Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SLC22A23	63027	genome.wustl.edu	36	6	3232324	3232324	+	Silent	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	6	3232324	3232324	C	G	SNP	SLC22A23	NM_021945	human	genbank	54_36p	-1	validated	silent	c.471	p.S157	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
OR1E1	8387	genome.wustl.edu	36	17	3248408	3248408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	3248408	3248408	C	T	SNP	OR1E1	NM_003553	human	genbank	54_36p	-1	validated	missense	c.47	p.G16D	0.912	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ALOX15	246	genome.wustl.edu	36	17	4488676	4488676	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	4488676	4488676	C	A	SNP	ALOX15	NM_001140	human	genbank	54_36p	-1	validated	missense	c.595	p.D199Y	0.134	superfamily_Lipoxygenase,HMMPfam_Lipoxygenase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors
MINK1	50488	genome.wustl.edu	36	17	4740629	4740629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	4740629	4740629	C	T	SNP	MINK1	NM_153827	human	genbank	54_36p	+1	reviewed	missense	c.3734	p.A1245V	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CYTH3	9265	genome.wustl.edu	36	7	6179864	6179864	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	7	6179864	6179864	G	T	SNP	CYTH3	NM_004227	human	genbank	54_36p	-1	reviewed	missense	c.394	p.Q132K	1.000	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
IL33	90865	genome.wustl.edu	36	9	6243593	6243593	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	6243593	6243593	A	T	SNP	IL33	NM_033439	human	genbank	54_36p	+1	validated	missense	c.511	p.N171Y	0.036	NULL	NULL	-	no_errors
uc001mec.1	0	genome.wustl.edu	36	11	6549554	6549554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	11	6549554	6549554	C	T	SNP	uc001mec.1	ENST00000354346	human	ensembl	54_36p	+1	known	missense	c.3095	p.S1032F	0.292	HMMPfam_Dynein_heavy	HMMPfam_Dynein_heavy	-	no_start_codon
C3AR1	719	genome.wustl.edu	36	12	8103922	8103922	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	12	8103922	8103922	G	T	SNP	C3AR1	NM_004054	human	genbank	54_36p	-1	validated	missense	c.127	p.L43M	0.567	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GRIN2A	2903	genome.wustl.edu	36	16	9765927	9765927	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	16	9765927	9765927	T	G	SNP	GRIN2A	NM_000833	human	genbank	54_36p	-1	reviewed	missense	c.2975	p.N992T	1.000	HMMPfam_NMDAR2_C	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors
LOC100132755	0	genome.wustl.edu	36	Y	10647825	10647825	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	Y	10647825	10647825	T	C	SNP	LOC100132755	XM_001713806	human	genbank	54_36p	+1	model	missense	c.20	p.I7T	1.000	NULL	NULL	-	no_errors
EIF4G2	1982	genome.wustl.edu	36	11	10781230	10781230	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	11	10781230	10781230	G	T	SNP	EIF4G2	NM_001418	human	genbank	54_36p	-1	reviewed	missense	c.919	p.H307N	1.000	superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543	superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,HMMSmart_SM00515,HMMPfam_W2	-	no_start_codon
TAS2R7	50837	genome.wustl.edu	36	12	10845947	10845947	+	Silent	SNP	T	T	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	12	10845947	10845947	T	G	SNP	TAS2R7	NM_023919	human	genbank	54_36p	-1	reviewed	silent	c.490	p.R164	0.000	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
DOCK6	57572	genome.wustl.edu	36	19	11173613	11173613	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	19	11173613	11173613	G	A	SNP	DOCK6	NM_020812	human	genbank	54_36p	-1	validated	silent	c.5640	p.H1880	0.999	HMMPfam_Ded_cyto	HMMPfam_Ded_cyto	-	no_errors
GREB1	9687	genome.wustl.edu	36	2	11670157	11670157	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	11670157	11670157	G	A	SNP	GREB1	NM_014668	human	genbank	54_36p	+1	reviewed	missense	c.3092	p.G1031E	1.000	NULL	NULL	-	no_errors
CLCN6	1185	genome.wustl.edu	36	1	11811232	11811232	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	11811232	11811232	G	A	SNP	CLCN6	NM_001286	human	genbank	54_36p	+1	reviewed	missense	c.1085	p.R362H	1.000	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors
CEP192	55125	genome.wustl.edu	36	18	13114739	13114739	+	Silent	SNP	A	A	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	18	13114739	13114739	A	G	SNP	CEP192	NM_032142	human	genbank	54_36p	+1	validated	silent	c.5796	p.R1932	0.991	NULL	NULL	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13912658	13912658	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	5	13912658	13912658	G	C	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	nonsense	c.4853	p.S1618*	0.999	HMMPfam_DHC_N2	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
