Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
DOK7	285489	genome.wustl.edu	36	4	3471855	3471855	+	Silent	SNP	C	T	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	4	3471855	3471855	C	T	SNP	DOK7	ENST00000389653	human	ensembl	54_36p	+1	known	silent	c.1620	p.P540	0.988	NULL	superfamily_SSF50729,HMMSmart_PH	-	no_errors
CRMP1	1400	genome.wustl.edu	36	4	5894023	5894023	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	4	5894023	5894023	T	G	SNP	CRMP1	NM_001014809	human	genbank	54_36p	-1	reviewed	missense	c.1066	p.I356L	1.000	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520316	7520316	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	7520316	7520316	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.97-1	e3-1	0.209	-	-	-	no_errors
ATP5C1	509	genome.wustl.edu	36	10	7870186	7870186	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	10	7870186	7870186	C	T	SNP	ATP5C1	NM_001001973	human	genbank	54_36p	+1	reviewed	missense	c.10	p.R4C	0.993	NULL	HMMPfam_ATP-synt,superfamily_ATP synthase (F1-ATPase) gamma subunit,PatternScan_ATPASE_GAMMA	-	no_errors
ALOX15B	247	genome.wustl.edu	36	17	7890716	7890716	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	7890716	7890716	G	A	SNP	ALOX15B	NM_001141	human	genbank	54_36p	+1	reviewed	silent	c.1206	p.L402	0.982	superfamily_Lipoxigenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),superfamily_Lipoxigenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2,PatternScan_IG_MHC	-	no_errors
ANKRD12	23253	genome.wustl.edu	36	18	9246100	9246100	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	18	9246100	9246100	A	T	SNP	ANKRD12	NM_015208	human	genbank	54_36p	+1	validated	missense	c.2835	p.K945N	0.994	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
ATG4D	84971	genome.wustl.edu	36	19	10523596	10523596	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	19	10523596	10523596	C	G	SNP	ATG4D	NM_032885	human	genbank	54_36p	+1	reviewed	missense	c.990	p.C330W	0.999	HMMPfam_Peptidase_C54	HMMPfam_Peptidase_C54	-	no_errors
BRD4	23476	genome.wustl.edu	36	19	15210880	15210880	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	19	15210880	15210880	C	G	SNP	BRD4	NM_058243	human	genbank	54_36p	-1	reviewed	missense	c.3772	p.E1258Q	1.000	NULL	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
SATB1	6304	genome.wustl.edu	36	3	18365876	18365876	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	18365876	18365876	C	T	SNP	SATB1	NM_002971	human	genbank	54_36p	-1	validated	silent	c.2082	p.Q694	1.000	HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
SATB1	6304	genome.wustl.edu	36	3	18365998	18365998	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	18365998	18365998	C	T	SNP	SATB1	NM_002971	human	genbank	54_36p	-1	validated	missense	c.1960	p.E654K	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like	-	no_errors
TAS1R2	80834	genome.wustl.edu	36	1	19039228	19039228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	19039228	19039228	C	T	SNP	TAS1R2	NM_152232	human	genbank	54_36p	-1	validated	missense	c.1972	p.A658T	0.973	HMMPfam_7tm_3	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,superfamily_SSF57586,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_errors
KCNH8	131096	genome.wustl.edu	36	3	19359198	19359198	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	19359198	19359198	G	C	SNP	KCNH8	NM_144633	human	genbank	54_36p	+1	reviewed	missense	c.558	p.L186F	1.000	NULL	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	-	no_errors
IGLV4-60	0	genome.wustl.edu	36	22	20846859	20846859	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	22	20846859	20846859	C	G	SNP	IGLV4-60	ENST00000390284	human	ensembl	54_36p	+1	known	missense	c.147	p.H49Q	0.002	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
SNORD115-21	0	genome.wustl.edu	36	15	23004393	23004393	+	RNA	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	15	23004393	23004393	C	T	SNP	SNORD115-21	NR_003313	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.106	-	-	-	no_errors
