Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
INTS3	65123	genome.wustl.edu	36	1	152009314	152009314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	152009314	152009314	G	C	SNP	INTS3	NM_023015	human	genbank	54_36p	1	validated	missense	c.2406	p.W802C	1	NULL	-	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152262372	152262372	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	152262372	152262372	A	T	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.4148	p.V1383E	0.99	NULL	-	-	no_errors
ACTL8	81569	genome.wustl.edu	36	1	18025359	18025359	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	18025359	18025359	C	A	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	missense	c.859	p.L287M		NULL	-	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188470230	188470230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	188470230	188470230	C	T	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.619	p.V207I	1	NULL	HMMPfam_MACPF	-	no_errors
SLC30A1	7779	genome.wustl.edu	36	1	209815995	209815995	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	209815995	209815995	A	C	SNP	SLC30A1	NM_021194	human	genbank	54_36p	-1	validated	missense	c.882	p.F294L	0.97	NULL	-	-	no_errors
ITPKB	3707	genome.wustl.edu	36	1	224990219	224990219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	224990219	224990219	G	A	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	missense	c.1564	p.R522C		NULL	HMMPfam_IPK;superfamily_SAICAR synthase-like	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245648896	245648896	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	245648896	245648896	C	G	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.177	p.I59M	0.93	NULL	-	-	no_errors
BAI2	576	genome.wustl.edu	36	1	31994579	31994579	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	31994579	31994579	G	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.446	p.T149N	1	NULL	-	-	no_errors
MARCKSL1	65108	genome.wustl.edu	36	1	32572997	32572997	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	32572997	32572997	G	A	SNP	MARCKSL1	NM_023009	human	genbank	54_36p	-1	validated	nonsense	c.376	p.Q126*	1	NULL	HMMPfam_MARCKS	-	no_errors
ADC	113451	genome.wustl.edu	36	1	33332896	33332896	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	33332896	33332896	G	C	SNP	ADC	NM_052998	human	genbank	54_36p	1	validated	missense	c.748	p.E250Q	1	HMMPfam_Orn_Arg_deC_N	HMMPfam_Orn_DAP_Arg_deC;HMMPfam_Orn_Arg_deC_N;superfamily_Alanine racemase C-terminal domain-like;superfamily_PLP-binding barrel	-	no_errors
HIVEP3	59269	genome.wustl.edu	36	1	41820483	41820483	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	41820483	41820483	A	G	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.2573	p.I858T	1	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC645291	645291	genome.wustl.edu	36	1	68401297	68401297	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	1	68401297	68401297	C	T	SNP	LOC645291	XR_017617	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
AKR1C1	1645	genome.wustl.edu	36	10	5004864	5004864	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	10	5004864	5004864	C	T	SNP	AKR1C1	NM_001353	human	genbank	54_36p	1	reviewed	silent	c.769	p.L257	1	HMMPfam_Aldo_ket_red	HMMPfam_Aldo_ket_red;superfamily_NAD(P)-linked oxidoreductase	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55625469	55625469	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	10	55625469	55625469	G	A	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	silent	c.1285	p.L429	1	HMMPfam_Cadherin	HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
