Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
DENND4B	9909	genome.wustl.edu	36	1	152170166	152170167	+	Splice_Site	INS	-	-	G		Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	152170166	152170167	-	G	INS	DENND4B	NM_014856	human	genbank	54_36p	-1	validated	splice_site_ins	c.NULL	e24-2	0.995:0.981	-	-	-	no_errors
IGSF9	57549	genome.wustl.edu	36	1	158179380	158179380	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	158179380	158179380	C	T	SNP	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	missense	c.244	p.V82M	0.99	NULL	-	-	no_errors
KCNJ10	3766	genome.wustl.edu	36	1	158277963	158277963	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	158277963	158277963	G	T	SNP	KCNJ10	NM_002241	human	genbank	54_36p	-1	reviewed	missense	c.984	p.S328R	1	HMMPfam_IRK	HMMPfam_IRK;superfamily_E set domains;superfamily_Voltage-gated potassium channels	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32053079	32053079	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	32053079	32053079	G	T	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.443	p.A148D		NULL	-	-	no_errors
ZMYM6	9204	genome.wustl.edu	36	1	35226961	35226961	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	35226961	35226961	A	C	SNP	ZMYM6	NM_007167	human	genbank	54_36p	-1	validated	missense	c.2309	p.I770S	1	NULL	-	-	no_errors
YBX1	4904	genome.wustl.edu	36	1	42935444	42935444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	42935444	42935444	G	C	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	missense	c.664	p.D222H	1	NULL	HMMPfam_CSD;superfamily_Nucleic acid-binding proteins	-	no_errors
RAD54L	8438	genome.wustl.edu	36	1	46516416	46516416	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	46516416	46516416	A	G	SNP	RAD54L	NM_003579	human	genbank	54_36p	1	reviewed	missense	c.2119	p.N707D	1	NULL	HMMPfam_SNF2_N;HMMPfam_Helicase_C;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CYP4X1	260293	genome.wustl.edu	36	1	47274354	47274354	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	47274354	47274354	C	G	SNP	CYP4X1	NM_178033	human	genbank	54_36p	1	reviewed	missense	c.699	p.H233Q	1	HMMPfam_p450	HMMPfam_p450;superfamily_Cytochrome P450	-	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86106812	86106812	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	1	86106812	86106812	C	T	SNP	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	missense	c.3278	p.R1093K	0.92	NULL	-	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	106972958	106972958	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	10	106972958	106972958	G	T	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	silent	c.2829	p.G943	0.99	NULL	HMMPfam_PKD;superfamily_PKD domain;HMMPfam_BNR;superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase	-	no_errors
OR8K3	219473	genome.wustl.edu	36	11	55842832	55842832	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	11	55842832	55842832	A	T	SNP	OR8K3	NM_001005202	human	genbank	54_36p	1	provisional	silent	c.474	p.L158		NULL	-	-	no_errors
SMTNL1	219537	genome.wustl.edu	36	11	57067040	57067040	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	11	57067040	57067040	G	T	SNP	SMTNL1	NM_001105565	human	genbank	54_36p	1	provisional	nonsense	c.403	p.E135*	0.12	NULL	-	-	no_errors
DLG2	1740	genome.wustl.edu	36	11	82858038	82858038	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	11	82858038	82858038	C	T	SNP	DLG2	NM_001364	human	genbank	54_36p	-1	reviewed	missense	c.2158	p.E720K	1	HMMPfam_Guanylate_kin	HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_Guanylate_kin;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZCCHC8	55596	genome.wustl.edu	36	12	121532444	121532444	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	12	121532444	121532444	C	G	SNP	ZCCHC8	NM_017612	human	genbank	54_36p	-1	validated	splice_site	c.875+1	e9+1	1	-	-	-	no_errors
LDHB	3945	genome.wustl.edu	36	12	21688176	21688176	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	12	21688176	21688176	C	G	SNP	LDHB	NM_002300	human	genbank	54_36p	-1	validated	missense	c.381	p.K127N	1	HMMPfam_Ldh_1_N	HMMPfam_Ldh_1_N;HMMPfam_Ldh_1_C;superfamily_LDH C-terminal domain-like;superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