GPX6	257202	genome.wustl.edu	36	6	28580093	28580093	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	6	28580093	28580093	G	A	SNP	GPX6	NM_182701	human	genbank	54_36p	-1	reviewed	silent	c.621	p.V207	0.884	superfamily_Thioredoxin-like	superfamily_Thioredoxin-like,HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2	-	pseudogene
TMEM132E	124842	genome.wustl.edu	36	17	29988770	29988770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	29988770	29988770	C	T	SNP	TMEM132E	NM_207313	human	genbank	54_36p	+1	provisional	silent	c.2361	p.F787	0.999	NULL	NULL	-	no_errors
HCK	3055	genome.wustl.edu	36	20	30152901	30152901	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	20	30152901	30152901	A	T	SNP	HCK	NM_002110	human	genbank	54_36p	+1	reviewed	missense	c.1499	p.E500V	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PIGO	84720	genome.wustl.edu	36	9	35082719	35082719	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	9	35082719	35082719	G	A	SNP	PIGO	NM_032634	human	genbank	54_36p	-1	reviewed	nonsense	c.1165	p.Q389*	0.953	NULL	superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest	-	no_errors
HLCS	3141	genome.wustl.edu	36	21	37230993	37230993	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	21	37230993	37230993	C	G	SNP	HLCS	NM_000411	human	genbank	54_36p	-1	validated	missense	c.622	p.D208H	0.793	NULL	superfamily_SSF55681,HMMPfam_BPL_LipA_LipB,HMMPfam_BPL_C	-	no_errors
ADAM18	8749	genome.wustl.edu	36	8	39625029	39625029	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	8	39625029	39625029	T	A	SNP	ADAM18	NM_014237	human	genbank	54_36p	+1	reviewed	missense	c.1056	p.S352R	0.994	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2"	-	no_errors
TGM7	116179	genome.wustl.edu	36	15	41359269	41359269	+	Silent	SNP	C	C	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	15	41359269	41359269	C	A	SNP	TGM7	NM_052955	human	genbank	54_36p	-1	validated	silent	c.1524	p.L508	0.030	superfamily_Transglut_C	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors
TTLL12	23170	genome.wustl.edu	36	22	41900224	41900224	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	22	41900224	41900224	G	A	SNP	TTLL12	NM_015140	human	genbank	54_36p	-1	provisional	silent	c.1164	p.P388	0.968	HMMPfam_TTL	HMMPfam_TTL	-	no_errors
LRRC59	55379	genome.wustl.edu	36	17	45815423	45815423	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	45815423	45815423	G	C	SNP	LRRC59	NM_018509	human	genbank	54_36p	-1	provisional	missense	c.849	p.I283M	1.000	NULL	superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors
LOC220429	220429	genome.wustl.edu	36	13	49362828	49362828	+	RNA	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	13	49362828	49362828	C	T	SNP	LOC220429	NR_003268	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.905	-	-	-	pseudogene
VPRBP	9730	genome.wustl.edu	36	3	51433142	51433142	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	51433142	51433142	G	A	SNP	VPRBP	ENST00000273612	human	ensembl	54_36p	-1	known	silent	c.2334	p.I778	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMSmart_SM00667,HMMPfam_LisH,superfamily_WD40 repeat-like	-	no_errors
ESPL1	9700	genome.wustl.edu	36	12	51962410	51962410	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	12	51962410	51962410	G	A	SNP	ESPL1	NM_012291	human	genbank	54_36p	+1	validated	silent	c.2715	p.L905	1.000	NULL	HMMPfam_Peptidase_C50	-	no_errors
ESPL1	9700	genome.wustl.edu	36	12	51968054	51968054	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	12	51968054	51968054	A	G	SNP	ESPL1	NM_012291	human	genbank	54_36p	+1	validated	missense	c.4208	p.D1403G	0.984	NULL	HMMPfam_Peptidase_C50	-	no_errors