COLQ	8292	genome.wustl.edu	36	3	15472420	15472420	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	15472420	15472420	G	A	SNP	COLQ	NM_005677	human	genbank	54_36p	-1	reviewed	silent	c.1185	p.D395	0.779	NULL	HMMPfam_Collagen	-	no_errors
OR10H4	126541	genome.wustl.edu	36	19	15921230	15921230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	19	15921230	15921230	G	A	SNP	OR10H4	NM_001004465	human	genbank	54_36p	+1	validated	missense	c.413	p.S138N	0.430	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CECR2	27443	genome.wustl.edu	36	22	16396828	16396828	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	22	16396828	16396828	C	T	SNP	CECR2	ENST00000400585	human	ensembl	54_36p	+1	known	missense	c.1079	p.A360V	1.000	NULL	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
LOC100129113	0	genome.wustl.edu	36	22	16823787	16823787	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	22	16823787	16823787	G	T	SNP	LOC100129113	XM_001726354	human	genbank	54_36p	-1	model	missense	c.9	p.F3L	0.040	NULL	NULL	-	no_errors
ESPNP	0	genome.wustl.edu	36	1	16903192	16903192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	16903192	16903192	G	A	SNP	ESPNP	ENST00000270691	human	ensembl	54_36p	-1	known	missense	c.731	p.S244F	0.988	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_WH2,HMMSmart_SM00246	-	no_start_codon
ADFP	123	genome.wustl.edu	36	9	19106530	19106530	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	19106530	19106530	T	C	SNP	ADFP	NM_001122	human	genbank	54_36p	-1	reviewed	missense	c.1030	p.K344E	0.223	HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors
PLEKHA5	54477	genome.wustl.edu	36	12	19380817	19380817	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	12	19380817	19380817	G	T	SNP	PLEKHA5	NM_019012	human	genbank	54_36p	+1	validated	missense	c.2241	p.Q747H	1.000	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
SLIT2	9353	genome.wustl.edu	36	4	20200402	20200402	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	4	20200402	20200402	G	C	SNP	SLIT2	NM_004787	human	genbank	54_36p	+1	provisional	missense	c.3126	p.Q1042H	0.996	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00365,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00274,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
C20orf74	57186	genome.wustl.edu	36	20	20501599	20501599	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	20	20501599	20501599	C	G	SNP	C20orf74	NM_020343	human	genbank	54_36p	-1	validated	missense	c.2821	p.D941H	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
CIDEB	27141	genome.wustl.edu	36	14	23845501	23845501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	14	23845501	23845501	G	A	SNP	CIDEB	NM_014430	human	genbank	54_36p	-1	validated	silent	c.255	p.D85	0.995	superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266	superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266	-	no_errors
SLC6A4	6532	genome.wustl.edu	36	17	25560368	25560368	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	25560368	25560368	T	C	SNP	SLC6A4	NM_001045	human	genbank	54_36p	-1	reviewed	missense	c.1468	p.K490E	1.000	HMMPfam_SNF	HMMPfam_5HT_transporter,HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SLC6A4	6532	genome.wustl.edu	36	17	25569983	25569983	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	25569983	25569983	C	A	SNP	SLC6A4	NM_001045	human	genbank	54_36p	-1	reviewed	nonsense	c.436	p.G146*	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2,HMMPfam_5HT_transporter	-	no_errors
SCAND3	114821	genome.wustl.edu	36	6	28662140	28662140	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	6	28662140	28662140	C	T	SNP	SCAND3	NM_052923	human	genbank	54_36p	-1	provisional	missense	c.334	p.V112M	1.000	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_RNaseH_fold,HMMPfam_rve,HMMPfam_hATC	-	no_errors
CCDC157	0	genome.wustl.edu	36	22	29096773	29096773	+	Silent	SNP	C	G	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	22	29096773	29096773	C	G	SNP	CCDC157	NM_001017437	human	genbank	54_36p	+1	validated	silent	c.726	p.L242	0.433	NULL	NULL	-	no_errors
