Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND2	0	genome.wustl.edu	36	MT	4992	4992	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	MT	4992	4992	G	A	SNP	MT-ND2	ENST00000361453	human	ensembl	54_36p	+1	known	silent	c.522	p.Q174	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region
IFITM1	8519	genome.wustl.edu	36	11	304259	304259	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	11	304259	304259	A	T	SNP	IFITM1	NM_003641	human	genbank	54_36p	+1	validated	missense	c.89	p.E30V	0.003	HMMPfam_CD225	HMMPfam_CD225	-	no_errors
ADD1	118	genome.wustl.edu	36	4	2899834	2899834	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	4	2899834	2899834	C	A	SNP	ADD1	NM_014189	human	genbank	54_36p	+1	reviewed	missense	c.2093	p.P698H	0.001	NULL	superfamily_Aldolase_II_N,HMMPfam_Aldolase_II	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518234	7518234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	17	7518234	7518234	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.772	p.E258K	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
EMR3	84658	genome.wustl.edu	36	19	14613244	14613244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	19	14613244	14613244	C	T	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	missense	c.1235	p.R412Q	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
FBXL5	26234	genome.wustl.edu	36	4	15236689	15236689	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	4	15236689	15236689	C	T	SNP	FBXL5	NM_012161	human	genbank	54_36p	-1	reviewed	nonsense	c.1134	p.W378*	1.000	superfamily_RNI-like,HMMSmart_SM00367	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_RNI-like,HMMSmart_SM00367,HMMPfam_LRR_1	-	no_errors
CLTCL1	8218	genome.wustl.edu	36	22	17621626	17621626	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	22	17621626	17621626	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	54_36p	-1	known	silent	c.375	p.T125	0.927	superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin_propel	superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin_propel,HMMPfam_Clathrin-link,superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299	-	no_errors
MAPK7	5598	genome.wustl.edu	36	17	19225092	19225092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	17	19225092	19225092	G	A	SNP	MAPK7	NM_002749	human	genbank	54_36p	+1	reviewed	missense	c.977	p.R326H	0.416	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZNF626	199777	genome.wustl.edu	36	19	20599743	20599743	+	Silent	SNP	A	A	G	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	19	20599743	20599743	A	G	SNP	ZNF626	NM_001076675	human	genbank	54_36p	-1	validated	silent	c.780	p.D260	0.008	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GYS2	2998	genome.wustl.edu	36	12	21602460	21602460	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	12	21602460	21602460	G	C	SNP	GYS2	NM_021957	human	genbank	54_36p	-1	validated	missense	c.1363	p.P455A	1.000	HMMPfam_Glycogen_syn	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30376592	30376592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	10	30376592	30376592	C	T	SNP	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	silent	c.156	p.A52	0.000	NULL	NULL	-	no_errors
KRTAP15-1	254950	genome.wustl.edu	36	21	30734616	30734616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	21	30734616	30734616	G	A	SNP	KRTAP15-1	NM_181623	human	genbank	54_36p	+1	provisional	missense	c.100	p.A34T	0.527	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
MYST1	84148	genome.wustl.edu	36	16	31039162	31039162	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	16	31039162	31039162	T	A	SNP	MYST1	NM_182958	human	genbank	54_36p	+1	provisional	missense	c.288	p.F96L	1.000	HMMSmart_SM00298	HMMSmart_SM00298,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS	-	no_errors
TAF1L	138474	genome.wustl.edu	36	9	32624324	32624324	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	9	32624324	32624324	G	A	SNP	TAF1L	NM_153809	human	genbank	54_36p	-1	provisional	silent	c.1254	p.D418	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
CSMD2	114784	genome.wustl.edu	36	1	33849298	33849298	+	Silent	SNP	G	G	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	1	33849298	33849298	G	T	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	silent	c.6153	p.S2051	0.999	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors
GOLGA4	2803	genome.wustl.edu	36	3	37342323	37342323	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	3	37342323	37342323	A	C	SNP	GOLGA4	NM_002078	human	genbank	54_36p	+1	reviewed	missense	c.3942	p.E1314D	1.000	NULL	superfamily_Prefoldin,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_GRIP,HMMSmart_SM00755,superfamily_GRIP domain	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	38021613	38021613	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	12	38021613	38021613	C	T	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	missense	c.1843	p.E615K	1.000	superfamily_WD40 repeat-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40 repeat-like,superfamily_Prefoldin,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39822370	39822370	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	15	39822370	39822370	C	T	SNP	MGA	NM_001080541	human	genbank	54_36p	+1	provisional	silent	c.5067	p.V1689	1.000	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors
SLC38A2	54407	genome.wustl.edu	36	12	45046972	45046972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	12	45046972	45046972	C	T	SNP	SLC38A2	NM_018976	human	genbank	54_36p	-1	validated	missense	c.505	p.V169M	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
UBA1	7317	genome.wustl.edu	36	X	46953930	46953930	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	X	46953930	46953930	C	A	SNP	UBA1	ENST00000377269	human	ensembl	54_36p	+1	known	missense	c.247	p.L83M	0.002	NULL	HMMPfam_UBA_e1_thiolCys,superfamily_MoeB,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors
PCTK1	5127	genome.wustl.edu	36	X	46971037	46971037	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	X	46971037	46971037	T	C	SNP	PCTK1	NM_006201	human	genbank	54_36p	+1	reviewed	missense	c.1028	p.I343T	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PSG2	5670	genome.wustl.edu	36	19	48262574	48262574	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	19	48262574	48262574	A	T	SNP	PSG2	NM_031246	human	genbank	54_36p	-1	validated	missense	c.983	p.L328H	0.000	NULL	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
