome.wustl.edu	36	20	45696310	45696310	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	20	45696310	45696310	A	T	SNP	NCOA3	NM_181659	human	genbank	54_36p	1	reviewed	missense	c.1076	p.D359V	1	NULL	HMMPfam_HLH;superfamily_Nuclear receptor coactivator interlocking domain;HMMPfam_DUF1518;superfamily_HLH helix-loop-helix DNA-binding domain;HMMPfam_PAS;HMMPfam_Nuc_rec_co-act;HMMPfam_SRC-1;superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
RIPK4	54101	genome.wustl.edu	36	21	42034499	42034499	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	21	42034499	42034499	C	T	SNP	RIPK4	ENST00000330470	human	ensembl	54_36p	-1	known	missense	c.1132	p.A378T	1	NULL	-	-	no_errors
MYO18B	84700	genome.wustl.edu	36	22	24718430	24718430	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	22	24718430	24718430	A	C	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	missense	c.6258	p.E2086D	1	NULL	HMMPfam_Myosin_head;superfamily_tRNA-binding arm;superfamily_P-loop containing nucleoside triphosphate hydrolases;HMMPfam_IQ	-	no_errors
LOC730005	730005	genome.wustl.edu	36	22	29251840	29251840	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	22	29251840	29251840	G	A	SNP	LOC730005	XM_001132040	human	genbank	54_36p	-1	model	silent	c.744	p.P248	0.92	NULL	-	-	no_errors
CRBN	51185	genome.wustl.edu	36	3	3190765	3190765	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	3	3190765	3190765	T	C	SNP	CRBN	NM_016302	human	genbank	54_36p	-1	validated	missense	c.355	p.T119A	1	NULL	-	-	no_errors
CDCP1	64866	genome.wustl.edu	36	3	45102499	45102499	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	3	45102499	45102499	G	C	SNP	CDCP1	NM_022842	human	genbank	54_36p	-1	reviewed	missense	c.2146	p.P716A	0.982	NULL	superfamily_Spermadhesin CUB domain	-	no_errors
C3orf63	23272	genome.wustl.edu	36	3	56650737	56650737	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	3	56650737	56650737	C	G	SNP	C3orf63	NM_015224	human	genbank	54_36p	-1	validated	missense	c.1111	p.D371H	1	NULL	-	-	no_errors
FGF2	2247	genome.wustl.edu	36	4	124032998	124032998	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	4	124032998	124032998	C	G	SNP	FGF2	NM_002006	human	genbank	54_36p	1	reviewed	missense	c.864	p.S288R	1	NULL	HMMPfam_FGF;superfamily_Cytokine	-	no_errors
CORIN	10699	genome.wustl.edu	36	4	47361995	47361995	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	4	47361995	47361995	G	C	SNP	CORIN	NM_006587	human	genbank	54_36p	-1	reviewed	missense	c.1400	p.P467R	1	NULL	-	-	no_errors
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	36	5	139883903	139883903	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	5	139883903	139883903	G	A	SNP	ANKHD1-EIF4EBP3	NM_020690	human	genbank	54_36p	1	reviewed	silent	c.4386	p.K1462	1	NULL	-	-	no_errors
TRIM23	373	genome.wustl.edu	36	5	64928098	64928098	+	Silent	SNP	A	A	G		Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	5	64928098	64928098	A	G	SNP	TRIM23	NM_001656	human	genbank	54_36p	-1	reviewed	silent	c.1326	p.T442	0.997	HMMPfam_Arf	superfamily_RING/U-box,HMMPfam_zf-B_box,HMMPfam_zf-C3HC4,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
VNN1	8876	genome.wustl.edu	36	6	133046057	133046057	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	6	133046057	133046057	G	C	SNP	VNN1	NM_004666	human	genbank	54_36p	-1	reviewed	nonsense	c.1457	p.S486*		NULL	HMMPfam_CN_hydrolase;superfamily_Carbon-nitrogen hydrolase	-	no_errors
SLC35D3	340146	genome.wustl.edu	36	6	137287256	137287256	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	6	137287256	137287256	G	C	SNP	SLC35D3	NM_001008783	human	genbank	54_36p	1	provisional	missense	c.980	p.G327A	1	NULL	-	-	no_errors