ZNF24	7572	genome.wustl.edu	36	18	31174345	31174345	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	18	31174345	31174345	G	C	SNP	ZNF24	NM_006965	human	genbank	54_36p	-1	validated	missense	c.268	p.Q90E	0.996	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MEMO1	51072	genome.wustl.edu	36	2	31996595	31996595	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	31996595	31996595	C	G	SNP	MEMO1	NM_015955	human	genbank	54_36p	-1	validated	missense	c.341	p.W114S	1.000	HMMPfam_Memo	HMMPfam_Memo	-	no_errors
TAF1L	138474	genome.wustl.edu	36	9	32622136	32622136	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	32622136	32622136	G	C	SNP	TAF1L	NM_153809	human	genbank	54_36p	-1	provisional	missense	c.3442	p.L1148V	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
NRP1	8829	genome.wustl.edu	36	10	33599611	33599611	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	10	33599611	33599611	C	A	SNP	NRP1	NM_003873	human	genbank	54_36p	-1	validated	missense	c.428	p.R143I	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1	-	no_errors
RBM12	10137	genome.wustl.edu	36	20	33706622	33706622	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	20	33706622	33706622	C	A	SNP	RBM12	NM_006047	human	genbank	54_36p	-1	reviewed	missense	c.37	p.V13L	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
RXFP3	51289	genome.wustl.edu	36	5	33973795	33973795	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	5	33973795	33973795	A	C	SNP	RXFP3	NM_016568	human	genbank	54_36p	+1	provisional	missense	c.1193	p.K398T	1.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CCL21	6366	genome.wustl.edu	36	9	34699534	34699534	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	34699534	34699534	T	A	SNP	CCL21	NM_002989	human	genbank	54_36p	-1	reviewed	missense	c.334	p.T112S	0.000	NULL	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199	-	no_errors
PVALB	5816	genome.wustl.edu	36	22	35539669	35539669	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	22	35539669	35539669	C	A	SNP	PVALB	NM_002854	human	genbank	54_36p	-1	reviewed	missense	c.271	p.D91Y	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
TRIOBP	11078	genome.wustl.edu	36	22	36485448	36485448	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	22	36485448	36485448	A	C	SNP	TRIOBP	NM_138632	human	genbank	54_36p	+1	reviewed	missense	c.1264	p.T422P	0.068	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
ENSG00000212148	0	genome.wustl.edu	36	10	36767657	36767657	+	RNA	SNP	A	A	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	10	36767657	36767657	A	T	SNP	ENSG00000212148	ENST00000390846	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.973	-	-	-	no_errors
KCNU1	0	genome.wustl.edu	36	8	36887681	36887681	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	8	36887681	36887681	C	A	SNP	KCNU1	NM_001031836	human	genbank	54_36p	+1	validated	missense	c.2407	p.P803T	0.012	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a	-	no_errors
CDC2L5	8621	genome.wustl.edu	36	7	40068972	40068972	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	7	40068972	40068972	A	G	SNP	CDC2L5	NM_003718	human	genbank	54_36p	+1	reviewed	missense	c.2623	p.I875V	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZNF295	49854	genome.wustl.edu	36	21	42284589	42284589	+	Silent	SNP	T	T	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	21	42284589	42284589	T	A	SNP	ZNF295	NM_001098402	human	genbank	54_36p	-1	validated	silent	c.2685	p.T895	0.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF22	7570	genome.wustl.edu	36	10	44819334	44819334	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	10	44819334	44819334	A	C	SNP	ZNF22	NM_006963	human	genbank	54_36p	+1	validated	missense	c.512	p.E171A	0.994	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF182	7569	genome.wustl.edu	36	X	47727327	47727327	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	X	47727327	47727327	C	T	SNP	ZNF182	NM_006962	human	genbank	54_36p	-1	validated	silent	c.255	p.P85	0.001	HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ABCA13	154664	genome.wustl.edu	36	7	48283086	48283086	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	7	48283086	48283086	G	C	SNP	ABCA13	NM_152701	human	genbank	54_36p	+1	reviewed	missense	c.3114	p.K1038N	0.000	NULL	PatternScan_SERPIN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MYO5A	4644	genome.wustl.edu	36	15	50449795	50449795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	15	50449795	50449795	C	T	SNP	MYO5A	NM_000259	human	genbank	54_36p	-1	reviewed	missense	c.2929	p.E977K	1.000	NULL	superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors
