Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SLC16A4	9122	genome.wustl.edu	36	1	110725182	110725182	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	110725182	110725182	C	T	SNP	SLC16A4	NM_004696	human	genbank	54_36p	-1	provisional	silent	c.471	p.L157	1	NULL	-	-	no_errors
KCND3	3752	genome.wustl.edu	36	1	112131149	112131149	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	112131149	112131149	A	G	SNP	KCND3	NM_004980	human	genbank	54_36p	-1	reviewed	silent	c.1209	p.V403	0.98	NULL	-	-	no_errors
ARHGAP30	257106	genome.wustl.edu	36	1	159288936	159288936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	159288936	159288936	G	A	SNP	ARHGAP30	NM_001025598	human	genbank	54_36p	-1	validated	silent	c.858	p.V286	1	NULL	-	-	no_errors
USP21	27005	genome.wustl.edu	36	1	159397428	159397428	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	159397428	159397428	C	T	SNP	USP21	NM_001014443	human	genbank	54_36p	1	reviewed	missense	c.374	p.A125V	1	NULL	-	-	no_errors
MPZ	4359	genome.wustl.edu	36	1	159542580	159542580	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	159542580	159542580	G	C	SNP	MPZ	NM_000530	human	genbank	54_36p	-1	reviewed	missense	c.617	p.A206G	1	NULL	HMMPfam_V-set;superfamily_Immunoglobulin	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181796000	181796001	+	Missense_Mutation	DNP	TC	TC	GT	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	TC	TC	TC	GT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	181796000	181796001	TC	GT	DNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.1322_1321	p.E441T	0.006:0.005	NULL	HMMPfam_PB1;HMMPfam_TPR_1;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_TPR-like;superfamily_CAD  PB1 domains	-	no_errors
PPFIA4	8497	genome.wustl.edu	36	1	201299692	201299692	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	201299692	201299692	G	A	SNP	PPFIA4	NM_015053	human	genbank	54_36p	1	validated	missense	c.1470	p.M490I	1	HMMPfam_SAM_1	HMMPfam_SAM_1;superfamily_SAM/Pointed domain;HMMPfam_SAM_2	-	no_errors
KMO	8564	genome.wustl.edu	36	1	239798427	239798427	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	239798427	239798427	C	A	SNP	KMO	NM_003679	human	genbank	54_36p	1	validated	missense	c.814	p.L272I	0.99	NULL	HMMPfam_DAO;superfamily_FAD/NAD(P)-binding domain	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245137665	245137665	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	245137665	245137665	C	G	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.575	p.G192A	1	NULL	-	-	no_errors
GJB5	2709	genome.wustl.edu	36	1	34996257	34996257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	34996257	34996257	G	A	SNP	GJB5	NM_005268	human	genbank	54_36p	1	provisional	missense	c.739	p.D247N	0.86	NULL	-	-	no_errors
ST3GAL3	6487	genome.wustl.edu	36	1	44063084	44063084	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	44063084	44063084	C	G	SNP	ST3GAL3	NM_174963	human	genbank	54_36p	1	reviewed	missense	c.349	p.P117A		NULL	HMMPfam_Glyco_transf_29	-	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86270166	86270173	+	Frame_Shift_Del	DEL	CCGGAGGA	CCGGAGGA	-		Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	CCGGAGGA	CCGGAGGA	CCGGAGGA	-	CCGGAGGA	CCGGAGGA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	86270166	86270173	CCGGAGGA	-	DEL	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	frame_shift_del	c.2032_2025	p.P676fs	0.994:0.956:0.998:1.000:1.000:1.000:0.999:0.978	NULL	-	(deletion:cds_exon[86270149,86270193])	no_errors
ABCA4	24	genome.wustl.edu	36	1	94301362	94301362	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	1	94301362	94301362	C	A	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.1654	p.V552L	0.97	NULL	HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GRK5	2869	genome.wustl.edu	36	10	121083300	121083300	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	10	121083300	121083300	C	G	SNP	GRK5	ENST00000369106	human	ensembl	54_36p	1	known	missense	c.180	p.S60R		NULL	-	-	no_errors