TRPC4	7223	genome.wustl.edu	36	13	37123513	37123513	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	13	37123513	37123513	G	C	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	silent	c.1968	p.P656	0.99	NULL	-	-	no_errors
LOC647288	647288	genome.wustl.edu	36	13	74712540	74712540	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	13	74712540	74712540	C	A	SNP	LOC647288	XR_017516	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.004	-	-	-	pseudogene
LOC388076	388076	genome.wustl.edu	36	15	19941836	19941836	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	15	19941836	19941836	C	G	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	missense	c.375	p.K125N	1	NULL	-	-	pseudogene
NTRK3	4916	genome.wustl.edu	36	15	86221209	86221209	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	15	86221209	86221209	C	A	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	missense	c.2481	p.L827F	1	NULL	LRRNT;HMMPfam_LRRNT;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;LRR_1;HMMPfam_LRR_1;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);I-set;HMMPfam_I-set;ig;HMMPfam_ig;Immunoglobulin;superfamily_Immunoglobulin;L domain-like;superfamily_L domain-like	-	no_errors
uc002ddh.1	0	genome.wustl.edu	36	16	15115830	15115830	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	16	15115830	15115830	C	T	SNP	uc002ddh.1	ENST00000340301	human	ensembl	54_36p	-1	known	missense	c.1954	p.A652T		NULL	HMMPfam_GPS;HMMPfam_PLAT;HMMPfam_NPIP;superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)	-	no_start_codon
ACSM2B	348158	genome.wustl.edu	36	16	20461777	20461777	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	16	20461777	20461777	T	G	SNP	ACSM2B	NM_001105069	human	genbank	54_36p	-1	validated	missense	c.1469	p.E490A	0.98	NULL	-	-	no_errors
ZNF624	57547	genome.wustl.edu	36	17	16466375	16466375	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	17	16466375	16466375	G	A	SNP	ZNF624	NM_020787	human	genbank	54_36p	-1	validated	silent	c.2550	p.S850	0.01	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
ENSG00000196285	0	genome.wustl.edu	36	2	175292945	175292945	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	2	175292945	175292945	G	A	SNP	ENSG00000196285	ENST00000375183	human	ensembl	54_36p	1	known	missense	c.64	p.A22T	1	NULL	-	-	no_errors
MEX3C	51320	genome.wustl.edu	36	18	46957664	46957664	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	18	46957664	46957664	T	G	SNP	MEX3C	NM_016626	human	genbank	54_36p	-1	validated	missense	c.1035	p.K345N	1	NULL	-	-	no_errors
MAN2B1	4125	genome.wustl.edu	36	19	12636790	12636790	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	19	12636790	12636790	T	A	SNP	MAN2B1	NM_000528	human	genbank	54_36p	-1	reviewed	missense	c.446	p.E149V	1	HMMPfam_Glyco_hydro_38	HMMPfam_Glyco_hydro_38;superfamily_Galactose mutarotase-like;superfamily_Glycoside hydrolase/deacetylase;HMMPfam_Glyco_hydro_38C;HMMPfam_Alpha-mann_mid;superfamily_Families 57/38 glycoside transferase middle domain	-	no_errors
OR7C1	26664	genome.wustl.edu	36	19	14771239	14771239	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	19	14771239	14771239	G	A	SNP	OR7C1	NM_198944	human	genbank	54_36p	-1	validated	missense	c.710	p.A237V	1	HMMPfam_7tm_1	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
JAK3	3718	genome.wustl.edu	36	19	17798626	17798626	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	19	17798626	17798626	C	T	SNP	JAK3	NM_000215	human	genbank	54_36p	-1	reviewed	missense	c.3301	p.G1101R	0.02	NULL	Pkinase_Tyr;HMMPfam_Pkinase_Tyr	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	140930574	140930574	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	2	140930574	140930574	T	A	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.9883	p.T3295S	0.03	HMMPfam_EGF	HMMPfam_Ldl_recept_a;HMMPfam_EGF;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_YWTD domain;HMMPfam_Ldl_recept_b;HMMPfam_NHL;superfamily_LDL receptor-like module	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	141175790	141175790	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	2	141175790	141175790	C	G	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.6397	p.V2133L	0.99	NULL	HMMPfam_Ldl_recept_a;HMMPfam_EGF;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_YWTD domain;HMMPfam_Ldl_recept_b;HMMPfam_NHL;superfamily_LDL receptor-like module	-	no_errors