DLG5	9231	genome.wustl.edu	36	10	79271717	79271731	+	In_Frame_Del	DEL	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	-	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	-	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	10	79271717	79271731	CAGCTCCACTTCGGT	-	DEL	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1365_1351	p.TEVEL451in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.936:1.000:1.000	NULL	-	(deletion:cds_exon[79271645;79271957])	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18699666	18699666	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	11	18699666	18699666	C	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	missense	c.370	p.V124L	0.99	HMMPfam_I-set	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;superfamily_Immunoglobulin	-	no_errors
SYT13	57586	genome.wustl.edu	36	11	45230638	45230638	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	11	45230638	45230638	G	C	SNP	SYT13	NM_020826	human	genbank	54_36p	-1	validated	missense	c.756	p.H252Q	0.99	HMMPfam_C2	HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
OR8H2	390151	genome.wustl.edu	36	11	55629539	55629539	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	11	55629539	55629539	T	G	SNP	OR8H2	NM_001005200	human	genbank	54_36p	1	provisional	missense	c.445	p.Y149D	0.396	NULL	-	-	no_errors
ABCC9	10060	genome.wustl.edu	36	12	21845258	21845258	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	12	21845258	21845258	C	T	SNP	ABCC9	NM_020297	human	genbank	54_36p	-1	reviewed	missense	c.4637	p.R1546H	1	NULL	-	-	no_errors
FGF23	8074	genome.wustl.edu	36	12	4349937	4349937	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	12	4349937	4349937	C	T	SNP	FGF23	NM_020638	human	genbank	54_36p	-1	reviewed	missense	c.589	p.A197T	0.255	NULL	HMMPfam_FGF,superfamily_Cytokine	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44519445	44519445	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	12	44519445	44519445	A	C	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.1397	p.K466T	1	NULL	-	-	no_errors
PCDH20	64881	genome.wustl.edu	36	13	60884438	60884438	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	13	60884438	60884438	G	T	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	silent	c.1714	p.R572	1	HMMPfam_Cadherin	HMMPfam_Cadherin;HMMPfam_Cadherin_2;superfamily_Cadherin-like	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76652359	76652359	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	13	76652359	76652359	T	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.4923	p.R1641S	1	NULL	HMMPfam_RCC1;superfamily_Galactose-binding domain-like;superfamily_RCC1/BLIP-II;HMMPfam_PHR;superfamily_E set domains;superfamily_ARM repeat;superfamily_RING/U-box	-	no_errors
RALGAPA1	253959	genome.wustl.edu	36	14	35166288	35166288	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	14	35166288	35166288	C	T	SNP	GARNL1	NM_194301	human	genbank	54_36p	-1	provisional	missense	c.5098	p.G1700R	1	NULL	-	-	no_errors
TRIP11	9321	genome.wustl.edu	36	14	91542437	91542437	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	14	91542437	91542437	G	A	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	missense	c.1636	p.L546F	0.32	NULL	"superfamily_Ribosomal protein L29 (L29p);superfamily_""Winged helix"" DNA-binding domain;superfamily_Spectrin repeat"	-	no_errors
LOC100130960	100130960	genome.wustl.edu	36	4	153937093	153937093	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	4	153937093	153937093	C	T	SNP	LOC100130960	XR_038000	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MYST1	84148	genome.wustl.edu	36	16	31039052	31039052	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	16	31039052	31039052	C	G	SNP	MYST1	NM_182958	human	genbank	54_36p	1	provisional	missense	c.256	p.R86G	1	NULL	-	-	no_errors
SLX4	84464	genome.wustl.edu	36	16	3579356	3579356	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	16	3579356	3579356	C	A	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	missense	c.4284	p.W1428C	0.08	NULL	-	-	no_errors
HEATR3	55027	genome.wustl.edu	36	16	48666996	48666996	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	16	48666996	48666996	G	T	SNP	HEATR3	NM_182922	human	genbank	54_36p	1	provisional	missense	c.636	p.Q212H	1	NULL	-	-	no_errors