ZMYND17	118490	genome.wustl.edu	36	10	74855969	74855969	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	10	74855969	74855969	C	T	SNP	ZMYND17	NM_001024593	human	genbank	54_36p	-1	validated	silent	c.675	p.P225	0.01	NULL	-	-	no_errors
FAM35A	54537	genome.wustl.edu	36	10	88920679	88920679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	10	88920679	88920679	C	G	SNP	FAM35A	NM_019054	human	genbank	54_36p	1	validated	missense	c.1931	p.A644G	1	NULL	-	-	no_errors
CADM1	23705	genome.wustl.edu	36	11	114593903	114593903	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	114593903	114593903	A	T	SNP	CADM1	NM_014333	human	genbank	54_36p	-1	validated	missense	c.740	p.I247N	1	NULL	HMMPfam_V-set;HMMPfam_ig;HMMPfam_C2-set_2;superfamily_Immunoglobulin	-	no_errors
VSIG2	23584	genome.wustl.edu	36	11	124125917	124125920	+	Frame_Shift_Del	DEL	GTCA	GTCA	-		Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	GTCA	GTCA	GTCA	-	GTCA	GTCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	124125917	124125920	GTCA	-	DEL	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	frame_shift_del	c.330_327	p.D110fs	0.066:0.117:0.122:0.118	NULL	-	(deletion:cds_exon[124125820,124126027])	no_errors
PAMR1	25891	genome.wustl.edu	36	11	35452801	35452801	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	35452801	35452801	G	C	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	missense	c.447	p.H149Q	1	HMMPfam_CUB	HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Trypsin;HMMPfam_EGF;superfamily_Trypsin-like serine proteases;superfamily_EGF/Laminin;superfamily_Complement control module/SCR domain	-	no_errors
OR5D16	390144	genome.wustl.edu	36	11	55363647	55363647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	55363647	55363647	G	A	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.844	p.V282M		NULL	-	-	no_errors
OR4D10	390197	genome.wustl.edu	36	11	59001705	59001705	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	59001705	59001705	T	C	SNP	OR4D10	NM_001004705	human	genbank	54_36p	1	provisional	missense	c.227	p.I76T	0.97	NULL	-	-	no_errors
MS4A15	219995	genome.wustl.edu	36	11	60287962	60287962	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	60287962	60287962	G	T	SNP	MS4A15	NM_001098835	human	genbank	54_36p	1	validated	missense	c.180	p.L60F		NULL	-	-	no_errors
RPLP0P2	113157	genome.wustl.edu	36	11	61161394	61161394	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	61161394	61161394	G	A	SNP	RPLP0P2	NR_002775	human	genbank	54_36p	1	inferred	rna	NULL	NULL	1	-	-	-	pseudogene
NRXN2	9379	genome.wustl.edu	36	11	64146987	64146987	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	64146987	64146987	G	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	silent	c.3987	p.P1329	1	NULL	HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
GAB2	9846	genome.wustl.edu	36	11	77612115	77612115	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	77612115	77612115	C	T	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	missense	c.1558	p.D520N	1	NULL	HMMPfam_PH;superfamily_PH domain-like	-	no_errors
TYR	7299	genome.wustl.edu	36	11	88564148	88564148	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	11	88564148	88564148	A	C	SNP	TYR	NM_000372	human	genbank	54_36p	1	reviewed	missense	c.950	p.D317A	1	HMMPfam_Tyrosinase	HMMPfam_Tyrosinase;superfamily_Di-copper centre-containing domain	-	no_errors
IFT81	28981	genome.wustl.edu	36	12	109065708	109065708	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	12	109065708	109065708	C	G	SNP	IFT81	NM_014055	human	genbank	54_36p	1	validated	missense	c.920	p.S307C	1	NULL	-	-	no_errors
UBC	7316	genome.wustl.edu	36	12	123964117	123964117	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	12	123964117	123964117	C	T	SNP	UBC	NM_021009	human	genbank	54_36p	-1	validated	missense	c.154	p.D52N	1	HMMPfam_ubiquitin	HMMPfam_ubiquitin;superfamily_Ubiquitin-like	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20777247	20777247	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	12	20777247	20777247	C	G	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1324	p.L442V	0.78	HMMPfam_OATP	HMMPfam_OATP;HMMPfam_Kazal_2;superfamily_Kazal-type serine protease inhibitors;superfamily_MFS general substrate transporter	-	no_errors