KRT7	3855	genome.wustl.edu	36	12	50925559	50925559	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	12	50925559	50925559	C	G	SNP	KRT7	NM_005556	human	genbank	54_36p	+1	reviewed	missense	c.1081	p.L361V	0.997	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
TXNDC12	51060	genome.wustl.edu	36	1	52266874	52266874	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	52266874	52266874	C	G	SNP	TXNDC12	NM_015913	human	genbank	54_36p	-1	provisional	missense	c.175	p.V59L	1.000	superfamily_Thioredoxin-like,PatternScan_THIOREDOXIN_1	superfamily_Thioredoxin-like,PatternScan_THIOREDOXIN_1	-	no_errors
BTF3L4	91408	genome.wustl.edu	36	1	52324974	52324974	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	52324974	52324974	C	A	SNP	BTF3L4	NM_152265	human	genbank	54_36p	+1	validated	missense	c.433	p.L145I	1.000	NULL	HMMPfam_NAC	-	no_errors
CALCOCO1	57658	genome.wustl.edu	36	12	52403700	52403700	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	12	52403700	52403700	C	A	SNP	CALCOCO1	NM_020898	human	genbank	54_36p	-1	validated	nonsense	c.394	p.E132*	1.000	HMMPfam_CALCOCO1	HMMPfam_CALCOCO1	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55241364	55241364	+	Silent	SNP	T	T	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	10	55241364	55241364	T	C	SNP	PCDH15	ENST00000395438	human	ensembl	54_36p	-1	known	silent	c.4395	p.E1465	1.000	NULL	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin	-	no_errors
SLC12A3	6559	genome.wustl.edu	36	16	55477785	55477785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	16	55477785	55477785	G	A	SNP	SLC12A3	NM_000339	human	genbank	54_36p	+1	reviewed	missense	c.1934	p.C645Y	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease_N,HMMPfam_AA_permease	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55649872	55649872	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	4	55649872	55649872	G	A	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	missense	c.3430	p.H1144Y	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LOC400652	400652	genome.wustl.edu	36	18	55968079	55968079	+	RNA	SNP	C	G	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	18	55968079	55968079	C	G	SNP	LOC400652	XR_038859	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DPRX	503834	genome.wustl.edu	36	19	58827192	58827192	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	19	58827192	58827192	T	G	SNP	DPRX	NM_001012728	human	genbank	54_36p	+1	validated	missense	c.20	p.L7R	0.007	superfamily_Homeodomain_like	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LOC100131060	0	genome.wustl.edu	36	1	59137505	59137505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	59137505	59137505	C	T	SNP	LOC100131060	XM_001726501	human	genbank	54_36p	+1	model	missense	c.335	p.T112M	0.001	NULL	PatternScan_EGF_2	-	no_errors
DLG3	1741	genome.wustl.edu	36	X	69636517	69636517	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	X	69636517	69636517	G	A	SNP	DLG3	NM_021120	human	genbank	54_36p	+1	validated	missense	c.2038	p.E680K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,HMMPfam_Guanylate_kin	HMMPfam_MAGUK_N_PEST,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_PDZ_assoc,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	-	no_errors
AIFM2	84883	genome.wustl.edu	36	10	71544879	71544879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	10	71544879	71544879	C	T	SNP	AIFM2	NM_032797	human	genbank	54_36p	-1	reviewed	missense	c.773	p.S258N	0.000	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2	-	no_errors
LOC100129272	0	genome.wustl.edu	36	X	72359930	72359930	+	RNA	SNP	T	T	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	X	72359930	72359930	T	C	SNP	LOC100129272	XR_038735	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
SLC4A4	8671	genome.wustl.edu	36	4	72535881	72535881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	4	72535881	72535881	C	T	SNP	SLC4A4	NM_001098484	human	genbank	54_36p	+1	reviewed	missense	c.1321	p.R441W	1.000	HMMPfam_HCO3_cotransp	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp	-	no_errors
CCDC40	55036	genome.wustl.edu	36	17	75638564	75638564	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	75638564	75638564	A	T	SNP	CCDC40	NM_017950	human	genbank	54_36p	+1	validated	missense	c.1046	p.H349L	0.869	NULL	HMMPfam_BRE1	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77779354	77779354	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	8	77779354	77779354	A	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	+1	validated	missense	c.476	p.K159I	1.000	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LOC642546	0	genome.wustl.edu	36	X	79715262	79715262	+	RNA	SNP	T	T	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	X	79715262	79715262	T	C	SNP	LOC642546	XR_038841	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.597	-	-	-	pseudogene
