Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND1	4535	genome.wustl.edu	36	MT	3746	3746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	MT	3746	3746	G	A	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	missense	c.439	p.A147T	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors
MT-CYB	4519	genome.wustl.edu	36	MT	14961	14961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	MT	14961	14961	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.214	p.D72N	NULL	superfamily_Transmembr_di-haem_cytochrome,HMMPfam_Cytochrom_B_N	superfamily_Transmembr_di-haem_cytochrome,HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	-	no_stop_codon:bad_bp_length_for_coding_region
KRTAP5-5	439915	genome.wustl.edu	36	11	1607987	1607987	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	11	1607987	1607987	G	T	SNP	KRTAP5-5	NM_001001480	human	genbank	54_36p	+1	validated	missense	c.341	p.G114V	0.325	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_2FE2S_FER_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	17	7517830	7517830	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.833	p.P278L	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
LOC126075	126075	genome.wustl.edu	36	19	11323734	11323734	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	19	11323734	11323734	A	C	SNP	LOC126075	NM_001080503	human	genbank	54_36p	+1	validated	missense	c.723	p.Q241H	0.002	NULL	NULL	-	no_errors
GAB4	128954	genome.wustl.edu	36	22	15830977	15830977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	22	15830977	15830977	C	T	SNP	GAB4	NM_001037814	human	genbank	54_36p	-1	provisional	missense	c.793	p.G265S	0.913	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
PTPN5	84867	genome.wustl.edu	36	11	18721479	18721479	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	11	18721479	18721479	G	C	SNP	PTPN5	NM_006906	human	genbank	54_36p	-1	validated	missense	c.365	p.S122C	0.056	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
TFIP11	24144	genome.wustl.edu	36	22	25222055	25222055	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	22	25222055	25222055	G	A	SNP	TFIP11	NM_001008697	human	genbank	54_36p	-1	validated	silent	c.1833	p.N611	1.000	HMMPfam_TFP11	HMMSmart_SM00443,HMMPfam_G-patch,HMMPfam_TFP11	-	no_errors
NIPSNAP1	8508	genome.wustl.edu	36	22	28284897	28284897	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	22	28284897	28284897	C	T	SNP	NIPSNAP1	NM_003634	human	genbank	54_36p	-1	reviewed	nonsense	c.752	p.W251*	1.000	HMMPfam_NIPSNAP	HMMPfam_NIPSNAP	-	no_errors
XDH	7498	genome.wustl.edu	36	2	31450252	31450252	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	2	31450252	31450252	C	A	SNP	XDH	NM_000379	human	genbank	54_36p	-1	reviewed	missense	c.1677	p.Q559H	1.000	superfamily_Aldxan_dh_hamm	superfamily_Ferredoxin,HMMPfam_Fer2,PatternScan_2FE2S_FER_1,HMMPfam_Fer2_2,superfamily_2Fe-2S_bind,superfamily_FAD-binding_2,HMMPfam_FAD_binding_5,superfamily_CO_deh_flav_C,HMMPfam_CO_deh_flav_C,superfamily_Aldxan_dh_hamm,HMMPfam_Ald_Xan_dh_C,superfamily_Ald_xan_DH_mo_bd,HMMPfam_Ald_Xan_dh_C2,PatternScan_MOLYBDOPTERIN_EUK	-	no_errors
MOCOS	55034	genome.wustl.edu	36	18	32039062	32039062	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	18	32039062	32039062	A	G	SNP	MOCOS	NM_017947	human	genbank	54_36p	+1	validated	missense	c.1043	p.H348R	1.000	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5,superfamily_PK beta-barrel domain-like,HMMPfam_MOSC_N,HMMPfam_MOSC	-	no_errors
VCP	7415	genome.wustl.edu	36	9	35057954	35057954	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	9	35057954	35057954	T	A	SNP	VCP	NM_007126	human	genbank	54_36p	-1	reviewed	missense	c.236	p.D79V	1.000	superfamily_ADC-like,HMMPfam_CDC48_N	superfamily_ADC-like,HMMPfam_CDC48_N,superfamily_Cdc48 domain 2-like,HMMPfam_CDC48_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42738739	42738739	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	15	42738739	42738739	A	C	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	missense	c.497	p.L166R	0.895	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
LOC729102	729102	genome.wustl.edu	36	3	42906274	42906274	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	3	42906274	42906274	G	T	SNP	LOC729102	XR_015895	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.117	-	-	-	pseudogene