USP7	7874	genome.wustl.edu	36	16	8898375	8898375	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	16	8898375	8898375	T	A	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	missense	c.2801	p.K934I	1	NULL	HMMPfam_UCH;HMMPfam_MATH;superfamily_TRAF domain-like;superfamily_Cysteine proteinases	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26686014	26686032	+	Frame_Shift_Del	DEL	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	-	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	-	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	17	26686014	26686032	ATGACTCCATGGCTGTCAA	-	DEL	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	frame_shift_del	c.5845_5863	p.M1949fs	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.993:0.953:1.000	NULL	-	(deletion:cds_exon[26685982;26686175])	no_errors
TUBG1	7283	genome.wustl.edu	36	17	38017659	38017659	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	17	38017659	38017659	G	T	SNP	TUBG1	NM_001070	human	genbank	54_36p	1	reviewed	missense	c.371	p.R124L	1	NULL	-	-	no_errors
ACADVL	37	genome.wustl.edu	36	17	7066241	7066241	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	17	7066241	7066241	C	T	SNP	ACADVL	NM_000018	human	genbank	54_36p	1	reviewed	silent	c.774	p.I258	1	HMMPfam_Acyl-CoA_dh_M	HMMPfam_Acyl-CoA_dh_1;HMMPfam_Acyl-CoA_dh_M;HMMPfam_Acyl-CoA_dh_N;superfamily_Acyl-CoA dehydrogenase C-terminal domain-like;superfamily_Acyl-CoA dehydrogenase NM domain-like	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518226	7518226	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	17	7518226	7518226	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.780	p.S261fs	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	(deletion:cds_exon[7518224;7518333])	no_errors
CCDC11	220136	genome.wustl.edu	36	18	46042428	46042428	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	18	46042428	46042428	T	A	SNP	CCDC11	NM_145020	human	genbank	54_36p	-1	validated	missense	c.229	p.S77C	0.01	NULL	-	-	no_errors
C18orf54	162681	genome.wustl.edu	36	18	50143231	50143231	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	18	50143231	50143231	C	G	SNP	C18orf54	NM_173529	human	genbank	54_36p	1	validated	missense	c.682	p.P228A	1	NULL	-	-	no_errors
KIAA0802	23255	genome.wustl.edu	36	18	8809131	8809131	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	18	8809131	8809131	G	A	SNP	KIAA0802	NM_015210	human	genbank	54_36p	1	predicted	silent	c.3030	p.K1010	1	NULL	-	-	no_errors
ZNF98	148198	genome.wustl.edu	36	19	22366456	22366456	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	19	22366456	22366456	G	A	SNP	ZNF98	NM_001098626	human	genbank	54_36p	-1	validated	missense	c.1421	p.S474F		NULL	-	-	no_errors
ZNF91	7644	genome.wustl.edu	36	19	23337109	23337109	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	19	23337109	23337109	C	G	SNP	ZNF91	NM_003430	human	genbank	54_36p	-1	validated	missense	c.512	p.R171T	0.083	NULL	HMMPfam_KRAB,HMMPfam_zf-C2H2,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MED29	55588	genome.wustl.edu	36	19	44574065	44574065	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	19	44574065	44574065	G	C	SNP	MED29	NM_017592	human	genbank	54_36p	1	provisional	missense	c.226	p.D76H	1	NULL	-	-	no_errors
SH3RF3	344558	genome.wustl.edu	36	2	109330603	109330603	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	109330603	109330603	C	T	SNP	SH3RF3	NM_001099289	human	genbank	54_36p	1	provisional	silent	c.615	p.Y205	0.54	NULL	-	-	no_stop_codon
FAM171B	165215	genome.wustl.edu	36	2	187335673	187335673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	187335673	187335673	G	A	SNP	FAM171B	NM_177454	human	genbank	54_36p	1	validated	missense	c.2359	p.E787K	0.92	NULL	-	-	no_errors
INPP1	3628	genome.wustl.edu	36	2	190942166	190942166	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	190942166	190942166	G	T	SNP	INPP1	NM_002194	human	genbank	54_36p	1	reviewed	missense	c.559	p.G187C	1	HMMPfam_Inositol_P	HMMPfam_Inositol_P;superfamily_Carbohydrate phosphatase	-	no_errors
