Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND3	4537	genome.wustl.edu	36	MT	10198	10198	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	MT	10198	10198	G	A	SNP	MT-ND3	ENST00000361227	human	ensembl	54_36p	+1	known	missense	c.139	p.A47T	NULL	HMMPfam_Oxidored_q4	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region
PSMF1	9491	genome.wustl.edu	36	20	1093091	1093091	+	Silent	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	20	1093091	1093091	C	A	SNP	PSMF1	NM_006814	human	genbank	54_36p	+1	reviewed	silent	c.735	p.P245	1.000	HMMPfam_PI31_Prot_Reg	HMMPfam_PI31_Prot_Reg	-	no_errors
OR52M1	119772	genome.wustl.edu	36	11	4523364	4523364	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	11	4523364	4523364	A	G	SNP	OR52M1	NM_001004137	human	genbank	54_36p	+1	provisional	missense	c.368	p.D123G	1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR52E8	390079	genome.wustl.edu	36	11	5835016	5835016	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	11	5835016	5835016	G	T	SNP	OR52E8	NM_001005168	human	genbank	54_36p	-1	provisional	missense	c.493	p.L165M	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR52E5	390082	genome.wustl.edu	36	11	5878702	5878702	+	Silent	SNP	C	G	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	11	5878702	5878702	C	G	SNP	OR52E5	ENST00000316698	human	ensembl	54_36p	+1	known	silent	c.120	p.A40	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PMS2CL	441194	genome.wustl.edu	36	7	6743900	6743900	+	RNA	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	7	6743900	6743900	G	A	SNP	PMS2CL	NR_002217	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.316	-	-	-	pseudogene
LAMA1	284217	genome.wustl.edu	36	18	6940797	6940797	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	18	6940797	6940797	T	A	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.8381	p.D2794V	0.995	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514707	7514707	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	7514707	7514707	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.1045	p.E349*	1.000	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
CHD3	1107	genome.wustl.edu	36	17	7739071	7739071	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	7739071	7739071	G	C	SNP	CHD3	NM_001005271	human	genbank	54_36p	+1	reviewed	missense	c.1516	p.V506L	0.999	PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
WDR16	146845	genome.wustl.edu	36	17	9479479	9479479	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	9479479	9479479	G	A	SNP	WDR16	NM_145054	human	genbank	54_36p	+1	validated	silent	c.1353	p.Q451	0.999	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
S1PR2	9294	genome.wustl.edu	36	19	10196255	10196255	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	19	10196255	10196255	C	A	SNP	S1PR2	NM_004230	human	genbank	54_36p	-1	validated	missense	c.327	p.E109D	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PTCHD2	57540	genome.wustl.edu	36	1	11485465	11485465	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	11485465	11485465	C	T	SNP	PTCHD2	NM_020780	human	genbank	54_36p	+1	validated	missense	c.1240	p.R414C	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
GSTM1L	2945	genome.wustl.edu	36	3	12274332	12274332	+	RNA	SNP	A	A	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	3	12274332	12274332	A	T	SNP	GSTM1L	NR_003112	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.995	-	-	-	pseudogene
SPTLC3	55304	genome.wustl.edu	36	20	13046259	13046259	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	20	13046259	13046259	A	T	SNP	SPTLC3	NM_018327	human	genbank	54_36p	+1	validated	missense	c.1039	p.T347S	0.697	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
LOC644422	644422	genome.wustl.edu	36	17	16461104	16461104	+	RNA	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	16461104	16461104	C	T	SNP	LOC644422	XR_017541	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TAS1R2	80834	genome.wustl.edu	36	1	19058640	19058640	+	Silent	SNP	G	G	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	19058640	19058640	G	T	SNP	TAS1R2	NM_152232	human	genbank	54_36p	-1	validated	silent	c.102	p.L34	0.994	superfamily_SSF53822	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,superfamily_SSF57586,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_errors