LOC100130881	0	genome.wustl.edu	36	10	43311374	43311374	+	RNA	SNP	G	G	C	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	10	43311374	43311374	G	C	SNP	LOC100130881	XR_037727	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
ZFP36	7538	genome.wustl.edu	36	19	44590260	44590260	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	19	44590260	44590260	C	A	SNP	ZFP36	NM_003407	human	genbank	54_36p	+1	provisional	missense	c.62	p.S21Y	0.014	NULL	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	-	no_errors
ZMIZ2	83637	genome.wustl.edu	36	7	44771492	44771492	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	7	44771492	44771492	G	A	SNP	ZMIZ2	NM_031449	human	genbank	54_36p	+1	validated	silent	c.2031	p.T677	0.485	NULL	superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors
C16orf87	388272	genome.wustl.edu	36	16	45415849	45415849	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	16	45415849	45415849	C	G	SNP	C16orf87	NM_001001436	human	genbank	54_36p	-1	predicted	missense	c.113	p.S38T	1.000	HMMPfam_UPF0547	HMMPfam_UPF0547	-	no_errors
SULF2	55959	genome.wustl.edu	36	20	45752415	45752415	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	20	45752415	45752415	C	T	SNP	SULF2	NM_018837	human	genbank	54_36p	-1	validated	missense	c.599	p.S200N	1.000	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1	-	no_errors
HDC	3067	genome.wustl.edu	36	15	48327775	48327775	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	15	48327775	48327775	G	A	SNP	HDC	NM_002112	human	genbank	54_36p	-1	validated	missense	c.1099	p.R367W	1.000	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Pyridoxal_deC	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC	-	no_errors
P4HTM	54681	genome.wustl.edu	36	3	49017401	49017401	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	3	49017401	49017401	A	G	SNP	P4HTM	NM_177938	human	genbank	54_36p	+1	reviewed	missense	c.991	p.S331G	1.000	HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy	superfamily_SSF47473,HMMSmart_P4Hc,PatternScan_EF_HAND_1,HMMPfam_2OG-FeII_Oxy	-	no_errors
SPATA18	132671	genome.wustl.edu	36	4	52632931	52632931	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	4	52632931	52632931	G	C	SNP	SPATA18	NM_145263	human	genbank	54_36p	+1	provisional	missense	c.610	p.E204Q	0.004	NULL	NULL	-	no_errors
ZNF609	23060	genome.wustl.edu	36	15	62579073	62579073	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	15	62579073	62579073	G	A	SNP	ZNF609	NM_015042	human	genbank	54_36p	+1	provisional	silent	c.402	p.L134	0.998	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NOL11	25926	genome.wustl.edu	36	17	63164548	63164548	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	17	63164548	63164548	G	T	SNP	NOL11	NM_015462	human	genbank	54_36p	+1	provisional	missense	c.1527	p.L509F	0.993	NULL	HMMPfam_NUC205	-	no_errors
UACA	55075	genome.wustl.edu	36	15	68759060	68759060	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	15	68759060	68759060	T	C	SNP	UACA	NM_018003	human	genbank	54_36p	-1	validated	missense	c.832	p.T278A	0.012	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_Pox_A_type_inc	-	no_errors
SLC7A3	84889	genome.wustl.edu	36	X	70064496	70064496	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	70064496	70064496	G	T	SNP	SLC7A3	NM_001048164	human	genbank	54_36p	-1	validated	missense	c.920	p.T307N	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
XIST	7503	genome.wustl.edu	36	X	72982071	72982071	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	72982071	72982071	G	A	SNP	XIST	NR_001564	human	genbank	54_36p	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC441775	441775	genome.wustl.edu	36	16	74826755	74826755	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	16	74826755	74826755	G	A	SNP	LOC441775	XR_042366	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.992	-	-	-	pseudogene
HIP1	3092	genome.wustl.edu	36	7	75027068	75027068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	7	75027068	75027068	C	T	SNP	HIP1	NM_005338	human	genbank	54_36p	-1	reviewed	missense	c.1279	p.A427T	0.004	NULL	HMMPfam_ANTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273,superfamily_ARM repeat,superfamily_I/LWEQ domain (Pfam 01608),HMMSmart_SM00307,HMMPfam_I_LWEQ	-	no_errors