LOC151457	151457	genome.wustl.edu	36	2	20303334	20303334	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	20303334	20303334	C	A	SNP	LOC151457	XR_016242	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KIF3C	3797	genome.wustl.edu	36	2	26057663	26057663	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	26057663	26057663	T	G	SNP	KIF3C	NM_002254	human	genbank	54_36p	-1	validated	missense	c.628	p.N210H	1	NULL	-	-	no_errors
RNASEH1	246243	genome.wustl.edu	36	2	3575858	3575858	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	3575858	3575858	G	A	SNP	RNASEH1	NM_002936	human	genbank	54_36p	-1	validated	silent	c.489	p.Y163	1	HMMPfam_RnaseH	HMMPfam_RnaseH;superfamily_L9 N-domain-like;superfamily_Ribonuclease H-like	-	no_errors
C2orf63	130162	genome.wustl.edu	36	2	55289342	55289342	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	55289342	55289342	C	G	SNP	C2orf63	NM_152385	human	genbank	54_36p	-1	validated	missense	c.823	p.G275R		NULL	-	-	no_errors
C2orf78	388960	genome.wustl.edu	36	2	73896646	73896646	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	73896646	73896646	A	G	SNP	C2orf78	NM_001080474	human	genbank	54_36p	1	predicted	silent	c.1788	p.V596	0.13	NULL	-	-	no_errors
SMYD1	150572	genome.wustl.edu	36	2	88164998	88164998	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	88164998	88164998	C	G	SNP	SMYD1	NM_198274	human	genbank	54_36p	1	provisional	silent	c.186	p.L62	1	NULL	-	-	no_errors
TMEM131	23505	genome.wustl.edu	36	2	97758903	97758903	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	2	97758903	97758903	T	C	SNP	TMEM131	NM_015348	human	genbank	54_36p	-1	validated	silent	c.4155	p.K1385	0.96	NULL	-	-	no_errors
NAPB	10801	genome.wustl.edu	36	20	23308089	23308089	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	20	23308089	23308089	G	T	SNP	NAPB	NM_022080	human	genbank	54_36p	-1	validated	missense	c.779	p.T260N	1	NULL	HMMPfam_NSF;superfamily_TPR-like	-	no_errors
ABCG1	9619	genome.wustl.edu	36	21	42583288	42583288	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	21	42583288	42583288	G	A	SNP	ABCG1	NM_004915	human	genbank	54_36p	1	reviewed	silent	c.1320	p.L440	0.85	NULL	-	-	no_errors
UBASH3A	53347	genome.wustl.edu	36	21	42711737	42711737	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	21	42711737	42711737	G	A	SNP	UBASH3A	NM_018961	human	genbank	54_36p	1	validated	silent	c.996	p.P332	0.75	HMMPfam_SH3_1	HMMPfam_UBA;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_UBA-like;HMMPfam_PGAM;superfamily_Phosphoglycerate mutase-like	-	no_errors
PCNT	5116	genome.wustl.edu	36	21	46676267	46676267	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	21	46676267	46676267	C	T	SNP	PCNT	NM_006031	human	genbank	54_36p	1	reviewed	nonsense	c.8461	p.Q2821*		NULL	-	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25077080	25077080	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	22	25077080	25077080	C	T	SNP	SEZ6L	NM_021115	human	genbank	54_36p	1	validated	silent	c.2470	p.L824	1	HMMPfam_Sushi	HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;superfamily_Complement control module/SCR domain	-	no_errors
APOBEC3D	140564	genome.wustl.edu	36	22	37757785	37757785	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	22	37757785	37757785	C	T	SNP	APOBEC3D	ENST00000216099	human	ensembl	54_36p	1	known	silent	c.903	p.A301	0.03	NULL	-	-	no_errors
CPT1B	1375	genome.wustl.edu	36	22	49358237	49358237	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	22	49358237	49358237	C	T	SNP	CPT1B	NM_004377	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.D429N	0.81	NULL	-	-	no_errors
GPR128	84873	genome.wustl.edu	36	3	101851320	101851320	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	3	101851320	101851320	T	A	SNP	GPR128	NM_032787	human	genbank	54_36p	1	provisional	missense	c.1358	p.V453D	0.3	NULL	-	-	no_errors
HEG1	57493	genome.wustl.edu	36	3	126215523	126215523	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	3	126215523	126215523	G	T	SNP	HEG1	NM_020733	human	genbank	54_36p	-1	validated	silent	c.1590	p.I530	0.12	NULL	-	-	no_errors