OR4D1	26689	genome.wustl.edu	36	17	53588321	53588321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	53588321	53588321	G	A	SNP	OR4D1	NM_012374	human	genbank	54_36p	+1	provisional	missense	c.808	p.A270T	0.984	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZNF701	55762	genome.wustl.edu	36	19	57778147	57778147	+	Silent	SNP	T	T	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	19	57778147	57778147	T	C	SNP	ZNF701	NM_018260	human	genbank	54_36p	+1	provisional	silent	c.1023	p.L341	0.000	superfamily_Multiheme cytochromes,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,superfamily_Multiheme cytochromes,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DNASE1L3	1776	genome.wustl.edu	36	3	58158644	58158644	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	58158644	58158644	C	T	SNP	DNASE1L3	NM_004944	human	genbank	54_36p	-1	reviewed	silent	c.648	p.L216	1.000	HMMSmart_SM00476,HMMPfam_Exo_endo_phos,superfamily_DNase I-like	HMMSmart_SM00476,HMMPfam_Exo_endo_phos,superfamily_DNase I-like,PatternScan_DNASE_I_1,PatternScan_DNASE_I_2	-	no_errors
MARCH10	162333	genome.wustl.edu	36	17	58190992	58190992	+	Silent	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	58190992	58190992	C	T	SNP	MARCH10	NM_001100875	human	genbank	54_36p	-1	validated	silent	c.318	p.Q106	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00744,HMMPfam_zf-C3HC4	-	no_errors
ERN1	2081	genome.wustl.edu	36	17	59529654	59529654	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	59529654	59529654	G	C	SNP	ERN1	ENST00000225768	human	ensembl	54_36p	-1	known	missense	c.1	p.P1A	0.000	NULL	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_start_codon
TDRD3	81550	genome.wustl.edu	36	13	59939408	59939408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	13	59939408	59939408	C	T	SNP	TDRD3	NM_030794	human	genbank	54_36p	+1	validated	missense	c.110	p.S37L	0.985	NULL	superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMPfam_TUDOR	-	no_errors
SIX4	51804	genome.wustl.edu	36	14	60259850	60259850	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	14	60259850	60259850	C	G	SNP	SIX4	NM_017420	human	genbank	54_36p	-1	validated	missense	c.696	p.E232D	1.000	superfamily_Homeodomain_like,HMMSmart_HOX	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LPHN3	23284	genome.wustl.edu	36	4	62281810	62281810	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	4	62281810	62281810	A	T	SNP	LPHN3	NM_015236	human	genbank	54_36p	+1	reviewed	missense	c.1138	p.N380Y	1.000	HMMPfam_OLF,HMMSmart_OLF	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_OLF,HMMSmart_HormR,HMMPfam_HRM,superfamily_SSF81321,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors
CATSPER1	117144	genome.wustl.edu	36	11	65550129	65550129	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	11	65550129	65550129	G	T	SNP	CATSPER1	NM_053054	human	genbank	54_36p	-1	reviewed	missense	c.298	p.P100T	0.001	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
CYP7B1	9420	genome.wustl.edu	36	8	65679876	65679876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	8	65679876	65679876	C	T	SNP	CYP7B1	NM_004820	human	genbank	54_36p	-1	reviewed	missense	c.1150	p.D384N	0.002	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450	-	no_errors
NETO1	81832	genome.wustl.edu	36	18	68568767	68568767	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	18	68568767	68568767	A	C	SNP	NETO1	NM_138966	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.C351G	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
CTH	1491	genome.wustl.edu	36	1	70672192	70672192	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	70672192	70672192	A	G	SNP	CTH	NM_001902	human	genbank	54_36p	+1	reviewed	missense	c.971	p.H324R	1.000	superfamily_PLP-dependent transferases,HMMPfam_Cys_Met_Meta_PP	superfamily_PLP-dependent transferases,HMMPfam_Cys_Met_Meta_PP,PatternScan_CYS_MET_METAB_PP	-	no_errors
EXOC7	23265	genome.wustl.edu	36	17	71591757	71591757	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	71591757	71591757	T	A	SNP	EXOC7	NM_001013839	human	genbank	54_36p	-1	validated	missense	c.1877	p.D626V	1.000	HMMPfam_Exo70	HMMPfam_Exo70	-	no_errors