OR6C75	390323	genome.wustl.edu	36	12	54045559	54045559	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	12	54045559	54045559	T	A	SNP	OR6C75	NM_001005497	human	genbank	54_36p	1	provisional	missense	c.398	p.I133N	0.79	NULL	-	-	no_errors
LOC100128322	100128322	genome.wustl.edu	36	6	132189957	132189957	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	6	132189957	132189957	A	G	SNP	LOC100128322	XR_039280	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ARHGAP5	394	genome.wustl.edu	36	14	31631046	31631046	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	14	31631046	31631046	G	A	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	1	reviewed	missense	c.1420	p.V474I	1	NULL	HMMPfam_RhoGAP;HMMPfam_FF;superfamily_FF domain;superfamily_GTPase activation domain GAP;HMMPfam_Ras;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C14orf39	317761	genome.wustl.edu	36	14	59973399	59973399	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	14	59973399	59973399	G	C	SNP	C14orf39	NM_174978	human	genbank	54_36p	-1	validated	missense	c.1681	p.Q561E	1	NULL	-	-	no_errors
ZNF609	23060	genome.wustl.edu	36	15	62579042	62579042	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	15	62579042	62579042	G	A	SNP	ZNF609	NM_015042	human	genbank	54_36p	1	provisional	missense	c.371	p.R124H	1	NULL	-	-	no_errors
C15orf44	81556	genome.wustl.edu	36	15	63686706	63686706	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	15	63686706	63686706	G	A	SNP	C15orf44	NM_030800	human	genbank	54_36p	-1	predicted	silent	c.66	p.S22	0.75	NULL	-	-	no_errors
HCN4	10021	genome.wustl.edu	36	15	71404829	71404829	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	15	71404829	71404829	C	T	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.1600	p.V534M	1	NULL	-	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24712301	24712301	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	16	24712301	24712301	G	T	SNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.3182	p.G1061V	1	NULL	-	-	no_errors
DOC2A	8448	genome.wustl.edu	36	16	29928083	29928083	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	16	29928083	29928083	C	G	SNP	DOC2A	NM_003586	human	genbank	54_36p	-1	reviewed	missense	c.358	p.D120H	1	HMMPfam_C2	HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11613331	11613331	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	17	11613331	11613331	C	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	1	reviewed	silent	c.7512	p.N2504	0.96	NULL	HMMPfam_Dynein_heavy;superfamily_Acyl-CoA dehydrogenase C-terminal domain-like;HMMPfam_AAA_5;HMMPfam_DHC_N1;HMMPfam_DHC_N2;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RPL23A	6147	genome.wustl.edu	36	17	24074728	24074728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	17	24074728	24074728	G	C	SNP	RPL23A	NM_000984	human	genbank	54_36p	1	reviewed	missense	c.399	p.E133D	1	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518928	7518928	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	17	7518928	7518928	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.646	p.V216M	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
LOC100130518	100130518	genome.wustl.edu	36	19	22290347	22290347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	19	22290347	22290347	C	G	SNP	LOC100130518	XM_001719773	human	genbank	54_36p	1	model	missense	c.2405	p.T802S	0.96	NULL	-	-	no_errors
CREB3L3	84699	genome.wustl.edu	36	19	4108240	4108240	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	19	4108240	4108240	A	G	SNP	CREB3L3	NM_032607	human	genbank	54_36p	1	provisional	silent	c.405	p.T135		NULL	-	-	no_errors
ZNF320	162967	genome.wustl.edu	36	19	58078740	58078740	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	19	58078740	58078740	G	A	SNP	ZNF320	ENST00000391780	human	ensembl	54_36p	-1	known	missense	c.172	p.H58Y		NULL	-	-	no_start_codon
