Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MMP21	118856	genome.wustl.edu	36	10	127445243	127445243	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	10	127445243	127445243	T	C	SNP	MMP21	NM_147191	human	genbank	54_36p	-1	reviewed	missense	c.1688	p.H563R	0.99	NULL	"HMMPfam_Hemopexin;superfamily_Hemopexin-like domain;HMMPfam_Peptidase_M10;HMMPfam_PG_binding_1;superfamily_PGBD-like;superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
IGHG2	3501	genome.wustl.edu	36	14	105180646	105180646	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	14	105180646	105180646	A	G	SNP	IGHG2	ENST00000390545	human	ensembl	54_36p	-1	known	missense	c.919	p.C307R		NULL	-	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KCNJ11	3767	genome.wustl.edu	36	11	17365114	17365121	+	Frame_Shift_Del	DEL	GGGCCCGC	GGGCCCGC	-	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	GGGCCCGC	GGGCCCGC	GGGCCCGC	-	GGGCCCGC	GGGCCCGC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	11	17365114	17365121	GGGCCCGC	-	DEL	KCNJ11	NM_000525	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1101_1094	p.R365fs	0.057:0.060:0.050:0.001:0.001:0.001:0.000:0.001	NULL	-	(deletion:cds_exon[17365042;17366214])	no_errors
GPR44	11251	genome.wustl.edu	36	11	60377379	60377379	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	11	60377379	60377379	C	A	SNP	GPR44	NM_004778	human	genbank	54_36p	-1	validated	silent	c.393	p.L131	1	HMMPfam_7tm_1	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
KRAS	3845	genome.wustl.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	12	25289551	25289551	C	A	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12V	1	HMMPfam_Ras	superfamily_P-loop containing nucleoside triphosphate hydrolases;Ras;HMMPfam_Ras	-	no_errors
KBTBD7	84078	genome.wustl.edu	36	13	40665783	40665783	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	13	40665783	40665783	C	A	SNP	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	missense	c.611	p.S204I	0.97	NULL	-	-	no_errors
OR4L1	122742	genome.wustl.edu	36	14	19598093	19598093	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	14	19598093	19598093	T	C	SNP	OR4L1	NM_001004717	human	genbank	54_36p	1	provisional	missense	c.50	p.F17S	0.23	NULL	-	-	no_errors
ABCB11	8647	genome.wustl.edu	36	2	169500012	169500012	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	2	169500012	169500012	G	A	SNP	ABCB11	NM_003742	human	genbank	54_36p	-1	reviewed	missense	c.2984	p.A995V	1	HMMPfam_ABC_membrane	HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	-	no_errors
DLGAP4	22839	genome.wustl.edu	36	20	34561482	34561482	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	20	34561482	34561482	G	A	SNP	DLGAP4	NM_183006	human	genbank	54_36p	1	reviewed	silent	c.471	p.E157	1	NULL	-	-	no_errors
RTDR1	27156	genome.wustl.edu	36	22	21731715	21731715	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	22	21731715	21731715	G	A	SNP	RTDR1	NM_014433	human	genbank	54_36p	-1	reviewed	silent	c.972	p.Y324		NULL	HMMPfam_Arm;superfamily_ARM repeat	-	no_errors
SLC6A11	6538	genome.wustl.edu	36	3	10891711	10891711	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	3	10891711	10891711	G	A	SNP	SLC6A11	NM_014229	human	genbank	54_36p	1	provisional	silent	c.822	p.T274	0.82	HMMPfam_SNF	HMMPfam_SNF;superfamily_S-adenosylmethionine decarboxylase	-	no_errors
FBXW7	55294	genome.wustl.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	4	153466739	153466739	G	A	SNP	FBXW7	NM_033632	human	genbank	54_36p	-1	reviewed	missense	c.1513	p.R505C	1	HMMPfam_WD40	WD40;HMMPfam_WD40;F-box;HMMPfam_F-box	-	no_errors
ERGIC1	57222	genome.wustl.edu	36	5	172256654	172256654	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	5	172256654	172256654	G	A	SNP	ERGIC1	NM_001031711	human	genbank	54_36p	1	reviewed	silent	c.126	p.S42	1	NULL	-	-	no_errors
CDH10	1008	genome.wustl.edu	36	5	24573255	24573255	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	5	24573255	24573255	A	G	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	missense	c.517	p.S173P	1	HMMPfam_Cadherin	HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
TRIM39	56658	genome.wustl.edu	36	6	30416065	30416065	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	6	30416065	30416065	A	G	SNP	TRIM39	NM_021253	human	genbank	54_36p	1	reviewed	missense	c.841	p.I281V		NULL	-	-	no_errors
C2	717	genome.wustl.edu	36	6	32004487	32004487	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	6	32004487	32004487	G	A	SNP	C2	NM_000063	human	genbank	54_36p	1	reviewed	splice_site	c.257-1	e3-1	0.56	-	-	-	no_errors
DST	667	genome.wustl.edu	36	6	56589822	56589822	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	6	56589822	56589822	C	T	SNP	DST	NM_001723	human	genbank	54_36p	-1	reviewed	silent	c.6402	p.T2134	0.74	NULL	-	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157054389	157054389	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	7	157054389	157054389	G	A	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	silent	c.2868	p.V956	1	HMMPfam_Y_phosphatase	HMMPfam_Y_phosphatase;superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ADCYAP1R1	117	genome.wustl.edu	36	7	31090934	31090934	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	7	31090934	31090934	G	-	DEL	ADCYAP1R1	NM_001118	human	genbank	54_36p	1	reviewed	frame_shift_del	c.496	p.V166fs	1	HMMPfam_7tm_2	HMMPfam_7tm_2;HMMPfam_HRM;superfamily_Hormone receptor domain (HRM Pfam 02793);superfamily_Family A G protein-coupled receptor-like	(deletion:cds_exon[31090877;31090974])	no_errors
CDH17	1015	genome.wustl.edu	36	8	95258002	95258002	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	8	95258002	95258002	G	A	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	nonsense	c.367	p.R123*	0.27	NULL	HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
SLC39A6	25800	genome.wustl.edu	36	18	31956136	31956137	+	Frame_Shift_Del	DEL	TA	TA	-	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	TA	TA	TA	-	TA	TA	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	d75a0b16-04e4-4ba3-a695-132c5ace698b	491a7bb5-af4a-4503-a09d-6e7bb09f137c	18	31956136	31956137	TA	-	DEL	SLC39A6	NM_012319	human	genbank	54_36p	-1	validated	frame_shift_del	c.1236_1235	p.I412fs	0.981:0.972	HMMPfam_Zip	HMMPfam_Zip	(deletion:cds_exon[31956013;31956231])	no_errors