SPAG5	10615	genome.wustl.edu	36	17	23936268	23936268	+	Silent	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	23936268	23936268	C	A	SNP	SPAG5	NM_006461	human	genbank	54_36p	-1	reviewed	silent	c.2046	p.V682	0.362	NULL	NULL	-	no_errors
CRYBA4	1413	genome.wustl.edu	36	22	25354284	25354284	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	22	25354284	25354284	G	C	SNP	CRYBA4	NM_001886	human	genbank	54_36p	+1	reviewed	missense	c.333	p.E111D	1.000	superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg	superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg	-	no_errors
BTNL2	56244	genome.wustl.edu	36	6	32478729	32478729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	6	32478729	32478729	C	T	SNP	BTNL2	NM_019602	human	genbank	54_36p	-1	validated	missense	c.670	p.V224I	0.000	superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00407	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMSmart_SM00407	-	no_errors
KIAA1755	85449	genome.wustl.edu	36	20	36303275	36303275	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	20	36303275	36303275	G	T	SNP	KIAA1755	NM_001029864	human	genbank	54_36p	-1	predicted	missense	c.672	p.D224E	0.002	NULL	superfamily_Spectrin repeat	-	no_errors
KRTAP4-6	81871	genome.wustl.edu	36	17	36549882	36549882	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	36549882	36549882	C	G	SNP	KRTAP4-6	XM_926610	human	genbank	54_36p	-1	model	missense	c.620	p.S207T	0.277	NULL	NULL	-	no_errors
KLHL11	55175	genome.wustl.edu	36	17	37264303	37264303	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	37264303	37264303	G	C	SNP	KLHL11	NM_018143	human	genbank	54_36p	-1	provisional	missense	c.1342	p.L448V	1.000	superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	-	no_errors
TLR1	7096	genome.wustl.edu	36	4	38475331	38475331	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	4	38475331	38475331	G	A	SNP	TLR1	NM_003263	human	genbank	54_36p	-1	reviewed	missense	c.1517	p.S506L	0.989	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Outer arm dynein light chain 1,HMMSmart_SM00364,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
TLR1	7096	genome.wustl.edu	36	4	38476795	38476795	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	4	38476795	38476795	C	A	SNP	TLR1	NM_003263	human	genbank	54_36p	-1	reviewed	missense	c.53	p.R18I	0.000	superfamily_L domain-like	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like,superfamily_Outer arm dynein light chain 1	-	no_errors
DNAH8	1769	genome.wustl.edu	36	6	39050214	39050214	+	Silent	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	6	39050214	39050214	G	C	SNP	DNAH8	NM_001371	human	genbank	54_36p	+1	validated	silent	c.12114	p.L4038	1.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
ZFP14	57677	genome.wustl.edu	36	19	41543181	41543181	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	19	41543181	41543181	G	A	SNP	ZFP14	NM_020917	human	genbank	54_36p	-1	provisional	silent	c.231	p.C77	0.002	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DGKH	160851	genome.wustl.edu	36	13	41681556	41681556	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	13	41681556	41681556	C	G	SNP	DGKH	NM_178009	human	genbank	54_36p	+1	reviewed	missense	c.2805	p.I935M	0.999	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors
IPO13	9670	genome.wustl.edu	36	1	44195471	44195471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	44195471	44195471	C	T	SNP	IPO13	NM_014652	human	genbank	54_36p	+1	reviewed	missense	c.1289	p.T430M	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors
MED29	55588	genome.wustl.edu	36	19	44574005	44574005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	19	44574005	44574005	C	T	SNP	MED29	NM_017592	human	genbank	54_36p	+1	provisional	missense	c.166	p.P56S	0.923	NULL	NULL	-	no_errors
KRTAP10-5	386680	genome.wustl.edu	36	21	44824321	44824321	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	21	44824321	44824321	C	G	SNP	KRTAP10-5	NM_198694	human	genbank	54_36p	-1	reviewed	missense	c.563	p.C188S	0.006	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
UROD	7389	genome.wustl.edu	36	1	45253614	45253614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	45253614	45253614	G	A	SNP	UROD	NM_000374	human	genbank	54_36p	+1	reviewed	missense	c.961	p.V321M	1.000	superfamily_UROD/MetE-like,HMMPfam_URO-D	superfamily_UROD/MetE-like,HMMPfam_URO-D,PatternScan_UROD_1,PatternScan_UROD_2	-	no_errors