SYNGAP1	8831	genome.wustl.edu	36	6	33513723	33513723	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	6	33513723	33513723	G	A	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	missense	c.1018	p.G340R	1	NULL	HMMPfam_C2;HMMPfam_PH;HMMPfam_RasGAP;superfamily_GTPase activation domain GAP;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_PH domain-like	-	no_errors
LOC727842	727842	genome.wustl.edu	36	6	58554097	58554097	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	6	58554097	58554097	G	T	SNP	LOC727842	XR_015140	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ME1	4199	genome.wustl.edu	36	6	83983022	83983022	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	6	83983022	83983022	G	T	SNP	ME1	NM_002395	human	genbank	54_36p	-1	reviewed	missense	c.1462	p.Q488K	0.99	HMMPfam_Malic_M	HMMPfam_malic;HMMPfam_Malic_M;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Aminoacid dehydrogenase-like N-terminal domain	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98430214	98430214	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	7	98430214	98430214	G	T	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	silent	c.9987	p.V3329	1	NULL	HMMPfam_PI3_PI4_kinase;HMMPfam_FAT;superfamily_Protein kinase-like (PK-like);superfamily_ARM repeat;superfamily_Protein prenylyltransferase;superfamily_TPR-like;superfamily_TolA/TonB C-terminal domain	-	no_errors
ZKSCAN1	7586	genome.wustl.edu	36	7	99459864	99459864	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	7	99459864	99459864	G	A	SNP	ZKSCAN1	NM_003439	human	genbank	54_36p	1	validated	missense	c.578	p.R193Q	0.55	NULL	-	-	no_errors
GSR	2936	genome.wustl.edu	36	8	30686962	30686962	+	Splice_Site	DEL	C	-	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	-	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	8	30686962	30686962	C	-	DEL	GSR	NM_000637	human	genbank	54_36p	-1	validated	splice_site_del	c.NULL	e3-1	1.000:0.997	-	-	(deletion:intron[30686962;30689120])	no_errors
PENK	5179	genome.wustl.edu	36	8	57516543	57516543	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	8	57516543	57516543	T	C	SNP	PENK	NM_006211	human	genbank	54_36p	-1	validated	missense	c.646	p.R216G	1	NULL	HMMPfam_Opiods_neuropep	-	no_errors
MELK	9833	genome.wustl.edu	36	9	36661029	36661029	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	9	36661029	36661029	C	T	SNP	MELK	NM_014791	human	genbank	54_36p	1	provisional	missense	c.1540	p.H514Y	1	NULL	HMMPfam_Pkinase;HMMPfam_KA1;superfamily_Protein kinase-like (PK-like);superfamily_Kinase associated domain 1 KA1	-	no_errors
SLC25A5	292	genome.wustl.edu	36	X	118488012	118488012	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	X	118488012	118488012	G	A	SNP	SLC25A5	NM_001152	human	genbank	54_36p	1	validated	missense	c.472	p.G158S	1	HMMPfam_Mito_carr	HMMPfam_Mito_carr,superfamily_Mitochondrial carrier	-	no_errors
HCFC1	3054	genome.wustl.edu	36	X	152876088	152876088	+	Missense_Mutation	SNP	T	T	C		Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	X	152876088	152876088	T	C	SNP	HCFC1	NM_005334	human	genbank	54_36p	-1	reviewed	missense	c.2224	p.S742G	1	NULL	-	-	no_errors
PELI1	57162	genome.wustl.edu	36	2	64175553	64175554	+	Missense_Mutation	DNP	TC	TC	AT	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	TC	TC	TC	AT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	2	64175553	64175554	TC	AT	DNP	PELI1	NM_020651	human	genbank	54_36p	-1	validated	missense	c.1044_1043	p.G348D	1.000:1.000	HMMPfam_Pellino	HMMPfam_Pellino	-	no_errors
THBS1	7057	genome.wustl.edu	36	15	37662126	37662127	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	00c41845-6b48-40fa-82e9-1b436e7d91c3	4c9bc38a-51ca-49dc-9120-68e7c490c62a	15	37662126	37662127	GA	TT	DNP	THBS1	NM_003246	human	genbank	54_36p	1	reviewed	missense	c.508_509	p.D170F	1.000:1.000	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,HMMPfam_TSP_C	-	no_errors