LOC401533	401533	genome.wustl.edu	36	9	83893375	83893375	+	RNA	SNP	T	T	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	83893375	83893375	T	A	SNP	LOC401533	XR_016904	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
HTR1E	3354	genome.wustl.edu	36	6	87782410	87782410	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	6	87782410	87782410	C	T	SNP	HTR1E	NM_000865	human	genbank	54_36p	+1	validated	silent	c.639	p.Y213	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
WDR51B	282809	genome.wustl.edu	36	12	88389605	88389605	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	12	88389605	88389605	C	G	SNP	WDR51B	NM_172240	human	genbank	54_36p	-1	provisional	missense	c.593	p.G198A	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
IGKC	3514	genome.wustl.edu	36	2	88938186	88938186	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	88938186	88938186	C	T	SNP	IGKC	ENST00000390237	human	ensembl	54_36p	-1	known	silent	c.126	p.R42	0.590	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GFI1	2672	genome.wustl.edu	36	1	92721166	92721166	+	Silent	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	92721166	92721166	C	G	SNP	GFI1	NM_005263	human	genbank	54_36p	-1	reviewed	silent	c.141	p.A47	0.824	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2HC	-	no_errors
PAPOLA	10914	genome.wustl.edu	36	14	96091943	96091943	+	Silent	SNP	C	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	14	96091943	96091943	C	T	SNP	PAPOLA	NM_032632	human	genbank	54_36p	+1	validated	silent	c.1671	p.N557	1.000	NULL	HMMPfam_PAP_central,superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2,superfamily_PAP/OAS1 substrate-binding domain,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain,HMMPfam_PAP_RNA-bind	-	no_errors
GIGYF1	64599	genome.wustl.edu	36	7	100122250	100122250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	7	100122250	100122250	C	T	SNP	GIGYF1	NM_022574	human	genbank	54_36p	-1	validated	missense	c.652	p.G218R	0.978	NULL	superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF	-	no_errors
COL8A1	1295	genome.wustl.edu	36	3	100997561	100997561	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	100997561	100997561	G	A	SNP	COL8A1	NM_001850	human	genbank	54_36p	+1	reviewed	missense	c.2126	p.R709K	0.006	HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
ERP44	23071	genome.wustl.edu	36	9	101854628	101854628	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	101854628	101854628	A	G	SNP	ERP44	NM_015051	human	genbank	54_36p	-1	validated	missense	c.178	p.F60L	1.000	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_ER_TARGET	-	no_errors
GPRASP2	114928	genome.wustl.edu	36	X	101856608	101856608	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	X	101856608	101856608	C	G	SNP	GPRASP2	NM_001004051	human	genbank	54_36p	+1	validated	missense	c.155	p.T52S	0.318	NULL	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
CINP	51550	genome.wustl.edu	36	14	101891947	101891947	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	14	101891947	101891947	A	T	SNP	CINP	NM_032630	human	genbank	54_36p	-1	reviewed	missense	c.217	p.S73T	0.001	NULL	NULL	-	no_errors
MURC	347273	genome.wustl.edu	36	9	102388274	102388274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	102388274	102388274	G	A	SNP	MURC	NM_001018116	human	genbank	54_36p	+1	validated	missense	c.815	p.R272H	0.476	NULL	NULL	-	no_errors
LAMB1	3912	genome.wustl.edu	36	7	107359150	107359150	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	7	107359150	107359150	G	C	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.4424	p.A1475G	1.000	NULL	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_Prefoldin	-	no_errors
ADRA2A	150	genome.wustl.edu	36	10	112828879	112828879	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	10	112828879	112828879	G	T	SNP	ADRA2A	NM_000681	human	genbank	54_36p	+1	reviewed	missense	c.1090	p.G364W	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
IGSF2	9398	genome.wustl.edu	36	1	117353994	117353994	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	117353994	117353994	G	A	SNP	IGSF2	NM_004258	human	genbank	54_36p	+1	validated	splice_site	c.44-1	e2-1	0.858	-	-	-	no_errors
C5	727	genome.wustl.edu	36	9	122783942	122783942	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	122783942	122783942	C	T	SNP	C5	NM_001735	human	genbank	54_36p	-1	reviewed	splice_site	c.3486+1	e27+1	0.993	-	-	-	no_errors
