Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
LIX1L	128077	genome.wustl.edu	36	1	144209961	144209961	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	1	144209961	144209961	G	C	SNP	LIX1L	NM_153713	human	genbank	54_36p	1	provisional	missense	c.840	p.W280C	1	NULL	-	-	no_errors
ADAM15	8751	genome.wustl.edu	36	1	153296343	153296343	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	1	153296343	153296343	C	T	SNP	ADAM15	NM_207197	human	genbank	54_36p	1	reviewed	missense	c.1204	p.L402F	0.99	HMMPfam_Reprolysin	"superfamily_Metalloproteases (""zincins"") catalytic domain;EGF/Laminin;superfamily_EGF/Laminin;Reprolysin;HMMPfam_Reprolysin;Disintegrin;HMMPfam_Disintegrin;Blood coagulation inhibitor (disintegrin);superfamily_Blood coagulation inhibitor (disintegrin);Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_CR;HMMPfam_ADAM_CR;EGF_2;HMMPfam_EGF_2;Metalloproteases (""zincins"") catalytic domain"	-	no_errors
SCAMP3	10067	genome.wustl.edu	36	1	153492747	153492747	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	1	153492747	153492747	G	A	SNP	SCAMP3	NM_005698	human	genbank	54_36p	-1	reviewed	nonsense	c.985	p.R329*	1	NULL	-	-	no_errors
FCRL4	83417	genome.wustl.edu	36	1	155824329	155824329	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	1	155824329	155824329	C	A	SNP	FCRL4	NM_031282	human	genbank	54_36p	-1	provisional	missense	c.512	p.G171V	0	NULL	HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
UCK2	7371	genome.wustl.edu	36	1	164139129	164139129	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	1	164139129	164139129	T	C	SNP	UCK2	NM_012474	human	genbank	54_36p	1	reviewed	missense	c.586	p.F196L	1	HMMPfam_PRK	HMMPfam_PRK;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
POGK	57645	genome.wustl.edu	36	1	165086065	165086065	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	1	165086065	165086065	C	T	SNP	POGK	NM_017542	human	genbank	54_36p	1	reviewed	missense	c.1625	p.P542L	0.29	NULL	-	-	no_errors
HFM1	164045	genome.wustl.edu	36	1	91554067	91554067	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	1	91554067	91554067	T	C	SNP	HFM1	NM_001017975	human	genbank	54_36p	-1	validated	silent	c.3033	p.L1011	0.97	NULL	-	-	no_errors
ABLIM1	3983	genome.wustl.edu	36	10	116407732	116407732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	10	116407732	116407732	C	T	SNP	ABLIM1	NM_002313	human	genbank	54_36p	-1	reviewed	missense	c.218	p.R73H	0	NULL	HMMPfam_LIM;HMMPfam_VHP;superfamily_VHP Villin headpiece domain;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
MEIG1	644890	genome.wustl.edu	36	10	15048569	15048569	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	10	15048569	15048569	T	A	SNP	MEIG1	NM_001080836	human	genbank	54_36p	1	validated	nonsense	c.96	p.Y32*	1	NULL	-	-	no_errors
DDX50	79009	genome.wustl.edu	36	10	70365827	70365827	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	10	70365827	70365827	C	T	SNP	DDX50	NM_024045	human	genbank	54_36p	1	reviewed	silent	c.1581	p.S527	1	NULL	HMMPfam_Helicase_C;HMMPfam_DEAD;HMMPfam_GUCT;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNTT	1791	genome.wustl.edu	36	10	98072464	98072464	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	10	98072464	98072464	C	A	SNP	DNTT	NM_004088	human	genbank	54_36p	1	reviewed	missense	c.739	p.Q247K	0.89	NULL	HMMPfam_BRCT;HMMPfam_NTP_transf_2;superfamily_DNA polymerase beta N-terminal domain-like;superfamily_BRCT domain;superfamily_Nucleotidyltransferase;superfamily_DNA polymerase beta-like second domain	-	no_errors
ZBTB16	7704	genome.wustl.edu	36	11	113440042	113440042	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	11	113440042	113440042	C	A	SNP	ZBTB16	NM_001018011	human	genbank	54_36p	1	reviewed	missense	c.810	p.D270E	1	NULL	HMMPfam_zf-C2H2;HMMPfam_BTB;superfamily_POZ domain;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ARCN1	372	genome.wustl.edu	36	11	117959773	117959773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	11	117959773	117959773	G	C	SNP	ARCN1	NM_001655	human	genbank	54_36p	1	reviewed	missense	c.487	p.A163P	1	NULL	-	-	no_errors
CARS	833	genome.wustl.edu	36	11	2995080	2995080	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	11	2995080	2995080	T	A	SNP	CARS	NM_001014437	human	genbank	54_36p	-1	reviewed	silent	c.1749	p.A583	0.86	NULL	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;superfamily_Glutathione S-transferase (GST) C-terminal domain;HMMPfam_tRNA-synt_1e;superfamily_Nucleotidylyl transferase	-	no_errors