DYSF	8291	genome.wustl.edu	36	2	71596354	71596354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	71596354	71596354	C	T	SNP	DYSF	NM_003494	human	genbank	54_36p	+1	reviewed	missense	c.757	p.R253W	0.994	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors
MAMDC2	256691	genome.wustl.edu	36	9	71975236	71975236	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	9	71975236	71975236	G	C	SNP	MAMDC2	NM_153267	human	genbank	54_36p	+1	validated	missense	c.1520	p.G507A	1.000	HMMSmart_SM00137	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1	-	no_errors
XIST	7503	genome.wustl.edu	36	X	72987578	72987578	+	RNA	SNP	G	G	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	X	72987578	72987578	G	T	SNP	XIST	NR_001564	human	genbank	54_36p	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors
C15orf39	56905	genome.wustl.edu	36	15	73286172	73286172	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	15	73286172	73286172	G	C	SNP	C15orf39	NM_015492	human	genbank	54_36p	+1	validated	missense	c.730	p.E244Q	0.043	NULL	NULL	-	no_errors
C15orf39	56905	genome.wustl.edu	36	15	73286756	73286756	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	15	73286756	73286756	G	C	SNP	C15orf39	NM_015492	human	genbank	54_36p	+1	validated	missense	c.1314	p.E438D	0.519	NULL	NULL	-	no_errors
COX18	285521	genome.wustl.edu	36	4	74149454	74149454	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	4	74149454	74149454	T	C	SNP	COX18	NM_173827	human	genbank	54_36p	-1	validated	missense	c.625	p.T209A	0.631	HMMPfam_60KD_IMP	HMMPfam_60KD_IMP	-	no_errors
USP36	57602	genome.wustl.edu	36	17	74328687	74328687	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	74328687	74328687	T	C	SNP	USP36	NM_025090	human	genbank	54_36p	-1	validated	missense	c.809	p.D270G	1.000	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors
CARD14	79092	genome.wustl.edu	36	17	75779195	75779195	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	17	75779195	75779195	C	A	SNP	CARD14	NM_024110	human	genbank	54_36p	+1	reviewed	missense	c.991	p.L331M	0.040	NULL	superfamily_DEATH domain,HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC440015	0	genome.wustl.edu	36	3	75801736	75801736	+	RNA	SNP	C	C	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	75801736	75801736	C	A	SNP	LOC440015	XR_015234	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.311	-	-	-	no_errors
MSH4	4438	genome.wustl.edu	36	1	76060821	76060821	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	76060821	76060821	C	G	SNP	MSH4	NM_002440	human	genbank	54_36p	+1	validated	missense	c.1129	p.Q377E	1.000	HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd	superfamily_DNA_mismatch_repair_MutS_connt,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors
KIAA1024	23251	genome.wustl.edu	36	15	77535716	77535716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	15	77535716	77535716	C	T	SNP	KIAA1024	NM_015206	human	genbank	54_36p	+1	validated	missense	c.172	p.P58S	1.000	NULL	HMMPfam_UPF0258	-	no_errors
LOC441089	441089	genome.wustl.edu	36	5	79682728	79682728	+	RNA	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	5	79682728	79682728	G	A	SNP	LOC441089	NR_003665	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
SEMA4B	10509	genome.wustl.edu	36	15	88564123	88564123	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	15	88564123	88564123	A	C	SNP	SEMA4B	NM_020210	human	genbank	54_36p	+1	validated	missense	c.479	p.Y160S	1.000	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
STEAP1	26872	genome.wustl.edu	36	7	89628092	89628092	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	7	89628092	89628092	C	A	SNP	STEAP1	NM_012449	human	genbank	54_36p	+1	reviewed	missense	c.122	p.P41H	0.490	NULL	HMMPfam_Ferric_reduct	-	no_errors
GPC5	2262	genome.wustl.edu	36	13	91206577	91206577	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	13	91206577	91206577	C	G	SNP	GPC5	NM_004466	human	genbank	54_36p	+1	reviewed	nonsense	c.1182	p.Y394*	0.957	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