CPXM2	119587	genome.wustl.edu	36	10	125504200	125504200	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	10	125504200	125504200	G	A	SNP	CPXM2	NM_198148	human	genbank	54_36p	-1	validated	silent	c.1986	p.S662	0.632	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	-	no_errors
OPN1SW	611	genome.wustl.edu	36	7	128202753	128202753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	7	128202753	128202753	C	T	SNP	OPN1SW	NM_001708	human	genbank	54_36p	-1	reviewed	missense	c.328	p.E110K	0.997	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-	no_errors
ATP2C1	27032	genome.wustl.edu	36	3	132201087	132201087	+	Silent	SNP	T	T	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	132201087	132201087	T	C	SNP	ATP2C1	NM_001001486	human	genbank	54_36p	+1	reviewed	silent	c.2523	p.N841	1.000	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_C	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
OC90	729330	genome.wustl.edu	36	8	133120253	133120253	+	Silent	SNP	G	G	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	8	133120253	133120253	G	T	SNP	OC90	NM_001080399	human	genbank	54_36p	-1	validated	silent	c.546	p.T182	0.504	superfamily_Phospholipase A2 PLA2	HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2,HMMPfam_Phospholip_A2_1,PatternScan_PA2_HIS,PatternScan_PA2_ASP	-	no_errors
ZFAT	57623	genome.wustl.edu	36	8	135683117	135683117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	8	135683117	135683117	G	A	SNP	ZFAT	NM_020863	human	genbank	54_36p	-1	validated	missense	c.2027	p.S676L	0.005	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
LOC100131316	0	genome.wustl.edu	36	2	136459524	136459524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	136459524	136459524	G	A	SNP	LOC100131316	XM_001717835	human	genbank	54_36p	+1	model	missense	c.409	p.G137S	0.004	NULL	NULL	-	no_errors
LOC139363	0	genome.wustl.edu	36	X	137393476	137393476	+	RNA	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	X	137393476	137393476	C	A	SNP	LOC139363	XR_040400	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
CYP11B2	1585	genome.wustl.edu	36	8	143996099	143996099	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	8	143996099	143996099	G	C	SNP	CYP11B2	NM_000498	human	genbank	54_36p	-1	reviewed	missense	c.160	p.Q54E	0.998	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
ZFP41	286128	genome.wustl.edu	36	8	144403669	144403669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	8	144403669	144403669	G	A	SNP	ZFP41	NM_173832	human	genbank	54_36p	+1	provisional	missense	c.281	p.R94Q	0.906	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
IL9R	3581	genome.wustl.edu	36	X	154893221	154893221	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	X	154893221	154893221	A	G	SNP	IL9R	NM_002186	human	genbank	54_36p	+1	reviewed	missense	c.1519	p.M507V	0.001	NULL	superfamily_FN_III-like,PatternScan_HEMATOPO_REC_S_F1	-	no_errors
LPAL2	80350	genome.wustl.edu	36	6	160841850	160841850	+	Silent	SNP	A	A	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	6	160841850	160841850	A	G	SNP	LPAL2	NM_024492	human	genbank	54_36p	-1	validated	silent	c.162	p.S54	0.000	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1	-	no_errors
DPP4	1803	genome.wustl.edu	36	2	162599995	162599995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	162599995	162599995	G	A	SNP	DPP4	NM_001935	human	genbank	54_36p	-1	reviewed	silent	c.699	p.V233	1.000	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER	-	no_errors
OTOL1	131149	genome.wustl.edu	36	3	162704308	162704308	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	162704308	162704308	C	A	SNP	OTOL1	NM_001080440	human	genbank	54_36p	+1	predicted	missense	c.1318	p.Q440K	1.000	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179137035	179137035	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	179137035	179137035	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.70013	p.T23338K	0.998	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Fibronectin type III	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179292610	179292610	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	179292610	179292610	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	nonsense	c.20122	p.E6708*	0.998	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