MUC16	94025	genome.wustl.edu	36	19	8929974	8929974	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	19	8929974	8929974	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.18472	p.Q6158K		NULL	HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8933137	8933137	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	19	8933137	8933137	C	G	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.15309	p.K5103N		NULL	HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain	-	no_errors
LCT	3938	genome.wustl.edu	36	2	136286558	136286558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	2	136286558	136286558	C	G	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	missense	c.2146	p.V716L	0.04	HMMPfam_Glyco_hydro_1	HMMPfam_Glyco_hydro_1;superfamily_(Trans)glycosidases	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	141174615	141174615	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	2	141174615	141174615	C	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.6473	p.C2158Y	1	HMMPfam_EGF	HMMPfam_Ldl_recept_a;HMMPfam_EGF;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_YWTD domain;HMMPfam_Ldl_recept_b;HMMPfam_NHL;superfamily_LDL receptor-like module	-	no_errors
APOB	338	genome.wustl.edu	36	2	21088665	21088665	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	2	21088665	21088665	A	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.4580	p.L1527H	0.04	NULL	HMMPfam_Vitellogenin_N;HMMPfam_DUF1081;HMMPfam_DUF1943	-	no_errors
NLRC4	58484	genome.wustl.edu	36	2	32328942	32328942	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	2	32328942	32328942	C	A	SNP	NLRC4	NM_021209	human	genbank	54_36p	-1	validated	missense	c.1495	p.V499L		NULL	-	-	no_errors
DYNC2LI1	51626	genome.wustl.edu	36	2	43864168	43864168	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	2	43864168	43864168	G	A	SNP	DYNC2LI1	NM_016008	human	genbank	54_36p	1	validated	silent	c.132	p.K44	1	NULL	-	-	no_errors
LHCGR	3973	genome.wustl.edu	36	2	48769227	48769227	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	2	48769227	48769227	C	T	SNP	LHCGR	ENST00000403273	human	ensembl	54_36p	-1	known	splice_site	c.948-1	e11-1	1	-	-	-	no_errors
VWA3B	200403	genome.wustl.edu	36	2	98170896	98170896	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	2	98170896	98170896	A	C	SNP	VWA3B	NM_144992	human	genbank	54_36p	1	provisional	silent	c.1338	p.A446	1	NULL	-	-	no_errors
OTOR	56914	genome.wustl.edu	36	20	16677556	16677556	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	20	16677556	16677556	G	A	SNP	OTOR	NM_020157	human	genbank	54_36p	1	reviewed	missense	c.160	p.D54N	1	NULL	-	-	no_errors
SEC14L3	266629	genome.wustl.edu	36	22	29188108	29188108	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	22	29188108	29188108	T	C	SNP	SEC14L3	NM_174975	human	genbank	54_36p	-1	reviewed	missense	c.736	p.T246A	1	HMMPfam_CRAL_TRIO	HMMPfam_EMP24_GP25L;HMMPfam_CRAL_TRIO;superfamily_CRAL/TRIO domain;HMMPfam_CRAL_TRIO_N;superfamily_CRAL/TRIO N-terminal domain;superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
KALRN	8997	genome.wustl.edu	36	3	125895955	125895955	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	3	125895955	125895955	C	G	SNP	KALRN	NM_001024660	human	genbank	54_36p	1	reviewed	missense	c.7492	p.P2498A	1	NULL	-	-	no_errors
PIK3CB	5291	genome.wustl.edu	36	3	139906020	139906020	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	3	139906020	139906020	A	C	SNP	PIK3CB	NM_006219	human	genbank	54_36p	-1	provisional	missense	c.1536	p.I512M	1	NULL	HMMPfam_PI3K_rbd;HMMPfam_PI3_PI4_kinase;HMMPfam_PI3Ka;HMMPfam_PI3K_C2;HMMPfam_PI3K_p85B;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Protein kinase-like (PK-like);superfamily_ARM repeat;superfamily_Ubiquitin-like	-	no_errors
SLC6A6	6533	genome.wustl.edu	36	3	14498336	14498336	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	3	14498336	14498336	G	C	SNP	SLC6A6	NM_003043	human	genbank	54_36p	1	validated	missense	c.1705	p.E569Q	0.66	NULL	-	-	no_errors