MADD	8567	genome.wustl.edu	36	11	47267100	47267100	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	11	47267100	47267100	G	A	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	missense	c.2659	p.G887R	1	NULL	HMMPfam_DENN;HMMPfam_dDENN;HMMPfam_uDENN	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62052072	62052072	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	11	62052072	62052072	G	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	silent	c.6393	p.V2131	0.69	NULL	HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_CheC	-	no_errors
KDM2A	22992	genome.wustl.edu	36	11	66774457	66774457	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	11	66774457	66774457	A	C	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.2380	p.I794L	1	NULL	HMMPfam_LRR_1;HMMPfam_F-box;HMMPfam_zf-CXXC;superfamily_FYVE/PHD zinc finger;HMMPfam_JmjC;superfamily_Clavaminate synthase-like;superfamily_RNI-like	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100533220	100533220	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	13	100533220	100533220	G	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.3706	p.P1236T	1	NULL	HMMPfam_Ion_trans;superfamily_Voltage-gated potassium channels	-	no_errors
KBTBD7	84078	genome.wustl.edu	36	13	40664661	40664661	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	13	40664661	40664661	C	G	SNP	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	missense	c.1733	p.W578S	1	NULL	-	-	no_errors
RPGRIP1	57096	genome.wustl.edu	36	14	20832711	20832711	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	14	20832711	20832711	A	G	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	1	reviewed	missense	c.121	p.M41V	0.9	NULL	HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
SLC24A4	123041	genome.wustl.edu	36	14	92022774	92022774	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	14	92022774	92022774	C	T	SNP	SLC24A4	NM_153646	human	genbank	54_36p	1	validated	silent	c.1383	p.I461	1	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
VPS33B	26276	genome.wustl.edu	36	15	89349139	89349139	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	15	89349139	89349139	G	C	SNP	VPS33B	NM_018668	human	genbank	54_36p	-1	reviewed	silent	c.1197	p.L399	0.99	HMMPfam_Sec1	HMMPfam_Sec1;superfamily_Sec1/munc18-like (SM) proteins	-	no_errors
IL21R	50615	genome.wustl.edu	36	16	27364072	27364072	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	16	27364072	27364072	G	A	SNP	IL21R	NM_021798	human	genbank	54_36p	1	reviewed	nonsense	c.759	p.W253*	0.08	NULL	superfamily_Fibronectin type III	-	no_errors
KIAA0556	23247	genome.wustl.edu	36	16	27696440	27696440	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	16	27696440	27696440	G	T	SNP	KIAA0556	NM_015202	human	genbank	54_36p	1	validated	silent	c.4560	p.V1520	1	NULL	superfamily_Osmotin thaumatin-like protein;superfamily_Galactose-binding domain-like	-	no_errors
ITGAD	3681	genome.wustl.edu	36	16	31320973	31320973	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	16	31320973	31320973	T	C	SNP	ITGAD	NM_005353	human	genbank	54_36p	1	validated	missense	c.464	p.I155T	1	HMMPfam_VWA	HMMPfam_VWA;HMMPfam_Integrin_alpha;HMMPfam_FG-GAP;HMMPfam_Integrin_alpha2;superfamily_vWA-like;superfamily_Integrin domains;superfamily_Integrin alpha N-terminal domain	-	no_errors
TRPV3	162514	genome.wustl.edu	36	17	3371026	3371026	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	17	3371026	3371026	A	C	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	missense	c.1801	p.F601V	1	HMMPfam_Ion_trans	HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_Ion_trans;superfamily_Voltage-gated potassium channels	-	no_errors
ACTG1	71	genome.wustl.edu	36	17	77092914	77092914	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	17	77092914	77092914	A	T	SNP	ACTG1	NM_001614	human	genbank	54_36p	-1	reviewed	missense	c.697	p.S233T	1	HMMPfam_Actin	HMMPfam_Actin;superfamily_Actin-like ATPase domain	-	no_errors
HGS	9146	genome.wustl.edu	36	17	77263777	77263777	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	17	77263777	77263777	G	A	SNP	HGS	NM_004712	human	genbank	54_36p	1	provisional	silent	c.153	p.K51	1	HMMPfam_VHS	HMMPfam_FYVE;HMMPfam_VHS;HMMPfam_UIM;superfamily_FYVE/PHD zinc finger;superfamily_ENTH/VHS domain	-	no_errors