BCHE	590	genome.wustl.edu	36	3	167030102	167030102	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	3	167030102	167030102	A	G	SNP	BCHE	NM_000055	human	genbank	54_36p	-1	reviewed	missense	c.1414	p.F472L	1	HMMPfam_COesterase	HMMPfam_COesterase;HMMPfam_AChE_tetra;superfamily_alpha/beta-Hydrolases	-	no_errors
LOC131185	131185	genome.wustl.edu	36	3	18555915	18555915	+	RNA	SNP	G	T	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	3	18555915	18555915	G	T	SNP	LOC131185	XR_016694	human	genbank	54_36p	1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
TRANK1	9881	genome.wustl.edu	36	3	36872216	36872216	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	3	36872216	36872216	A	G	SNP	LBA1	NM_014831	human	genbank	54_36p	-1	validated	missense	c.2219	p.M740T	1	NULL	-	-	no_errors
NBEAL2	23218	genome.wustl.edu	36	3	47025493	47025493	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	3	47025493	47025493	G	A	SNP	NBEAL2	NM_015175	human	genbank	54_36p	1	validated	missense	c.8038	p.A2680T	0.011	NULL	-	-	no_errors
LOC339843	339843	genome.wustl.edu	36	3	99861734	99861734	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	3	99861734	99861734	C	T	SNP	LOC339843	XR_016598	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC441034	441034	genome.wustl.edu	36	4	113928956	113928956	+	RNA	SNP	A	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	4	113928956	113928956	A	G	SNP	LOC441034	XR_016809	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SETD7	80854	genome.wustl.edu	36	4	140652340	140652340	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	4	140652340	140652340	C	A	SNP	SETD7	NM_030648	human	genbank	54_36p	-1	validated	missense	c.1028	p.G343V	0.88	HMMPfam_SET	HMMPfam_SET;HMMPfam_MORN;superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain;superfamily_SET domain	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187867460	187867460	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	4	187867460	187867460	G	A	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	silent	c.516	p.S172	1	NULL	-	-	no_errors
CRMP1	1400	genome.wustl.edu	36	4	5893964	5893964	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	4	5893964	5893964	G	A	SNP	CRMP1	NM_001014809	human	genbank	54_36p	-1	reviewed	silent	c.1125	p.A375	0.25	HMMPfam_Amidohydro_1	HMMPfam_Amidohydro_1;superfamily_Composite domain of metallo-dependent hydrolases;superfamily_Metallo-dependent hydrolases	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13860741	13860741	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	5	13860741	13860741	T	C	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.7846	p.S2616G	1	NULL	-	-	no_errors
PCDHB10	56126	genome.wustl.edu	36	5	140554683	140554683	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	5	140554683	140554683	C	T	SNP	PCDHB10	NM_018930	human	genbank	54_36p	1	reviewed	nonsense	c.2374	p.R792*		NULL	-	-	no_errors
CDH10	1008	genome.wustl.edu	36	5	24547225	24547225	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	5	24547225	24547225	C	A	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	missense	c.970	p.D324Y	1	HMMPfam_Cadherin	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
PMCHL2	5370	genome.wustl.edu	36	5	70707956	70707956	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	5	70707956	70707956	C	T	SNP	PMCHL2	NR_003922	human	genbank	54_36p	1	validated	rna	NULL	NULL	0.96	-	-	-	pseudogene
RGNEF	64283	genome.wustl.edu	36	5	73178047	73178047	+	Silent	SNP	A	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	5	73178047	73178047	A	G	SNP	RGNEF	NM_001080479	human	genbank	54_36p	1	provisional	silent	c.1626	p.L542	0.98	NULL	-	-	no_errors
HIVEP1	3096	genome.wustl.edu	36	6	12230760	12230760	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	6	12230760	12230760	G	A	SNP	HIVEP1	NM_002114	human	genbank	54_36p	1	validated	missense	c.2746	p.G916R	0.074	NULL	-	-	no_errors
RNF182	221687	genome.wustl.edu	36	6	14086034	14086034	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	6	14086034	14086034	T	C	SNP	RNF182	NM_152737	human	genbank	54_36p	1	provisional	silent	c.705	p.V235	0.9	NULL	-	-	no_errors