LOC440311	440311	genome.wustl.edu	36	15	93201127	93201127	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	15	93201127	93201127	G	A	SNP	LOC440311	XR_016779	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.016	-	-	-	pseudogene
LOXL4	84171	genome.wustl.edu	36	10	100007737	100007737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	10	100007737	100007737	G	A	SNP	LOXL4	NM_032211	human	genbank	54_36p	-1	reviewed	silent	c.1096	p.L366	0.977	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors
HSP90B1	7184	genome.wustl.edu	36	12	102859577	102859577	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	12	102859577	102859577	A	T	SNP	HSP90B1	NM_003299	human	genbank	54_36p	+1	provisional	missense	c.1271	p.D424V	1.000	HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold	superfamily_ATP_bd_ATPase,PatternScan_HSP90,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF110942,PatternScan_ER_TARGET	-	no_errors
IL1RAPL2	26280	genome.wustl.edu	36	X	104871332	104871332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	104871332	104871332	G	A	SNP	IL1RAPL2	NM_017416	human	genbank	54_36p	+1	reviewed	missense	c.1040	p.R347H	1.000	HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
IKBKAP	8518	genome.wustl.edu	36	9	110680782	110680782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	9	110680782	110680782	C	T	SNP	IKBKAP	NM_003640	human	genbank	54_36p	-1	reviewed	silent	c.3642	p.E1214	1.000	NULL	HMMPfam_IKI3,superfamily_Amine_DH_B_like	-	no_errors
ADAM12	8038	genome.wustl.edu	36	10	127728178	127728178	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	10	127728178	127728178	C	G	SNP	ADAM12	NM_003474	human	genbank	54_36p	-1	reviewed	missense	c.1669	p.D557H	1.000	HMMSmart_SM00608,HMMPfam_ADAM_CR	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2"	-	no_errors
OCRL	4952	genome.wustl.edu	36	X	128551916	128551916	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	128551916	128551916	C	T	SNP	OCRL	NM_000276	human	genbank	54_36p	+1	reviewed	silent	c.2694	p.S898	0.625	NULL	superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
SLC9A6	10479	genome.wustl.edu	36	X	134934213	134934213	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	134934213	134934213	G	T	SNP	SLC9A6	NM_001042537	human	genbank	54_36p	+1	validated	silent	c.1521	p.R507	0.998	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
SLITRK4	139065	genome.wustl.edu	36	X	142545837	142545837	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	142545837	142545837	G	T	SNP	SLITRK4	NM_173078	human	genbank	54_36p	-1	validated	missense	c.754	p.L252I	1.000	superfamily_L domain-like,HMMSmart_SM00082	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors
TCERG1	10915	genome.wustl.edu	36	5	145829361	145829361	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	5	145829361	145829361	A	G	SNP	TCERG1	NM_006706	human	genbank	54_36p	+1	reviewed	silent	c.1260	p.A420	0.993	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_FF domain,HMMSmart_SM00441,HMMPfam_FF	-	no_errors
LOC286456	286456	genome.wustl.edu	36	X	150145162	150145162	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	150145162	150145162	C	A	SNP	LOC286456	XR_016302	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.953	-	-	-	pseudogene
BCAP31	10134	genome.wustl.edu	36	X	152634327	152634327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	X	152634327	152634327	C	T	SNP	BCAP31	NM_005745	human	genbank	54_36p	-1	reviewed	missense	c.205	p.E69K	0.998	HMMPfam_Bap31	HMMPfam_Bap31	-	no_errors
RNF32	140545	genome.wustl.edu	36	7	156140126	156140126	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	7	156140126	156140126	G	A	SNP	RNF32	NM_030936	human	genbank	54_36p	+1	reviewed	missense	c.370	p.V124M	0.003	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_IQ	-	no_errors
LMBR1	64327	genome.wustl.edu	36	7	156210910	156210910	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	7	156210910	156210910	C	T	SNP	LMBR1	NM_022458	human	genbank	54_36p	-1	reviewed	missense	c.1138	p.D380N	1.000	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