HAT1	8520	genome.wustl.edu	36	2	172552464	172552464	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	2	172552464	172552464	C	T	SNP	HAT1	NM_003642	human	genbank	54_36p	1	reviewed	missense	c.1034	p.A345V	1	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
CDK5R2	8941	genome.wustl.edu	36	2	219533673	219533673	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	2	219533673	219533673	G	T	SNP	CDK5R2	NM_003936	human	genbank	54_36p	1	reviewed	missense	c.887	p.R296L	1	HMMPfam_CDK5_activator	HMMPfam_CDK5_activator;superfamily_Cyclin-like	-	no_errors
PSMD1	5707	genome.wustl.edu	36	2	231734360	231734360	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	2	231734360	231734360	G	T	SNP	PSMD1	NM_002807	human	genbank	54_36p	1	reviewed	missense	c.2281	p.V761F	1	NULL	-	-	no_errors
C21orf7	56911	genome.wustl.edu	36	21	29468986	29468986	+	Frame_Shift_Del	DEL	A	A	-		Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	21	29468986	29468986	A	-	DEL	C21orf7	NM_020152	human	genbank	54_36p	1	provisional	frame_shift_del	c.631	p.T211fs	0.902	NULL	-	(deletion:cds_exon[29468904,29469084])	no_errors
TXNRD2	10587	genome.wustl.edu	36	22	18282798	18282798	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	22	18282798	18282798	A	T	SNP	TXNRD2	ENST00000400516	human	ensembl	54_36p	-1	known	missense	c.530	p.I177N	0.74	NULL	-	-	no_errors
GPR128	84873	genome.wustl.edu	36	3	101856536	101856536	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	3	101856536	101856536	C	A	SNP	GPR128	NM_032787	human	genbank	54_36p	1	provisional	missense	c.1547	p.T516K		NULL	-	-	no_errors
IRAK2	3656	genome.wustl.edu	36	3	10229964	10229964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	3	10229964	10229964	C	T	SNP	IRAK2	NM_001570	human	genbank	54_36p	1	reviewed	missense	c.602	p.A201V	0	NULL	Death;HMMPfam_Death;Pkinase;HMMPfam_Pkinase	-	no_errors
ACAD9	28976	genome.wustl.edu	36	3	130107783	130107794	+	Splice_Site	DEL	GTGAGTGGCCCC	GTGAGTGGCCCC	-		Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	GTGAGTGGCCCC	GTGAGTGGCCCC	GTGAGTGGCCCC	-	GTGAGTGGCCCC	GTGAGTGGCCCC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	3	130107783	130107794	GTGAGTGGCCCC	-	DEL	ACAD9	NM_014049	human	genbank	54_36p	1	validated	splice_site_del	c.NULL	e12+1	1.000:1.000:0.997:0.997:0.990:0.661:0.074:0.001:0.002:0.006:0.000:0.000	-	-	(deletion:intron[130107783,130109717])	no_errors
ZBBX	79740	genome.wustl.edu	36	3	168498896	168498896	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	3	168498896	168498896	T	C	SNP	ZBBX	NM_024687	human	genbank	54_36p	-1	validated	silent	c.1770	p.Q590	0.69	NULL	-	-	no_errors
MAP3K13	9175	genome.wustl.edu	36	3	186648368	186648368	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	3	186648368	186648368	G	T	SNP	MAP3K13	NM_004721	human	genbank	54_36p	1	reviewed	missense	c.949	p.V317F	1	HMMPfam_Pkinase	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
PDLIM3	27295	genome.wustl.edu	36	4	186664680	186664680	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	4	186664680	186664680	G	A	SNP	PDLIM3	NM_014476	human	genbank	54_36p	-1	reviewed	silent	c.783	p.D261	0.99	NULL	-	-	no_errors
TAS2R1	50834	genome.wustl.edu	36	5	9682483	9682483	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	5	9682483	9682483	C	A	SNP	TAS2R1	NM_019599	human	genbank	54_36p	-1	reviewed	missense	c.662	p.G221V		NULL	-	-	no_errors
ENSG00000181943	0	genome.wustl.edu	36	11	55015968	55015968	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	11	55015968	55015968	G	T	SNP	ENSG00000181943	ENST00000314657	human	ensembl	54_36p	1	known	missense	c.674	p.C225F	1	NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5AK3P	81228	genome.wustl.edu	36	11	56495547	56495547	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	11	56495547	56495547	T	C	SNP	OR5AK3P	ENST00000326876	human	ensembl	54_36p	1	known	silent	c.447	p.Y149		NULL	-	-	no_errors
C6orf105	84830	genome.wustl.edu	36	6	11831642	11831643	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	GC	GC	GC	AT	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	6	11831642	11831643	GC	AT	DNP	C6orf105	NM_032744	human	genbank	54_36p	-1	validated	missense	c.584_583	p.A195I	0.018:0.002	NULL	-	-	no_errors
PHF3	23469	genome.wustl.edu	36	6	64447911	64447911	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	6	64447911	64447911	A	G	SNP	PHF3	NM_015153	human	genbank	54_36p	1	provisional	missense	c.296	p.N99S	1	NULL	-	-	no_errors