CHD9	80205	genome.wustl.edu	36	16	51820453	51820453	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	16	51820453	51820453	C	G	SNP	CHD9	NM_025134	human	genbank	54_36p	+1	validated	missense	c.2226	p.I742M	0.997	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_BRK	-	no_errors
GPR137C	283554	genome.wustl.edu	36	14	52136691	52136691	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	14	52136691	52136691	C	A	SNP	GPR137C	NM_001099652	human	genbank	54_36p	+1	provisional	missense	c.599	p.T200N	1.000	NULL	NULL	-	no_errors
ITGA2	3673	genome.wustl.edu	36	5	52398838	52398838	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	5	52398838	52398838	C	T	SNP	ITGA2	NM_002203	human	genbank	54_36p	+1	reviewed	nonsense	c.2077	p.Q693*	0.936	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
ITIH5L	347365	genome.wustl.edu	36	X	54802029	54802029	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	X	54802029	54802029	C	T	SNP	ITIH5L	NM_198510	human	genbank	54_36p	-1	provisional	silent	c.1203	p.T401	0.334	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
SSRP1	6749	genome.wustl.edu	36	11	56850475	56850475	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	11	56850475	56850475	C	T	SNP	SSRP1	NM_003146	human	genbank	54_36p	-1	reviewed	silent	c.2112	p.A704	0.265	NULL	HMMPfam_SSrecog,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
ZNF479	90827	genome.wustl.edu	36	7	57192236	57192236	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	7	57192236	57192236	T	A	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	missense	c.828	p.Q276H	0.006	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
RPSAP52	0	genome.wustl.edu	36	12	64438475	64438475	+	Silent	SNP	T	T	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	12	64438475	64438475	T	C	SNP	RPSAP52	ENST00000379004	human	ensembl	54_36p	-1	known	silent	c.315	p.Q105	1.000	NULL	NULL	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69728753	69728753	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	16	69728753	69728753	T	C	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.845	p.E282G	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GOLGA6B	55889	genome.wustl.edu	36	15	70741851	70741851	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	15	70741851	70741851	T	C	SNP	GOLGA6B	ENST00000268079	human	ensembl	54_36p	+1	known	missense	c.1052	p.V351A	0.441	NULL	NULL	-	no_errors
TRHDE	29953	genome.wustl.edu	36	12	71255583	71255583	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	12	71255583	71255583	T	A	SNP	TRHDE	NM_013381	human	genbank	54_36p	+1	reviewed	missense	c.2180	p.L727Q	1.000	NULL	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors
CAPS2	84698	genome.wustl.edu	36	12	73973335	73973335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	12	73973335	73973335	C	T	SNP	CAPS2	NM_032606	human	genbank	54_36p	-1	validated	missense	c.485	p.R162Q	1.000	NULL	superfamily_SSF47473,HMMSmart_EFh	-	no_errors
LMO7	4008	genome.wustl.edu	36	13	75307452	75307452	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	13	75307452	75307452	T	A	SNP	LMO7	NM_005358	human	genbank	54_36p	+1	reviewed	missense	c.2463	p.D821E	0.993	NULL	superfamily_Calponin-homology,HMMSmart_CH,HMMPfam_CH,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
LHX8	431707	genome.wustl.edu	36	1	75379291	75379291	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	75379291	75379291	T	C	SNP	LHX8	NM_001001933	human	genbank	54_36p	+1	validated	missense	c.301	p.S101P	1.000	HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ROBO1	6091	genome.wustl.edu	36	3	78849125	78849125	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	3	78849125	78849125	G	A	SNP	ROBO1	NM_002941	human	genbank	54_36p	-1	reviewed	missense	c.907	p.P303S	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
VPS13A	23230	genome.wustl.edu	36	9	79174033	79174033	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	9	79174033	79174033	A	G	SNP	VPS13A	NM_033305	human	genbank	54_36p	+1	reviewed	splice_site	c.8554-2	e63-2	1.000	-	-	-	no_errors
LOC642585	0	genome.wustl.edu	36	X	80072558	80072558	+	RNA	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	X	80072558	80072558	C	A	SNP	LOC642585	XR_038848	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
BNC1	646	genome.wustl.edu	36	15	81717627	81717627	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	15	81717627	81717627	C	G	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.2556	p.E852D	0.997	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