ABCC5	10057	genome.wustl.edu	36	3	185147976	185147976	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	3	185147976	185147976	C	G	SNP	ABCC5	NM_005688	human	genbank	54_36p	-1	reviewed	missense	c.3244	p.D1082H	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
NRP2	8828	genome.wustl.edu	36	2	206349489	206349489	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	2	206349489	206349489	C	G	SNP	NRP2	NM_018534	human	genbank	54_36p	+1	reviewed	missense	c.2715	p.H905Q	0.942	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM	-	no_errors
C2orf80	389073	genome.wustl.edu	36	2	208745037	208745037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	2	208745037	208745037	C	T	SNP	C2orf80	NM_001099334	human	genbank	54_36p	-1	validated	missense	c.374	p.R125Q	0.146	NULL	NULL	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209037572	209037572	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	1	209037572	209037572	C	T	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.1816	p.D606N	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219604270	219604270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	2	219604270	219604270	C	T	SNP	CCDC108	NM_194302	human	genbank	54_36p	-1	provisional	missense	c.817	p.D273N	1.000	superfamily_PapD-like	PatternScan_MGMT,superfamily_PapD-like	-	no_errors
ITPKB	3707	genome.wustl.edu	36	1	224990523	224990523	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	1	224990523	224990523	G	A	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	silent	c.1260	p.S420	0.000	NULL	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237940650	237940650	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	2	237940650	237940650	A	G	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.4919	p.I1640T	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
TRIM58	25893	genome.wustl.edu	36	1	246106083	246106083	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	1	246106083	246106083	C	T	SNP	TRIM58	NM_015431	human	genbank	54_36p	+1	validated	missense	c.1130	p.P377L	0.235	HMMPfam_SPRY,HMMSmart_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
ENSG00000223073	0	genome.wustl.edu	36	MT	516	517	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	CA	CA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	MT	516	517	CA	-	DEL	ENSG00000223073	ENST00000411141	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	(deletion:rna[155,931])	no_errors
MT-CO2	0	genome.wustl.edu	36	MT	7671	7672	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	AT	AT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	MT	7671	7672	AT	-	DEL	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	frame_shift_del	c.85_86	p.M29fs	NULL	HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region,superfamily_Cupredoxins,HMMPfam_COX2,PatternScan_COX2	(deletion:cds_exon[7587,8270])	no_errors
CD109	135228	genome.wustl.edu	36	6	74464017	74464018	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	6	74464017	74464018	-	T	INS	CD109	NM_133493	human	genbank	54_36p	+1	validated	splice_site_ins	c.247+1_247+1	e2+1	1.000:0.996	-	-	-	no_errors
PSMD14	10213	genome.wustl.edu	36	2	161883607	161883618	+	In_Frame_Del	DEL	GGAGGTATGCCT	GGAGGTATGCCT	-	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	GGAGGTATGCCT	GGAGGTATGCCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	2	161883607	161883618	GGAGGTATGCCT	-	DEL	PSMD14	NM_005805	human	genbank	54_36p	+1	validated	in_frame_del	c.25_36	p.GMPG10in_frame_del	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232	(deletion:cds_exon[161883583,161883630])	no_errors
OR2G6	391211	genome.wustl.edu	36	1	246751725	246751738	+	Frame_Shift_Del	DEL	ACTCCAGACTCCAC	ACTCCAGACTCCAC	-	novel	unknown	TCGA-29-1688-01A-01W-0633-09	TCGA-29-1688-10A-01W-0633-09	ACTCCAGACTCCAC	ACTCCAGACTCCAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	083e3d14-3756-4101-a93d-bc76f2c0d59c	e4318781-2a5f-412b-aaa5-74827d79a63d	1	246751725	246751738	ACTCCAGACTCCAC	-	DEL	OR2G6	NM_001013355	human	genbank	54_36p	+1	validated	frame_shift_del	c.155_168	p.R54fs	0.024:0.002:0.002:0.004:0.001:0.001:0.003:0.079:0.991:0.997:0.994:0.994:0.984:0.717	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[246751571,246752521])	no_errors