SKA1	220134	genome.wustl.edu	36	18	46171614	46171614	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	18	46171614	46171614	G	A	SNP	C18orf24	NM_001039535	human	genbank	54_36p	1	validated	missense	c.572	p.R191K	1	HMMPfam_DUF1395	HMMPfam_DUF1395	-	no_errors
EMR3	84658	genome.wustl.edu	36	19	14618991	14618991	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	19	14618991	14618991	A	C	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	splice_site	c.882+2	e8+2	0.86	-	-	-	no_errors
ZNF536	9745	genome.wustl.edu	36	19	35628128	35628128	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	19	35628128	35628128	T	A	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	missense	c.1819	p.F607I	1	NULL	-	-	no_errors
PLA2G4C	8605	genome.wustl.edu	36	19	53294818	53294818	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	19	53294818	53294818	G	T	SNP	PLA2G4C	NM_003706	human	genbank	54_36p	-1	provisional	silent	c.369	p.T123	0.25	NULL	-	-	no_errors
SCN2A	6326	genome.wustl.edu	36	2	165878837	165878837	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	2	165878837	165878837	G	A	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	silent	c.1356	p.Q452	1	NULL	HMMPfam_IQ;HMMPfam_Ion_trans;HMMPfam_Na_trans_assoc;superfamily_EF-hand;superfamily_Voltage-gated potassium channels	-	no_errors
XIRP2	129446	genome.wustl.edu	36	2	167813024	167813024	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	2	167813024	167813024	A	G	SNP	XIRP2	NM_152381	human	genbank	54_36p	1	validated	silent	c.6876	p.P2292	1	NULL	-	-	no_errors
SLC11A1	6556	genome.wustl.edu	36	2	218967704	218967704	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	2	218967704	218967704	C	A	SNP	SLC11A1	NM_000578	human	genbank	54_36p	1	reviewed	silent	c.1494	p.G498	0.05	NULL	HMMPfam_Nramp	-	no_errors
NRXN1	9378	genome.wustl.edu	36	2	50172113	50172113	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	2	50172113	50172113	C	T	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	silent	c.3570	p.K1190	0.99	HMMPfam_Laminin_G_2	HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_EGF/Laminin	-	no_errors
REL	5966	genome.wustl.edu	36	2	60972423	60972423	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	2	60972423	60972423	G	C	SNP	REL	NM_002908	human	genbank	54_36p	1	validated	missense	c.112	p.E38Q	1	HMMPfam_RHD	HMMPfam_TIG;superfamily_p53-like transcription factors;HMMPfam_RHD;superfamily_E set domains	-	no_errors
TRIM43	129868	genome.wustl.edu	36	2	95625790	95625790	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	2	95625790	95625790	G	C	SNP	TRIM43	NM_138800	human	genbank	54_36p	1	provisional	missense	c.621	p.E207D	0	NULL	-	-	no_errors
SEC62	7095	genome.wustl.edu	36	3	171176123	171176123	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	3	171176123	171176123	G	C	SNP	SEC62	NM_003262	human	genbank	54_36p	1	reviewed	missense	c.70	p.V24L	1	NULL	-	-	no_errors
THPO	7066	genome.wustl.edu	36	3	185573473	185573473	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	3	185573473	185573473	A	G	SNP	THPO	NM_000460	human	genbank	54_36p	-1	reviewed	missense	c.584	p.L195P	0.95	NULL	-	-	no_errors
ADH1C	126	genome.wustl.edu	36	4	100488002	100488002	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	4	100488002	100488002	G	A	SNP	ADH1C	NM_000669	human	genbank	54_36p	-1	reviewed	silent	c.43	p.L15	1	NULL	superfamily_GroES-like;HMMPfam_ADH_zinc_N;HMMPfam_ADH_N;superfamily_NAD(P)-binding Rossmann-fold domains	-	pseudogene
ACCN5	51802	genome.wustl.edu	36	4	156994844	156994844	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	4	156994844	156994844	A	T	SNP	ACCN5	NM_017419	human	genbank	54_36p	-1	reviewed	missense	c.420	p.H140Q	0.18	NULL	-	-	no_errors
FNIP1	96459	genome.wustl.edu	36	5	131042725	131042725	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	5	131042725	131042725	T	G	SNP	FNIP1	NM_133372	human	genbank	54_36p	-1	validated	missense	c.1245	p.E415D	1	NULL	-	-	no_errors
LIX1	167410	genome.wustl.edu	36	5	96458274	96458274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	5	96458274	96458274	C	T	SNP	LIX1	NM_153234	human	genbank	54_36p	-1	validated	missense	c.557	p.R186Q	1	NULL	-	-	no_errors