BRDT	676	genome.wustl.edu	36	1	92217734	92217734	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	92217734	92217734	T	G	SNP	BRDT	NM_001726	human	genbank	54_36p	+1	validated	missense	c.1119	p.F373L	1.000	superfamily_Bromodomain,HMMSmart_SM00297	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
LOC440311	440311	genome.wustl.edu	36	15	93200445	93200445	+	RNA	SNP	C	C	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	15	93200445	93200445	C	A	SNP	LOC440311	XR_016779	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.749	-	-	-	pseudogene
MTF2	22823	genome.wustl.edu	36	1	93358714	93358714	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	93358714	93358714	G	C	SNP	MTF2	NM_007358	human	genbank	54_36p	+1	validated	missense	c.818	p.C273S	1.000	NULL	HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
BTK	695	genome.wustl.edu	36	X	100504234	100504234	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	X	100504234	100504234	C	G	SNP	BTK	NM_000061	human	genbank	54_36p	-1	reviewed	missense	c.491	p.G164A	1.000	superfamily_SSF50729,HMMSmart_BTK,HMMPfam_BTK	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
VPS13B	157680	genome.wustl.edu	36	8	100860252	100860252	+	Silent	SNP	A	A	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	8	100860252	100860252	A	G	SNP	VPS13B	NM_017890	human	genbank	54_36p	+1	reviewed	silent	c.7671	p.L2557	0.918	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
MAN2A1	4124	genome.wustl.edu	36	5	109148418	109148418	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	5	109148418	109148418	C	T	SNP	MAN2A1	NM_002372	human	genbank	54_36p	+1	reviewed	missense	c.1652	p.S551L	0.090	superfamily_SSF88688,HMMPfam_Alpha-mann_mid	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	-	no_errors
PKHD1L1	93035	genome.wustl.edu	36	8	110541034	110541034	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	8	110541034	110541034	G	C	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	+1	validated	missense	c.7039	p.A2347P	0.944	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
WDR31	114987	genome.wustl.edu	36	9	115122557	115122557	+	Silent	SNP	A	A	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	9	115122557	115122557	A	C	SNP	WDR31	NM_001012361	human	genbank	54_36p	-1	reviewed	silent	c.681	p.P227	0.009	superfamily_WD40 repeat-like	PatternScan_TONB_DEPENDENT_REC_1,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
NOTCH2	4853	genome.wustl.edu	36	1	120413529	120413529	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	120413529	120413529	G	A	SNP	NOTCH2	NM_024408	human	genbank	54_36p	-1	reviewed	silent	c.15	p.R5	0.985	NULL	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_NL,HMMPfam_Notch,superfamily_Notch_region,HMMPfam_NOD,HMMPfam_NODP,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
OR10G9	219870	genome.wustl.edu	36	11	123399064	123399064	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	11	123399064	123399064	G	A	SNP	OR10G9	NM_001001953	human	genbank	54_36p	+1	provisional	silent	c.135	p.L45	0.005	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
DAB2IP	153090	genome.wustl.edu	36	9	123568730	123568730	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	9	123568730	123568730	C	G	SNP	DAB2IP	NM_032552	human	genbank	54_36p	+1	validated	missense	c.1513	p.P505A	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
PTGS1	5742	genome.wustl.edu	36	9	124188623	124188623	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	9	124188623	124188623	G	C	SNP	PTGS1	NM_000962	human	genbank	54_36p	+1	reviewed	missense	c.1087	p.E363Q	0.631	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_EGF/Laminin,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	-	no_errors
GCC1	79571	genome.wustl.edu	36	7	127009794	127009794	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	7	127009794	127009794	G	C	SNP	GCC1	NM_024523	human	genbank	54_36p	-1	reviewed	missense	c.1838	p.S613C	0.519	NULL	HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