OR2Y1	134083	genome.wustl.edu	36	5	180099395	180099395	+	Silent	SNP	G	G	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	5	180099395	180099395	G	C	SNP	OR2Y1	NM_001001657	human	genbank	54_36p	-1	provisional	silent	c.270	p.R90	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DGKG	1608	genome.wustl.edu	36	3	187469291	187469291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	187469291	187469291	C	T	SNP	DGKG	NM_001346	human	genbank	54_36p	-1	reviewed	missense	c.1109	p.R370Q	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
MUC4	4585	genome.wustl.edu	36	3	196986790	196986790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	196986790	196986790	C	T	SNP	MUC4	NM_018406	human	genbank	54_36p	-1	reviewed	missense	c.3220	p.G1074R	0.926	NULL	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	no_errors
TFRC	7037	genome.wustl.edu	36	3	197269883	197269883	+	Silent	SNP	A	A	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	197269883	197269883	A	C	SNP	TFRC	NM_003234	human	genbank	54_36p	-1	validated	silent	c.1554	p.T518	0.004	superfamily_Zn-dependent exopeptidases	superfamily_Zn-dependent exopeptidases,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	-	no_errors
SLC23A3	151295	genome.wustl.edu	36	2	219742573	219742573	+	Silent	SNP	T	T	C	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	219742573	219742573	T	C	SNP	SLC23A3	NM_144712	human	genbank	54_36p	-1	validated	silent	c.234	p.G78	0.235	HMMPfam_Xan_ur_permease	HMMPfam_Xan_ur_permease	-	no_errors
MIA3	375056	genome.wustl.edu	36	1	220869823	220869823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	220869823	220869823	C	T	SNP	MIA3	NM_198551	human	genbank	54_36p	+1	validated	missense	c.2638	p.H880Y	0.001	NULL	superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
DOCK10	55619	genome.wustl.edu	36	2	225347922	225347922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	225347922	225347922	G	A	SNP	DOCK10	NM_014689	human	genbank	54_36p	-1	validated	missense	c.5957	p.S1986L	1.000	HMMPfam_Ded_cyto	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226541200	226541200	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	226541200	226541200	C	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	+1	reviewed	missense	c.9381	p.C3127W	0.907	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
CAB39	51719	genome.wustl.edu	36	2	231391502	231391502	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	2	231391502	231391502	C	T	SNP	CAB39	NM_016289	human	genbank	54_36p	+1	validated	nonsense	c.865	p.Q289*	0.996	HMMPfam_Mo25,superfamily_ARM repeat	HMMPfam_Mo25,superfamily_ARM repeat	-	no_errors
ADSS	159	genome.wustl.edu	36	1	242662485	242662485	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	242662485	242662485	C	G	SNP	ADSS	NM_001126	human	genbank	54_36p	-1	reviewed	missense	c.391	p.D131H	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Adenylsucc_synt,HMMSmart_SM00788	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,PatternScan_ADENYLOSUCCIN_SYN_1,PatternScan_ADENYLOSUCCIN_SYN_2	-	no_errors
OR2B11	127623	genome.wustl.edu	36	1	245681443	245681443	+	Silent	SNP	A	A	G	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	245681443	245681443	A	G	SNP	OR2B11	NM_001004492	human	genbank	54_36p	-1	provisional	silent	c.465	p.S155	0.515	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DSP	1832	genome.wustl.edu	36	6	7504594	7504612	+	Frame_Shift_Del	DEL	GTCACCAGTGAATGTTTGG	GTCACCAGTGAATGTTTGG	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	GTCACCAGTGAATGTTTGG	GTCACCAGTGAATGTTTGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	6	7504594	7504612	GTCACCAGTGAATGTTTGG	-	DEL	DSP	NM_004415	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.559_577	p.V187fs	0.992:0.997:0.997:1.000:1.000:0.998:0.996:0.997:0.996:1.000:0.995:0.836:0.856:0.848:0.653:0.658:0.980:0.990:0.996	superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	(deletion:cds_exon[7504458,7504632])	no_errors
TP53	7157	genome.wustl.edu	36	17	7519209	7519210	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	7519209	7519210	-	A	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.446_445	p.S149fs	0.000:0.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
RAI1	10743	genome.wustl.edu	36	17	17640852	17640859	+	Frame_Shift_Del	DEL	GCCACAAA	GCCACAAA	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	GCCACAAA	GCCACAAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	17640852	17640859	GCCACAAA	-	DEL	RAI1	NM_030665	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.3865_3872	p.T1290fs	0.000:0.001:0.001:0.000:0.000:0.007:0.043:0.053	NULL	HMMSmart_SM00249	(deletion:cds_exon[17636988,17642552])	no_errors