SLITRK5	26050	genome.wustl.edu	36	13	87128473	87128473	+	Silent	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	13	87128473	87128473	G	C	SNP	SLITRK5	NM_015567	human	genbank	54_36p	+1	validated	silent	c.2829	p.P943	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors
BACH2	60468	genome.wustl.edu	36	6	90716962	90716962	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	6	90716962	90716962	G	A	SNP	BACH2	NM_021813	human	genbank	54_36p	-1	validated	silent	c.1584	p.Y528	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92232056	92232056	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	11	92232056	92232056	A	C	SNP	FAT3	NM_001008781	human	genbank	54_36p	+1	validated	missense	c.11578	p.K3860Q	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
PPP3CA	5530	genome.wustl.edu	36	4	102180708	102180708	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	4	102180708	102180708	T	G	SNP	PPP3CA	NM_000944	human	genbank	54_36p	-1	validated	missense	c.1195	p.K399Q	1.000	superfamily_Metallo-dependent phosphatases	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors
TCP11L2	255394	genome.wustl.edu	36	12	105229024	105229024	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	12	105229024	105229024	A	T	SNP	TCP11L2	NM_152772	human	genbank	54_36p	+1	provisional	missense	c.41	p.Q14L	1.000	NULL	HMMPfam_Tcp11	-	no_errors
COL4A6	1288	genome.wustl.edu	36	X	107334413	107334413	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	X	107334413	107334413	C	A	SNP	COL4A6	ENST00000394872	human	ensembl	54_36p	-1	known	nonsense	c.655	p.E219*	0.039	NULL	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108116456	108116456	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	13	108116456	108116456	G	A	SNP	MYO16	NM_015011	human	genbank	54_36p	+1	validated	missense	c.184	p.D62N	0.997	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
FAM102B	284611	genome.wustl.edu	36	1	108972945	108972945	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	108972945	108972945	G	A	SNP	FAM102B	NM_001010883	human	genbank	54_36p	+1	validated	silent	c.873	p.A291	0.991	NULL	HMMPfam_Eeig1	-	no_errors
GSTM4	2948	genome.wustl.edu	36	1	110003298	110003298	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	110003298	110003298	G	C	SNP	GSTM4	ENST00000369833	human	ensembl	54_36p	+1	known	missense	c.487	p.V163L	0.003	NULL	superfamily_Thiordxn-like_fd,HMMPfam_GST_N,superfamily_GST_C_like,HMMPfam_GST_C	-	no_errors
LRRN3	54674	genome.wustl.edu	36	7	110550761	110550761	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	7	110550761	110550761	G	T	SNP	LRRN3	NM_001099658	human	genbank	54_36p	+1	validated	missense	c.697	p.V233F	0.998	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMSmart_SM00013,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
LOC100128588	0	genome.wustl.edu	36	6	112754533	112754533	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	6	112754533	112754533	C	A	SNP	LOC100128588	XM_001723020	human	genbank	54_36p	-1	model	nonsense	c.112	p.E38*	0.916	HMMSmart_SM00443,HMMPfam_G-patch	HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113345143	113345143	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	8	113345143	113345143	T	C	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.9763	p.I3255V	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
CLIP1	6249	genome.wustl.edu	36	12	121428106	121428106	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	12	121428106	121428106	G	A	SNP	CLIP1	NM_002956	human	genbank	54_36p	-1	validated	missense	c.440	p.S147L	0.978	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121437744	121437744	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	7	121437744	121437744	A	T	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	+1	reviewed	missense	c.1408	p.I470L	0.000	NULL	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
SPAM1	6677	genome.wustl.edu	36	7	123387018	123387018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	7	123387018	123387018	C	T	SNP	SPAM1	NM_003117	human	genbank	54_36p	+1	reviewed	missense	c.1289	p.S430F	0.373	NULL	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat	-	no_errors
DTX3L	151636	genome.wustl.edu	36	3	123770324	123770324	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	3	123770324	123770324	G	C	SNP	DTX3L	NM_138287	human	genbank	54_36p	+1	validated	missense	c.698	p.S233T	0.000	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