GORASP1	64689	genome.wustl.edu	36	3	39119205	39119205	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	3	39119205	39119205	G	A	SNP	GORASP1	NM_031899	human	genbank	54_36p	-1	reviewed	missense	c.316	p.R106C	0.96	NULL	-	-	no_errors
CCR3	1232	genome.wustl.edu	36	3	46282600	46282600	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	3	46282600	46282600	T	C	SNP	CCR3	NM_001837	human	genbank	54_36p	1	reviewed	missense	c.947	p.F316S	0.65	NULL	-	-	no_errors
TRAIP	10293	genome.wustl.edu	36	3	49860597	49860597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	3	49860597	49860597	G	C	SNP	TRAIP	NM_005879	human	genbank	54_36p	-1	reviewed	missense	c.139	p.P47A	1	HMMPfam_zf-C3HC4	zf-C3HC4;HMMPfam_zf-C3HC4	-	no_errors
FLNB	2317	genome.wustl.edu	36	3	58086364	58086364	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	3	58086364	58086364	G	C	SNP	FLNB	NM_001457	human	genbank	54_36p	1	validated	missense	c.3915	p.E1305D	1	HMMPfam_Filamin	HMMPfam_Filamin;HMMPfam_CH;superfamily_E set domains;superfamily_Calponin-homology domain CH-domain	-	no_errors
PI4K2B	55300	genome.wustl.edu	36	4	24879227	24879227	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	4	24879227	24879227	G	C	SNP	PI4K2B	NM_018323	human	genbank	54_36p	1	validated	missense	c.1143	p.L381F	1	HMMPfam_PI3_PI4_kinase	HMMPfam_PI3_PI4_kinase	-	no_errors
PCDHB12	56124	genome.wustl.edu	36	5	140570694	140570694	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	5	140570694	140570694	C	T	SNP	PCDHB12	NM_018932	human	genbank	54_36p	1	reviewed	silent	c.2031	p.A677	0	NULL	-	-	no_errors
ZNF354B	117608	genome.wustl.edu	36	5	178242706	178242706	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	5	178242706	178242706	G	A	SNP	ZNF354B	NM_058230	human	genbank	54_36p	1	validated	missense	c.647	p.C216Y	0.76	NULL	-	-	no_errors
HEATR7B2	133558	genome.wustl.edu	36	5	41068913	41068913	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	5	41068913	41068913	A	G	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	missense	c.2348	p.I783T	0.79	NULL	-	-	no_errors
AIM1	202	genome.wustl.edu	36	6	107075882	107075907	+	Frame_Shift_Del	DEL	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	-		Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	-	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	6	107075882	107075907	AGGCTAATCATATTGAAAGTGTTATT	-	DEL	AIM1	NM_001624	human	genbank	54_36p	1	validated	frame_shift_del	c.2882_2907	p.A962fs	0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.060:0.061:0.033:0.006:0.004:0.001:0.001:0.001:0.000:0.000:0.004:0.002	NULL	HMMPfam_Ricin_B_lectin,HMMPfam_Crystall,superfamily_Ricin B-like lectins,superfamily_gamma-Crystallin-like	(deletion:cds_exon[107073699,107076021])	no_errors
TCP11	6954	genome.wustl.edu	36	6	35194074	35194074	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	6	35194074	35194074	T	G	SNP	TCP11	NM_001093728	human	genbank	54_36p	-1	validated	missense	c.1501	p.T501P	0.45	NULL	-	-	no_errors
ZNF292	23036	genome.wustl.edu	36	6	88028184	88028184	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	6	88028184	88028184	G	T	SNP	ZNF292	NM_015021	human	genbank	54_36p	1	validated	missense	c.8118	p.M2706I	0.05	NULL	-	-	no_errors
RELN	5649	genome.wustl.edu	36	7	103001849	103001849	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	7	103001849	103001849	A	C	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.4437	p.D1479E	1	NULL	HMMPfam_BNR;HMMPfam_Reeler;HMMPfam_EGF_2	-	no_errors
SLC26A3	1811	genome.wustl.edu	36	7	107201769	107201769	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	7	107201769	107201769	T	C	SNP	SLC26A3	NM_000111	human	genbank	54_36p	-1	reviewed	missense	c.1839	p.I613M	0.04	NULL	-	-	no_errors
GTF2IRD2B	389524	genome.wustl.edu	36	7	74202557	74202557	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	7	74202557	74202557	A	G	SNP	GTF2IRD2B	NM_001003795	human	genbank	54_36p	1	reviewed	missense	c.2368	p.K790E	0.93	NULL	-	-	no_errors