LOC653269	653269	genome.wustl.edu	36	2	130974577	130974577	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	130974577	130974577	A	G	SNP	LOC653269	XM_928585	human	genbank	54_36p	-1	model	splice_site	c.917+2	e4+2	0.717	-	-	-	no_errors
PLEKHB2	55041	genome.wustl.edu	36	2	131620738	131620738	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	131620738	131620738	C	G	SNP	PLEKHB2	NM_001100623	human	genbank	54_36p	+1	validated	missense	c.591	p.N197K	0.863	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
ENPP1	5167	genome.wustl.edu	36	6	132212840	132212840	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	6	132212840	132212840	C	T	SNP	ENPP1	NM_006208	human	genbank	54_36p	+1	reviewed	missense	c.175	p.R59C	1.000	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477	-	no_errors
ENSG00000216965	0	genome.wustl.edu	36	X	134142850	134142850	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	X	134142850	134142850	C	A	SNP	ENSG00000216965	ENST00000402156	human	ensembl	54_36p	-1	known	splice_site	c.NULL	NULL	0.033	-	-	-	no_coding_region:pseudogene
SLC4A9	83697	genome.wustl.edu	36	5	139720519	139720519	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	5	139720519	139720519	T	C	SNP	SLC4A9	ENST00000230993	human	ensembl	54_36p	+1	known	missense	c.241	p.S81P	0.000	superfamily_Phoshotransferase/anion transport protein	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp	-	no_errors
PCDHB10	56126	genome.wustl.edu	36	5	140552460	140552460	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	5	140552460	140552460	G	A	SNP	PCDHB10	NM_018930	human	genbank	54_36p	+1	reviewed	missense	c.151	p.D51N	1.000	HMMPfam_Cadherin_2,superfamily_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
CLCN1	1180	genome.wustl.edu	36	7	142739689	142739689	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	7	142739689	142739689	C	G	SNP	CLCN1	NM_000083	human	genbank	54_36p	+1	reviewed	missense	c.1222	p.P408A	1.000	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS	-	no_errors
PLEC1	5339	genome.wustl.edu	36	8	145069771	145069771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	8	145069771	145069771	G	A	SNP	PLEC1	NM_201380	human	genbank	54_36p	-1	reviewed	missense	c.6725	p.A2242V	0.050	NULL	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
WASH6P	0	genome.wustl.edu	36	X	154907954	154907954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	X	154907954	154907954	G	A	SNP	WASH6P	ENST00000359512	human	ensembl	54_36p	+1	known	missense	c.1298	p.R433H	1.000	NULL	NULL	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155754897	155754897	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	155754897	155754897	C	G	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	missense	c.2758	p.E920Q	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157168329	157168329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	7	157168329	157168329	G	A	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	missense	c.1850	p.A617V	0.972	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
LOC100130897	0	genome.wustl.edu	36	2	161992086	161992086	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	161992086	161992086	G	T	SNP	LOC100130897	XM_001715939	human	genbank	54_36p	-1	model	missense	c.7	p.P3T	0.001	NULL	NULL	-	no_errors
HMMR	3161	genome.wustl.edu	36	5	162831007	162831007	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	5	162831007	162831007	G	A	SNP	HMMR	NM_012484	human	genbank	54_36p	+1	reviewed	missense	c.607	p.E203K	0.000	NULL	NULL	-	no_errors
KCNH7	90134	genome.wustl.edu	36	2	163010889	163010889	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	163010889	163010889	T	C	SNP	KCNH7	NM_033272	human	genbank	54_36p	-1	reviewed	missense	c.1439	p.E480G	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