TUBGCP6	85378	genome.wustl.edu	36	22	49024642	49024642	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	22	49024642	49024642	A	G	SNP	TUBGCP6	NM_020461	human	genbank	54_36p	-1	reviewed	missense	c.374	p.V125A	0.000	NULL	HMMPfam_Spc97_Spc98	-	no_errors
SRP68	6730	genome.wustl.edu	36	17	71569211	71569211	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	17	71569211	71569211	G	T	SNP	SRP68	NM_014230	human	genbank	54_36p	-1	reviewed	missense	c.601	p.H201N	1.000	superfamily_TPR-like	superfamily_TPR-like	-	no_errors
GLUD1	2746	genome.wustl.edu	36	10	88801513	88801513	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	10	88801513	88801513	T	C	SNP	GLUD1	NM_005271	human	genbank	54_36p	-1	validated	missense	c.1652	p.N551S	1.000	superfamily_NAD(P)-bd	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	-	no_errors
MTERF	7978	genome.wustl.edu	36	7	91341435	91341435	+	Silent	SNP	G	G	C	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	7	91341435	91341435	G	C	SNP	MTERF	NM_006980	human	genbank	54_36p	-1	validated	silent	c.609	p.T203	0.959	HMMPfam_mTERF,HMMSmart_SM00733	HMMPfam_mTERF,HMMSmart_SM00733	-	no_errors
LOC441736	441736	genome.wustl.edu	36	15	100129730	100129730	+	RNA	SNP	A	A	G	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	15	100129730	100129730	A	G	SNP	LOC441736	XR_042320	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
NRK	203447	genome.wustl.edu	36	X	105043321	105043321	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	X	105043321	105043321	A	G	SNP	NRK	ENST00000243300	human	ensembl	54_36p	+1	known	missense	c.2270	p.N757S	1.000	superfamily_p53-like transcription factors	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108273517	108273517	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	13	108273517	108273517	C	T	SNP	MYO16	NM_015011	human	genbank	54_36p	+1	validated	silent	c.921	p.A307	0.267	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
CCDC54	84692	genome.wustl.edu	36	3	108579576	108579576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	3	108579576	108579576	C	T	SNP	CCDC54	NM_032600	human	genbank	54_36p	+1	provisional	missense	c.452	p.T151M	0.000	NULL	NULL	-	no_errors
CADPS2	93664	genome.wustl.edu	36	7	121820780	121820780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	7	121820780	121820780	C	T	SNP	CADPS2	NM_017954	human	genbank	54_36p	-1	validated	missense	c.2839	p.A947T	1.000	NULL	HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041	-	no_errors
KPRP	448834	genome.wustl.edu	36	1	150999763	150999763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	1	150999763	150999763	C	T	SNP	KPRP	NM_001025231	human	genbank	54_36p	+1	provisional	missense	c.1075	p.P359S	0.119	NULL	NULL	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151474754	151474754	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	7	151474754	151474754	C	G	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	splice_site	c.13895-1	e53-1	1.000	-	-	-	no_errors
ZNF275	10838	genome.wustl.edu	36	X	152265895	152265895	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	X	152265895	152265895	C	T	SNP	ZNF275	NM_001080485	human	genbank	54_36p	+1	validated	silent	c.726	p.C242	0.767	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC391126	391126	genome.wustl.edu	36	1	164055361	164055361	+	RNA	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	1	164055361	164055361	C	T	SNP	LOC391126	XR_017684	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DNM3	26052	genome.wustl.edu	36	1	170223550	170223550	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	1	170223550	170223550	C	T	SNP	DNM3	NM_015569	human	genbank	54_36p	+1	validated	nonsense	c.367	p.R123*	0.795	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_GED,HMMSmart_GED	-	no_errors
TNR	7143	genome.wustl.edu	36	1	173592177	173592177	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	1	173592177	173592177	G	A	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	missense	c.3019	p.R1007W	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
OR2M3	127062	genome.wustl.edu	36	1	246433516	246433516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	1	246433516	246433516	C	T	SNP	OR2M3	NM_001004689	human	genbank	54_36p	+1	provisional	missense	c.524	p.A175V	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
IL21R	50615	genome.wustl.edu	36	16	27363513	27363514	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	CC	CC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	16	27363513	27363514	CC	-	DEL	IL21R	NM_021798	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.657_658	p.P220fs	0.884:0.839	superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_S_F1	superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_S_F1	(deletion:cds_exon[27363364,27363541])	no_errors
CRKRS	51755	genome.wustl.edu	36	17	34927320	34927322	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	GAG	GAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	17	34927320	34927322	GAG	-	DEL	CRKRS	NM_016507	human	genbank	54_36p	+1	validated	in_frame_del	c.2948_2950	p.RE983in_frame_delQ	1.000:1.000:1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[34927219,34927335])	no_errors
CCDC6	8030	genome.wustl.edu	36	10	61234185	61234191	+	Frame_Shift_Del	DEL	AGGTGAT	AGGTGAT	-	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	AGGTGAT	AGGTGAT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	10	61234185	61234191	AGGTGAT	-	DEL	CCDC6	NM_005436	human	genbank	54_36p	-1	validated	frame_shift_del	c.1104_1098	p.I366fs	0.278:0.999:1.000:1.000:1.000:1.000:0.999	NULL	HMMPfam_DUF2046	(deletion:cds_exon[61234184,61234284])	no_errors
SLC27A6	28965	genome.wustl.edu	36	5	128329801	128329801	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-24-1842-01A-01W-0639-09	TCGA-24-1842-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	577edea6-f2dd-4b8f-b079-45c995e3d558	88e26722-56e8-4085-b90b-593c7f21f3e3	5	128329801	128329801	C	-	DEL	SLC27A6	NM_001017372	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.72	p.P25fs	1.000	NULL	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	(deletion:cds_exon[128329730,128330210])	no_errors