BRCA1	672	genome.wustl.edu	36	17	38497608	38497609	+	Frame_Shift_Ins	INS	-	-	ATCTAACA	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	17	38497608	38497609	-	ATCTAACA	INS	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.3466_3465	p.D1155fs	0.515:0.581	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	-	no_errors
FBXW12	285231	genome.wustl.edu	36	3	48394881	48394912	+	Frame_Shift_Del	DEL	ATCTCGCCATCACTATGGATCGGAAAAAAACT	ATCTCGCCATCACTATGGATCGGAAAAAAACT	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	ATCTCGCCATCACTATGGATCGGAAAAAAACT	ATCTCGCCATCACTATGGATCGGAAAAAAACT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	48394881	48394912	ATCTCGCCATCACTATGGATCGGAAAAAAACT	-	DEL	FBXW12	NM_207102	human	genbank	54_36p	+1	provisional	frame_shift_del	c.476_507	p.L160fs	0.001:0.000:0.000:0.000:0.000:0.003:0.000:0.000:0.000:0.001:0.001:0.003:0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.013:0.034:0.100	superfamily_WD40_like	PatternScan_WD_REPEATS_1,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383,superfamily_WD40_like	(deletion:cds_exon[48394811,48395020])	no_errors
IP6K2	51447	genome.wustl.edu	36	3	48707554	48707568	+	In_Frame_Del	DEL	TCTCAGCAGGGAGGG	TCTCAGCAGGGAGGG	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	TCTCAGCAGGGAGGG	TCTCAGCAGGGAGGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	48707554	48707568	TCTCAGCAGGGAGGG	-	DEL	IP6K2	NM_001005909	human	genbank	54_36p	-1	reviewed	in_frame_del	c.175_161	p.TLPAE54in_frame_del	1.000:1.000:1.000:1.000:0.956:0.978:0.946:0.900:1.000:1.000:1.000:1.000:1.000:0.995:1.000	superfamily_SAICAR synthase-like	superfamily_SAICAR synthase-like,HMMPfam_IPK	(deletion:cds_exon[48707527,48707728])	no_errors
IP6K2	51447	genome.wustl.edu	36	3	48707680	48707680	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	3	48707680	48707680	C	-	DEL	IP6K2	NM_001005909	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.49	p.V17fs	0.998	NULL	HMMPfam_IPK,superfamily_SAICAR synthase-like	(deletion:cds_exon[48707527,48707728])	no_errors
GRIN2D	2906	genome.wustl.edu	36	19	53614639	53614655	+	Splice_Site	DEL	CCTGGCCCCCTGCAGGC	CCTGGCCCCCTGCAGGC	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	CCTGGCCCCCTGCAGGC	CCTGGCCCCCTGCAGGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	19	53614639	53614655	CCTGGCCCCCTGCAGGC	-	DEL	GRIN2D	NM_000836	human	genbank	54_36p	+1	reviewed	splice_site_del	c.1862-15_1862-1	e8-1	0.985:0.991:0.989:0.950:0.509:0.424:0.034:0.033:0.022:0.022:0.025:0.073:0.898:0.999:1.000:0.986:0.968	-	-	(deletion:intron[53614429,53614653], cds_exon[53614654,53614883])	no_errors
NEXN	91624	genome.wustl.edu	36	1	78156500	78156516	+	Frame_Shift_Del	DEL	TAGAAAAGAGGAAAATA	TAGAAAAGAGGAAAATA	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	TAGAAAAGAGGAAAATA	TAGAAAAGAGGAAAATA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	78156500	78156516	TAGAAAAGAGGAAAATA	-	DEL	NEXN	NM_144573	human	genbank	54_36p	+1	validated	frame_shift_del	c.401_417	p.L134fs	0.812:0.838:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.945	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	(deletion:cds_exon[78156398,78156546])	no_errors
NEXN	91624	genome.wustl.edu	36	1	78156518	78156527	+	Frame_Shift_Del	DEL	AGCGTGAATT	AGCGTGAATT	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	AGCGTGAATT	AGCGTGAATT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	1	78156518	78156527	AGCGTGAATT	-	DEL	NEXN	NM_144573	human	genbank	54_36p	+1	validated	frame_shift_del	c.419_428	p.R141fs	1.000:1.000:1.000:0.999:0.960:1.000:1.000:0.999:0.998:1.000	NULL	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	(deletion:cds_exon[78156398,78156546])	no_errors
RAPGEF1	2889	genome.wustl.edu	36	9	133491196	133491216	+	In_Frame_Del	DEL	TAAAATCACCCACAAATTCGA	TAAAATCACCCACAAATTCGA	-	novel	unknown	TCGA-24-1846-01A-01W-0639-09	TCGA-24-1846-10A-01W-0639-09	TAAAATCACCCACAAATTCGA	TAAAATCACCCACAAATTCGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1978f4b1-64bb-414a-a514-5714616b5bde	c983f89b-f83f-459e-9343-d653755672b1	9	133491196	133491216	TAAAATCACCCACAAATTCGA	-	DEL	RAPGEF1	NM_198679	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1639_1619	p.VEFVGDFT540in_frame_delA	0.997:0.998:1.000:1.000:0.998:1.000:1.000:0.995:0.995:0.996:0.997:1.000:1.000:1.000:1.000:1.000:0.982:0.987:0.981:0.156:0.212	NULL	superfamily_Ras_GEF,HMMSmart_RasGEFN,HMMPfam_RasGEF_N,HMMSmart_RasGEF,HMMPfam_RasGEF,PatternScan_RASGEF	(deletion:cds_exon[133491130,133491630])	no_errors