LOC100129293	100129293	genome.wustl.edu	36	7	63668086	63668086	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	7	63668086	63668086	G	T	SNP	LOC100129293	XR_038218	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
AASS	10157	genome.wustl.edu	36	7	121545713	121545713	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	7	121545713	121545713	T	G	SNP	AASS	NM_005763	human	genbank	54_36p	-1	reviewed	missense	c.571	p.S191R	1	NULL	HMMPfam_Saccharop_dh;HMMPfam_AlaDh_PNT_C;HMMPfam_AlaDh_PNT_N;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Formate/glycerate dehydrogenase catalytic domain-like;superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47853061	47853061	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	7	47853061	47853061	C	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	silent	c.5094	p.E1698	0.62	NULL	-	-	no_errors
SEMA3D	223117	genome.wustl.edu	36	7	84482414	84482414	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	7	84482414	84482414	A	G	SNP	SEMA3D	NM_152754	human	genbank	54_36p	-1	validated	missense	c.1600	p.C534R	1	HMMPfam_PSI	HMMPfam_Sema;superfamily_Sema domain;HMMPfam_PSI;HMMPfam_V-set;superfamily_Plexin repeat;superfamily_Immunoglobulin	-	no_errors
TRPS1	7227	genome.wustl.edu	36	8	116495950	116495950	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	8	116495950	116495950	G	C	SNP	TRPS1	NM_014112	human	genbank	54_36p	-1	reviewed	missense	c.3362	p.A1121G	1	NULL	HMMPfam_GATA;superfamily_C2H2 and C2HC zinc fingers;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LOC649352	649352	genome.wustl.edu	36	8	12281548	12281548	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	8	12281548	12281548	C	G	SNP	LOC649352	XR_042361	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KCNQ3	3786	genome.wustl.edu	36	8	133265706	133265706	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	8	133265706	133265706	G	A	SNP	KCNQ3	NM_004519	human	genbank	54_36p	-1	reviewed	nonsense	c.568	p.R190*	0.97	HMMPfam_Ion_trans	HMMPfam_Ion_trans;HMMPfam_KCNQ_channel;superfamily_Voltage-gated potassium channels	-	no_errors
CHD7	55636	genome.wustl.edu	36	8	61913209	61913209	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	8	61913209	61913209	A	G	SNP	CHD7	NM_017780	human	genbank	54_36p	1	reviewed	silent	c.4374	p.K1458	1	NULL	HMMPfam_SNF2_N;HMMPfam_Chromo;HMMPfam_Helicase_C;HMMPfam_TCH;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Chromo domain-like	-	no_errors
RABEPK	10244	genome.wustl.edu	36	9	127035868	127035868	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	9	127035868	127035868	T	C	SNP	RABEPK	NM_005833	human	genbank	54_36p	1	provisional	missense	c.907	p.W303R	1	NULL	-	-	no_errors
VAV2	7410	genome.wustl.edu	36	9	135646788	135646788	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	9	135646788	135646788	C	A	SNP	VAV2	NM_003371	human	genbank	54_36p	-1	reviewed	missense	c.1111	p.V371F	1	NULL	HMMPfam_RhoGEF;HMMPfam_SH2;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_CH;HMMPfam_PH;HMMPfam_C1_1;HMMPfam_SH3_2;superfamily_Calponin-homology domain CH-domain;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like;superfamily_SH2 domain;superfamily_Cysteine-rich domain	-	no_errors
ENSG00000162685	0	genome.wustl.edu	36	2	91207257	91207257	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	2	91207257	91207257	T	G	SNP	ENSG00000162685	ENST00000294715	human	ensembl	54_36p	-1	known	splice_site	c.1-2	e1-2	0	-	-	-	no_start_codon:no_stop_codon
IRS4	8471	genome.wustl.edu	36	X	107863319	107863319	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	X	107863319	107863319	G	A	SNP	IRS4	NM_003604	human	genbank	54_36p	-1	reviewed	missense	c.2912	p.P971L	0.06	NULL	HMMPfam_PH;HMMPfam_IRS;superfamily_PH domain-like	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123613594	123613594	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	52f45b5e-af86-454c-be63-a56c6c21b730	77383f45-bd83-4d11-86e5-c4ce8a0ae73b	X	123613594	123613594	T	C	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.1430	p.D477G	0.85	NULL	HMMPfam_NHL;HMMPfam_EGF;HMMPfam_RHS_repeat;superfamily_Carboxypeptidase regulatory domain;HMMPfam_Ten_N;superfamily_Nitrous oxide reductase N-terminal domain;HMMPfam_EGF_2;superfamily_NHL repeat;superfamily_EGF/Laminin	-	no_errors
