Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
COL6A3	1293	hgsc.bcm.edu	36	2	237914353	237914353	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_III	WXS	none			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
FRG1	2483	hgsc.bcm.edu	36	4	191099194	191099194	+	Silent	SNP	C	C	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_III	WXS	none			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
OTOF	9381	hgsc.bcm.edu	36	2	26537068	26537068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_III	WXS	none			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
PCOLCE	5118	hgsc.bcm.edu	36	7	100043349	100043350	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_III	WXS	none			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
SLIT3	6586	hgsc.bcm.edu	36	5	168043640	168043640	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_III	WXS	none			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
SRRM2	23524	hgsc.bcm.edu	36	16	2753121	2753121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_III	WXS	none			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
TP53	7157	hgsc.bcm.edu	36	17	7518928	7518928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_III	WXS	none			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
ANG	283	hgsc.bcm.edu	36	14	20231685	20231685	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
C3orf59	151963	hgsc.bcm.edu	36	3	193999858	193999858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
CES7	221223	hgsc.bcm.edu	36	16	54452929	54452929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
HEXA	3073	hgsc.bcm.edu	36	15	70427491	70427491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
KCTD14	65987	hgsc.bcm.edu	36	11	77405438	77405438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
MPI	4351	hgsc.bcm.edu	36	15	72975547	72975547	+	Silent	SNP	G	G	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
NAE1	8883	hgsc.bcm.edu	36	16	65400416	65400416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
OR2W1	26692	hgsc.bcm.edu	36	6	29120145	29120145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
RENBP	5973	hgsc.bcm.edu	36	X	152858822	152858822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	WXS	454_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
ADAMTS4	9507	hgsc.bcm.edu	36	1	159427713	159427713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
AMPD2	271	hgsc.bcm.edu	36	1	109970328	109970328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
BRCA1	672	hgsc.bcm.edu	36	17	38509760	38509760	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
C10orf137	26098	hgsc.bcm.edu	36	10	127424275	127424275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
C6orf142	90523	hgsc.bcm.edu	36	6	54174992	54174992	+	Splice_Site	SNP	T	T	C	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
COL9A1	1297	hgsc.bcm.edu	36	6	71060652	71060652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
FBN3	84467	hgsc.bcm.edu	36	19	8106925	8106925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
ILVBL	10994	hgsc.bcm.edu	36	19	15089699	15089699	+	Silent	SNP	A	A	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
IPO5	3843	hgsc.bcm.edu	36	13	97450847	97450847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
KCNJ1	3758	hgsc.bcm.edu	36	11	128214571	128214571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
KIT	3815	hgsc.bcm.edu	36	4	55288401	55288401	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
NFKB1	4790	hgsc.bcm.edu	36	4	103724953	103724953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
OTOF	9381	hgsc.bcm.edu	36	2	26537253	26537253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
PREX2	80243	hgsc.bcm.edu	36	8	69168445	69168445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
SAMD9L	219285	hgsc.bcm.edu	36	7	92601456	92601456	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
SLC4A7	9497	hgsc.bcm.edu	36	3	27473170	27473170	+	Silent	SNP	T	T	C	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
TMPRSS11B	132724	hgsc.bcm.edu	36	4	68779575	68779575	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
CADPS	8618	hgsc.bcm.edu	36	3	62453050	62453050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
WIPI2	26100	hgsc.bcm.edu	36	7	5235840	5235840	+	Silent	SNP	A	A	G	rs34104542	byFrequency	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	WXS	Sanger_PCR_WGA			SOLID	728c9111-63da-42cd-9421-28e3fed93669	8665d978-1853-4436-83d7-d686f11c2670