CCDC146	57639	genome.wustl.edu	36	7	76741878	76741878	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	7	76741878	76741878	A	C	SNP	CCDC146	NM_020879	human	genbank	54_36p	1	validated	missense	c.1413	p.Q471H	1	NULL	-	-	no_errors
SAMD9L	219285	genome.wustl.edu	36	7	92599291	92599291	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	7	92599291	92599291	C	T	SNP	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	silent	c.3930	p.L1310		NULL	-	-	no_errors
RGS22	26166	genome.wustl.edu	36	8	101186797	101186797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	8	101186797	101186797	G	A	SNP	RGS22	NM_015668	human	genbank	54_36p	-1	validated	missense	c.35	p.T12I	0.34	NULL	-	-	no_errors
ENPP2	5168	genome.wustl.edu	36	8	120644337	120644337	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	8	120644337	120644337	G	T	SNP	ENPP2	NM_006209	human	genbank	54_36p	-1	reviewed	missense	c.2518	p.P840T	0.93	HMMPfam_Endonuclease_NS	HMMPfam_Somatomedin_B;HMMPfam_Endonuclease_NS;HMMPfam_Phosphodiest;superfamily_Alkaline phosphatase-like;superfamily_His-Me finger endonucleases;superfamily_Somatomedin B domain	-	no_errors
ARFGEF1	10565	genome.wustl.edu	36	8	68341919	68341919	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	8	68341919	68341919	T	C	SNP	ARFGEF1	NM_006421	human	genbank	54_36p	-1	reviewed	silent	c.1773	p.Q591	1	NULL	-	-	no_errors
CDH17	1015	genome.wustl.edu	36	8	95241475	95241475	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	8	95241475	95241475	C	A	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	missense	c.1451	p.S484I	1	HMMPfam_Cadherin	HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
ENSG00000222903	0	genome.wustl.edu	36	4	85828147	85828147	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	4	85828147	85828147	G	A	SNP	ENSG00000222903	ENST00000410971	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.99	-	-	-	no_errors
TRAF1	7185	genome.wustl.edu	36	9	122713453	122713453	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	9	122713453	122713453	C	T	SNP	TRAF1	NM_005658	human	genbank	54_36p	-1	reviewed	missense	c.865	p.V289I	0.015	NULL	-	-	no_errors
RPS6	6194	genome.wustl.edu	36	9	19369608	19369610	+	In_Frame_Del	DEL	GAT	GAT	-		Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	GAT	GAT	GAT	-	GAT	GAT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	9	19369608	19369610	GAT	-	DEL	RPS6	NM_001010	human	genbank	54_36p	-1	reviewed	in_frame_del	c.15_13	p.I5in_frame_del	1.000:1.000:1.000	HMMPfam_Ribosomal_S6e	HMMPfam_Ribosomal_S6e	(deletion:cds_exon[19369485,19369616])	no_errors
SPANXN3	139067	genome.wustl.edu	36	X	142424335	142424335	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	X	142424335	142424335	G	C	SNP	SPANXN3	NM_001009609	human	genbank	54_36p	-1	validated	missense	c.401	p.S134C	0.05	NULL	-	-	no_errors
XG	7499	genome.wustl.edu	36	X	2739383	2739383	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	X	2739383	2739383	T	C	SNP	XG	NM_175569	human	genbank	54_36p	1	reviewed	missense	c.416	p.M139T	0.02	NULL	-	-	no_errors
LOC648603	648603	genome.wustl.edu	36	X	48519651	48519652	+	RNA	DNP	CC	CC	AT	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	CC	CC	CC	AT	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	X	48519651	48519652	CC	AT	DNP	LOC648603	XR_038238	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
IQSEC2	23096	genome.wustl.edu	36	X	53300626	53300626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	X	53300626	53300626	C	T	SNP	IQSEC2	NM_015075	human	genbank	54_36p	-1	validated	silent	c.597	p.A199	0.59	NULL	HMMPfam_IQ;HMMPfam_Sec7;superfamily_Sec7 domain;superfamily_PH domain-like;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LAS1L	81887	genome.wustl.edu	36	X	64660776	64660776	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	28d236f6-dddc-48c2-be30-b1568a4d6055	e04c70ce-9ef3-41b0-b45e-73e1c22c8472	X	64660776	64660776	C	G	SNP	LAS1L	NM_031206	human	genbank	54_36p	-1	provisional	silent	c.1185	p.T395	1	NULL	-	-	no_errors