GPR31	2853	genome.wustl.edu	36	6	167490875	167490875	+	Silent	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	6	167490875	167490875	G	A	SNP	GPR31	NM_005299	human	genbank	54_36p	-1	validated	silent	c.435	p.L145	0.010	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ERGIC1	57222	genome.wustl.edu	36	5	172269295	172269295	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	5	172269295	172269295	G	A	SNP	ERGIC1	NM_001031711	human	genbank	54_36p	+1	reviewed	missense	c.175	p.D59N	1.000	NULL	HMMPfam_DUF1692	-	no_errors
AADACL1	57552	genome.wustl.edu	36	3	173911512	173911512	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	173911512	173911512	G	C	SNP	AADACL1	NM_020792	human	genbank	54_36p	-1	provisional	missense	c.53	p.P18R	0.000	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER	-	no_errors
BTNL9	153579	genome.wustl.edu	36	5	180409908	180409908	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	5	180409908	180409908	C	A	SNP	BTNL9	NM_152547	human	genbank	54_36p	+1	validated	missense	c.669	p.S223R	0.008	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
PLCL1	5334	genome.wustl.edu	36	2	198657523	198657523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	198657523	198657523	C	T	SNP	PLCL1	NM_006226	human	genbank	54_36p	+1	provisional	missense	c.743	p.T248I	0.954	superfamily_SSF47473,HMMPfam_efhand_like	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
ENSG00000221452	0	genome.wustl.edu	36	3	199331225	199331225	+	RNA	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	3	199331225	199331225	C	T	SNP	ENSG00000221452	ENST00000408525	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
SGOL2	151246	genome.wustl.edu	36	2	201108064	201108064	+	Silent	SNP	A	A	G	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	201108064	201108064	A	G	SNP	SGOL2	NM_152524	human	genbank	54_36p	+1	provisional	silent	c.234	p.E78	1.000	HMMPfam_Shugoshin_N	HMMPfam_Shugoshin_N	-	no_errors
CR1L	1379	genome.wustl.edu	36	1	205948232	205948232	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	205948232	205948232	G	C	SNP	CR1L	NM_175710	human	genbank	54_36p	+1	validated	splice_site	c.1414+1	e10+1	0.098	-	-	-	no_errors
PCNXL2	80003	genome.wustl.edu	36	1	231188666	231188666	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	231188666	231188666	C	T	SNP	PCNXL2	NM_014801	human	genbank	54_36p	-1	provisional	missense	c.6035	p.R2012Q	0.038	NULL	PatternScan_DNAJ_1,HMMPfam_Pecanex_C	-	no_errors
CHRM3	1131	genome.wustl.edu	36	1	238137938	238137938	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	238137938	238137938	G	C	SNP	CHRM3	NM_000740	human	genbank	54_36p	+1	reviewed	missense	c.564	p.M188I	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C1orf101	257044	genome.wustl.edu	36	1	242707854	242707854	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	242707854	242707854	G	T	SNP	C1orf101	NM_173807	human	genbank	54_36p	+1	validated	missense	c.212	p.C71F	0.015	NULL	NULL	-	no_errors
OTOP1	133060	genome.wustl.edu	36	4	4279175	4279183	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	CCACAGCAG	CCACAGCAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	4	4279175	4279183	CCACAGCAG	-	DEL	OTOP1	NM_177998	human	genbank	54_36p	-1	provisional	in_frame_del	c.318_310	p.LLW104in_frame_del	1.000:1.000:1.000:0.999:1.000:0.996:0.996:1.000:1.000	NULL	HMMPfam_DUF270	(deletion:cds_exon[4279090,4279492])	no_errors
CRYBB1	1414	genome.wustl.edu	36	22	25338019	25338034	+	Splice_Site	DEL	CGCCGCCCAGTACTCA	CGCCGCCCAGTACTCA	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	CGCCGCCCAGTACTCA	CGCCGCCCAGTACTCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	22	25338019	25338034	CGCCGCCCAGTACTCA	-	DEL	CRYBB1	NM_001887	human	genbank	54_36p	-1	reviewed	splice_site_del	c.299+2_299+1	e2+2	0.001:0.000:0.000:0.000:0.000:0.006:0.019:0.001:0.000:0.000:0.001:0.994:1.000:1.000:1.000:1.000	-	-	(deletion:intron[25333986,25338035])	no_errors
C2orf71	388939	genome.wustl.edu	36	2	29141430	29141431	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	29141430	29141431	-	GCT	INS	C2orf71	NM_001029883	human	genbank	54_36p	-1	predicted	in_frame_ins	c.3676_3675	p.1225in_frame_insS	0.882:0.718	NULL	NULL	-	no_errors