GABBR1	2550	genome.wustl.edu	36	6	29696888	29696888	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	6	29696888	29696888	T	C	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	missense	c.1292	p.N431S	1	HMMPfam_ANF_receptor	HMMPfam_7tm_3;HMMPfam_Sushi;HMMPfam_ANF_receptor;superfamily_Periplasmic binding protein-like I;superfamily_Complement control module/SCR domain	-	no_errors
B3GALT4	8705	genome.wustl.edu	36	6	33353260	33353260	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	6	33353260	33353260	G	T	SNP	B3GALT4	NM_003782	human	genbank	54_36p	1	reviewed	missense	c.86	p.G29V	0.05	NULL	HMMPfam_Galactosyl_T	-	no_errors
BAK1	578	genome.wustl.edu	36	6	33651640	33651640	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	6	33651640	33651640	G	A	SNP	BAK1	NM_001188	human	genbank	54_36p	-1	reviewed	silent	c.114	p.Y38	1	NULL	-	-	no_errors
GPR22	2845	genome.wustl.edu	36	7	106901798	106901798	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	7	106901798	106901798	G	A	SNP	GPR22	NM_005295	human	genbank	54_36p	1	reviewed	silent	c.57	p.V19	1	NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
C7orf58	79974	genome.wustl.edu	36	7	120555707	120555707	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	7	120555707	120555707	G	C	SNP	C7orf58	NM_024913	human	genbank	54_36p	1	validated	silent	c.1338	p.L446	0.9	NULL	-	-	no_errors
EPHA1	2041	genome.wustl.edu	36	7	142802352	142802352	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	7	142802352	142802352	A	G	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	missense	c.2129	p.L710P	1	HMMPfam_Pkinase_Tyr	Ephrin_lbd;HMMPfam_Ephrin_lbd;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SAM_1;HMMPfam_SAM_1;fn3;HMMPfam_fn3	-	no_errors
NPVF	64111	genome.wustl.edu	36	7	25234538	25234538	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	7	25234538	25234538	T	A	SNP	NPVF	NM_022150	human	genbank	54_36p	-1	validated	missense	c.46	p.T16S	1	NULL	-	-	no_errors
PCLO	27445	genome.wustl.edu	36	7	82384027	82384027	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	7	82384027	82384027	T	A	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	missense	c.11211	p.Q3737H	1	NULL	-	-	no_errors
PENK	5179	genome.wustl.edu	36	8	57516417	57516417	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	8	57516417	57516417	C	G	SNP	PENK	NM_006211	human	genbank	54_36p	-1	validated	missense	c.772	p.E258Q	1	NULL	HMMPfam_Opiods_neuropep	-	no_errors
SETX	23064	genome.wustl.edu	36	9	134211475	134211475	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	9	134211475	134211475	G	T	SNP	SETX	NM_015046	human	genbank	54_36p	-1	reviewed	missense	c.382	p.R128S	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DHRSX	207063	genome.wustl.edu	36	X	2336807	2336807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	X	2336807	2336807	C	T	SNP	DHRSX	NM_145177	human	genbank	54_36p	-1	validated	missense	c.265	p.E89K	0.03	HMMPfam_adh_short	HMMPfam_adh_short;superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
MXRA5	25878	genome.wustl.edu	36	X	3251268	3251268	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	X	3251268	3251268	G	A	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.2458	p.P820S	0	NULL	HMMPfam_LRR_1,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
UBQLN2	29978	genome.wustl.edu	36	X	56607897	56607897	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	X	56607897	56607897	G	T	SNP	UBQLN2	NM_013444	human	genbank	54_36p	1	reviewed	missense	c.866	p.G289V	0.997	NULL	HMMPfam_UBA,HMMPfam_ubiquitin,superfamily_UBA-like,superfamily_XPC-binding domain,superfamily_ARM repeat,superfamily_Ubiquitin-like	-	no_errors
LPAR4	2846	genome.wustl.edu	36	X	77897941	77897941	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1d2bf111-910b-4ce9-8638-ab992b414e65	60102268-7f80-4d74-aab6-a2cdd0f221d6	X	77897941	77897941	G	T	SNP	LPAR4	NM_005296	human	genbank	54_36p	1	reviewed	missense	c.919	p.D307Y	1	NULL	-	-	no_errors