OR8A1	390275	genome.wustl.edu	36	11	123945678	123945678	+	Silent	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	11	123945678	123945678	C	A	SNP	OR8A1	NM_001005194	human	genbank	54_36p	+1	provisional	silent	c.504	p.I168	0.041	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	125083962	125083962	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	2	125083962	125083962	T	A	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	+1	reviewed	missense	c.1868	p.I623N	1.000	superfamily_ConA_like_lec_gl,superfamily_Fibrinogen_a/b/g_C	PatternScan_FA58C_1,PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C	-	no_errors
FLJ30058	158763	genome.wustl.edu	36	X	130046674	130046674	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	X	130046674	130046674	T	C	SNP	FLJ30058	NM_144967	human	genbank	54_36p	+1	validated	missense	c.910	p.S304P	1.000	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
EPB41L2	2037	genome.wustl.edu	36	6	131263990	131263990	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	6	131263990	131263990	C	G	SNP	EPB41L2	NM_001431	human	genbank	54_36p	-1	validated	missense	c.953	p.R318P	1.000	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors
ASTE1	28990	genome.wustl.edu	36	3	132226652	132226652	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	3	132226652	132226652	G	T	SNP	ASTE1	NM_014065	human	genbank	54_36p	-1	validated	missense	c.189	p.F63L	1.000	HMMPfam_XPG_N,superfamily_SSF88723	HMMPfam_XPG_N,superfamily_SSF88723	-	no_errors
PCDHA13	56136	genome.wustl.edu	36	5	140243480	140243480	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	5	140243480	140243480	C	T	SNP	PCDHA13	NM_018904	human	genbank	54_36p	+1	reviewed	silent	c.1443	p.D481	0.962	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
SLITRK4	139065	genome.wustl.edu	36	X	142545448	142545448	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	X	142545448	142545448	C	T	SNP	SLITRK4	NM_173078	human	genbank	54_36p	-1	validated	silent	c.1143	p.K381	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors
TM4SF1	4071	genome.wustl.edu	36	3	150575958	150575958	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	3	150575958	150575958	G	A	SNP	TM4SF1	NM_014220	human	genbank	54_36p	-1	reviewed	silent	c.375	p.L125	0.000	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
FAT2	2196	genome.wustl.edu	36	5	150911307	150911307	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	5	150911307	150911307	T	G	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	missense	c.4210	p.I1404L	0.972	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
SPRR2F	6705	genome.wustl.edu	36	1	151351700	151351700	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	151351700	151351700	C	A	SNP	SPRR2F	NM_001014450	human	genbank	54_36p	-1	provisional	missense	c.134	p.C45F	0.821	NULL	NULL	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152132050	152132050	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	2	152132050	152132050	C	T	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.12931	p.A4311T	0.990	HMMSmart_SM00227	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156881610	156881610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	156881610	156881610	C	T	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.4186	p.E1396K	1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors
DARC	2532	genome.wustl.edu	36	1	157442362	157442362	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	157442362	157442362	C	T	SNP	DARC	NM_002036	human	genbank	54_36p	+1	reviewed	missense	c.509	p.T170I	0.118	NULL	NULL	-	no_errors
GFM1	85476	genome.wustl.edu	36	3	159847348	159847348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	3	159847348	159847348	C	T	SNP	GFM1	NM_024996	human	genbank	54_36p	+1	reviewed	missense	c.490	p.R164C	1.000	superfamily_SSF52540,HMMPfam_GTP_EFTU	superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160931996	160931996	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	6	160931996	160931996	G	T	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	missense	c.3757	p.L1253I	0.000	superfamily_Kringle-like	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