DDR1	780	genome.wustl.edu	36	6	30966777	30966777	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	6	30966777	30966777	G	-	DEL	DDR1	NM_013994	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.466	p.M159fs	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	(deletion:cds_exon[30966729,30966876])	no_errors
NUMBL	9253	genome.wustl.edu	36	19	45865733	45865738	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	TGCTGT	TGCTGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	19	45865733	45865738	TGCTGT	-	DEL	NUMBL	NM_004756	human	genbank	54_36p	-1	validated	in_frame_del	c.1310_1305	p.QQ439in_frame_del	0.998:0.997:0.996:0.997:0.997:0.997	NULL	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,HMMPfam_NumbF	(deletion:cds_exon[45865213,45865883])	no_errors
RB1	5925	genome.wustl.edu	36	13	47853459	47853459	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	13	47853459	47853459	C	-	DEL	RB1	NM_000321	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1574	p.F526fs	1.000	HMMPfam_RB_A,superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	(deletion:cds_exon[47853384,47853580])	no_errors
LOC388553	388553	genome.wustl.edu	36	19	50956887	50956888	+	In_Frame_Ins	INS	-	-	TCCAGC	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	19	50956887	50956888	-	TCCAGC	INS	LOC388553	XM_373809	human	genbank	54_36p	+1	model	in_frame_ins	c.1215_1216	p.409in_frame_insSS	0.000:0.001	NULL	HMMPfam_HLH,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
EML3	256364	genome.wustl.edu	36	11	62135374	62135375	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	11	62135374	62135375	-	C	INS	EML3	NM_153265	human	genbank	54_36p	-1	validated	frame_shift_ins	c.213_212	p.L72fs	0.990:0.997	NULL	HMMPfam_HELP,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like	-	no_errors
L1TD1	54596	genome.wustl.edu	36	1	62445192	62445192	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	1	62445192	62445192	T	-	DEL	L1TD1	NM_019079	human	genbank	54_36p	+1	validated	frame_shift_del	c.304	p.Q103fs	0.000	NULL	HMMPfam_Transposase_22	(deletion:cds_exon[62444889,62445896])	no_errors
RAB11FIP5	26056	genome.wustl.edu	36	2	73161732	73161737	+	In_Frame_Del	DEL	TCCTCC	TCCTCC	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	TCCTCC	TCCTCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	73161732	73161737	TCCTCC	-	DEL	RAB11FIP5	ENST00000389508	human	ensembl	54_36p	-1	known	in_frame_del	c.2142_2137	p.GG713in_frame_del	0.207:0.212:0.205:0.113:0.056:0.011	NULL	PatternScan_ENOYL_COA_HYDRATASE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP	(deletion:cds_exon[73160287,73162299])	no_start_codon
ST3GAL5	8869	genome.wustl.edu	36	2	85920913	85920923	+	Frame_Shift_Del	DEL	GTAGTGCAAAG	GTAGTGCAAAG	-	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	GTAGTGCAAAG	GTAGTGCAAAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	85920913	85920923	GTAGTGCAAAG	-	DEL	ST3GAL5	NM_003896	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1122_1112	p.P371fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.889:0.877:0.977	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	(deletion:cds_exon[85920778,85921026])	no_errors
LOC100131733	0	genome.wustl.edu	36	12	107974809	107974810	+	In_Frame_Ins	INS	-	-	CGGCGG	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	12	107974809	107974810	-	CGGCGG	INS	LOC100131733	XM_001722340	human	genbank	54_36p	-1	model	in_frame_ins	c.190_189	p.63in_frame_insPP	0.000:0.000	NULL	NULL	-	no_errors
FAM171B	165215	genome.wustl.edu	36	2	187267274	187267275	+	In_Frame_Ins	INS	-	-	CAGCAG	novel	unknown	TCGA-24-1849-01A-01W-0639-09	TCGA-24-1849-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	022f1926-871a-45ce-b0c6-28f594bbf5a3	0d9fd243-5634-4c0f-a707-4a482cb031c8	2	187267274	187267275	-	CAGCAG	INS	FAM171B	NM_177454	human	genbank	54_36p	+1	validated	in_frame_ins	c.129_130	p.47in_frame_insQQ	0.996:0.998	NULL	HMMPfam_UPF0560	-	no_errors