ARMC2	84071	genome.wustl.edu	36	6	109304169	109304169	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	6	109304169	109304169	T	A	SNP	ARMC2	NM_032131	human	genbank	54_36p	1	validated	missense	c.594	p.D198E	0.05	NULL	-	-	no_errors
HIVEP1	3096	genome.wustl.edu	36	6	12271558	12271558	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	6	12271558	12271558	A	C	SNP	HIVEP1	NM_002114	human	genbank	54_36p	1	validated	silent	c.7035	p.A2345	0	NULL	-	-	no_errors
HIST1H2AG	8969	genome.wustl.edu	36	6	27208837	27208837	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	6	27208837	27208837	G	T	SNP	HIST1H2AG	NM_021064	human	genbank	54_36p	1	reviewed	missense	c.8	p.G3V	1	NULL	-	-	no_errors
OR14J1	442191	genome.wustl.edu	36	6	29383386	29383386	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	6	29383386	29383386	G	A	SNP	OR14J1	NM_030946	human	genbank	54_36p	1	provisional	missense	c.941	p.C314Y	0	NULL	-	-	no_errors
RPP40	10799	genome.wustl.edu	36	6	4944007	4944007	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	6	4944007	4944007	C	T	SNP	RPP40	NM_006638	human	genbank	54_36p	-1	validated	nonsense	c.501	p.W167*	1	NULL	-	-	no_errors
ICK	22858	genome.wustl.edu	36	6	52986476	52986476	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	6	52986476	52986476	C	A	SNP	ICK	NM_014920	human	genbank	54_36p	-1	reviewed	missense	c.1095	p.Q365H	0.06	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
SLC26A3	1811	genome.wustl.edu	36	7	107204215	107204215	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	7	107204215	107204215	G	T	SNP	SLC26A3	NM_000111	human	genbank	54_36p	-1	reviewed	missense	c.1595	p.P532Q	0.99	NULL	-	-	no_errors
ZNF425	155054	genome.wustl.edu	36	7	148432952	148432952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	7	148432952	148432952	C	T	SNP	ZNF425	NM_001001661	human	genbank	54_36p	-1	provisional	missense	c.944	p.C315Y	0	HMMPfam_zf-C2H2	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BMPER	168667	genome.wustl.edu	36	7	34159392	34159392	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	7	34159392	34159392	C	A	SNP	BMPER	NM_133468	human	genbank	54_36p	1	validated	silent	c.2040	p.V680	0.99	NULL	-	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10501913	10501913	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	8	10501913	10501913	C	A	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.7105	p.G2369C	0	NULL	HMMPfam_DCX;HMMPfam_S-antigen;superfamily_Doublecortin (DC)	-	no_errors
ASAP1	50807	genome.wustl.edu	36	8	131250458	131250458	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	8	131250458	131250458	T	A	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	nonsense	c.784	p.K262*	1	NULL	HMMPfam_ArfGap;superfamily_Pyk2-associated protein beta ARF-GAP domain;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PH;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_PH domain-like	-	no_errors
ZNF7	7553	genome.wustl.edu	36	8	146033605	146033605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	8	146033605	146033605	G	A	SNP	ZNF7	NM_003416	human	genbank	54_36p	1	validated	silent	c.156	p.E52	1	NULL	-	-	no_errors
MMP16	4325	genome.wustl.edu	36	8	89278518	89278518	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	8	89278518	89278518	T	C	SNP	MMP16	NM_005941	human	genbank	54_36p	-1	reviewed	missense	c.266	p.D89G	1	HMMPfam_PG_binding_1	"HMMPfam_Hemopexin;superfamily_Hemopexin-like domain;HMMPfam_Peptidase_M10;HMMPfam_PG_binding_1;superfamily_PGBD-like;superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ENSG00000159247	0	genome.wustl.edu	36	9	140190899	140190899	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	9	140190899	140190899	A	G	SNP	ENSG00000159247	ENST00000290377	human	ensembl	54_36p	1	known	missense	c.697	p.M233V	1	NULL	-	-	no_start_codon
NPR2	4882	genome.wustl.edu	36	9	35795826	35795826	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	9	35795826	35795826	G	C	SNP	NPR2	NM_003995	human	genbank	54_36p	1	reviewed	splice_site	c.2048-1	e14-1	1	-	-	-	no_errors
AFF2	2334	genome.wustl.edu	36	X	147856250	147856250	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f6f43d04-a9e3-48c8-a276-3bebcaf416d7	7018df4b-5eed-40c1-8e7c-a31b2b78c91a	X	147856250	147856250	T	C	SNP	AFF2	NM_002025	human	genbank	54_36p	1	validated	silent	c.3150	p.L1050	0.01	NULL	-	-	no_errors