SMOC2	64094	genome.wustl.edu	36	6	168692670	168692670	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	6	168692670	168692670	G	A	SNP	SMOC2	NM_022138	human	genbank	54_36p	+1	provisional	missense	c.608	p.R203H	0.994	superfamily_Thyroglobulin_1	superfamily_Thyroglobulin_1,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg	-	no_errors
DDX60L	91351	genome.wustl.edu	36	4	169574448	169574448	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	4	169574448	169574448	C	A	SNP	DDX60L	NM_001012967	human	genbank	54_36p	-1	validated	missense	c.2686	p.V896F	1.000	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DEAD	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178328735	178328735	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	178328735	178328735	A	T	SNP	CEP350	NM_014810	human	genbank	54_36p	+1	reviewed	missense	c.6869	p.Q2290L	0.434	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179320190	179320190	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	2	179320190	179320190	C	G	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	missense	c.15182	p.R5061T	1.000	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
HECW2	57520	genome.wustl.edu	36	2	196790011	196790011	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	2	196790011	196790011	C	G	SNP	HECW2	NM_020760	human	genbank	54_36p	-1	provisional	missense	c.4460	p.R1487T	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
TFRC	7037	genome.wustl.edu	36	3	197263426	197263426	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	3	197263426	197263426	G	A	SNP	TFRC	NM_003234	human	genbank	54_36p	-1	validated	silent	c.2067	p.Y689	0.999	superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	superfamily_Zn-dependent exopeptidases,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	-	no_errors
RABIF	5877	genome.wustl.edu	36	1	201116906	201116906	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	201116906	201116906	G	A	SNP	RABIF	NM_002871	human	genbank	54_36p	-1	provisional	silent	c.195	p.L65	0.877	superfamily_Mss4-like,HMMPfam_Mss4	superfamily_Mss4-like,HMMPfam_Mss4	-	no_errors
DTL	51514	genome.wustl.edu	36	1	210340991	210340991	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	210340991	210340991	G	C	SNP	DTL	NM_016448	human	genbank	54_36p	+1	validated	missense	c.2036	p.S679T	0.043	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	213981414	213981414	+	Silent	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	213981414	213981414	C	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	silent	c.11637	p.G3879	0.044	superfamily_Fibronectin type III,HMMSmart_SM00060	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237940390	237940390	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	2	237940390	237940390	G	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.5179	p.R1727W	0.125	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
OR2G6	391211	genome.wustl.edu	36	1	246751628	246751628	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	1	246751628	246751628	C	A	SNP	OR2G6	NM_001013355	human	genbank	54_36p	+1	validated	missense	c.58	p.Q20K	0.007	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C12orf59	120939	genome.wustl.edu	36	12	10223482	10223482	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	12	10223482	10223482	G	-	DEL	C12orf59	NM_153022	human	genbank	54_36p	+1	validated	frame_shift_del	c.26	p.C9fs	0.001	NULL	NULL	(deletion:cds_exon[10223457,10223494])	no_errors
KRTAP4-8	0	genome.wustl.edu	36	17	36494308	36494322	+	In_Frame_Del	DEL	CTGCTGCCGCCCCAG	CTGCTGCCGCCCCAG	-	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	CTGCTGCCGCCCCAG	CTGCTGCCGCCCCAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	17	36494308	36494322	CTGCTGCCGCCCCAG	-	DEL	KRTAP4-8	ENST00000391417	human	ensembl	54_36p	+1	known	in_frame_del	c.324_338	p.PSCCR112in_frame_del	0.808:0.872:0.863:0.838:0.614:0.280:0.041:0.000:0.000:0.000:0.003:0.010:0.495:0.494:0.565	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	(deletion:cds_exon[36493985,36494452])	no_errors
JARID1C	8242	genome.wustl.edu	36	X	53239121	53239121	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-24-1843-01A-01W-0639-09	TCGA-24-1843-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22cd9936-9f48-447f-99b3-619f703e15c7	ed14c55e-68c3-4245-ab35-6401a92781ef	X	53239121	53239121	G	-	DEL	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.4436	p.P1479fs	0.998	NULL	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1	(deletion:cds_exon[53238874,53239239])	no_errors
