Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-CO3	4514	genome.wustl.edu	36	MT	8507	8507	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	MT	8507	8507	T	C	SNP	MT-CO3	ENST00000361851	human	ensembl	54_36p	+1	known	silent	c.141	p.Y47	NULL	HMMPfam_ATP-synt_8	HMMPfam_ATP-synt_8	-	no_errors
uc010djz.1	0	genome.wustl.edu	36	18	38209	38209	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	18	38209	38209	C	T	SNP	uc010djz.1	ENST00000308911	human	ensembl	54_36p	-1	known	silent	c.516	p.S172	1.000	superfamily_Tubulin_FtsZ,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-	no_errors
CRIPAK	285464	genome.wustl.edu	36	4	1378429	1378429	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	4	1378429	1378429	G	A	SNP	CRIPAK	NM_175918	human	genbank	54_36p	+1	validated	missense	c.130	p.A44T	0.002	HMMSmart_PostSET	HMMSmart_PostSET	-	no_errors
RSPH10B	222967	genome.wustl.edu	36	7	5971849	5971849	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	7	5971849	5971849	C	T	SNP	RSPH10B	NM_173565	human	genbank	54_36p	-1	validated	missense	c.275	p.R92H	0.739	HMMPfam_MORN,superfamily_SSF82185	HMMPfam_MORN,superfamily_SSF82185,HMMSmart_MORN	-	no_errors
RSPH10B2	728194	genome.wustl.edu	36	7	6765260	6765260	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	7	6765260	6765260	G	A	SNP	RSPH10B2	NM_001099697	human	genbank	54_36p	+1	provisional	missense	c.275	p.R92H	0.623	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698	-	no_errors
DNAH2	146754	genome.wustl.edu	36	17	7581119	7581119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	17	7581119	7581119	C	T	SNP	DNAH2	NM_020877	human	genbank	54_36p	+1	validated	missense	c.988	p.R330C	0.000	HMMPfam_DHC_N1	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
OR2Z1	284383	genome.wustl.edu	36	19	8702588	8702588	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	19	8702588	8702588	C	G	SNP	OR2Z1	NM_001004699	human	genbank	54_36p	+1	provisional	silent	c.198	p.L66	0.981	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10505014	10505014	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	8	10505014	10505014	C	A	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.4004	p.G1335V	0.003	NULL	superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen	-	no_errors
SPIRE1	56907	genome.wustl.edu	36	18	12502507	12502507	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	18	12502507	12502507	C	A	SNP	SPIRE1	NM_020148	human	genbank	54_36p	-1	validated	missense	c.276	p.M92I	1.000	NULL	superfamily_FYVE_PHD_ZnF	-	no_errors
NBPF1	55672	genome.wustl.edu	36	1	16775443	16775443	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	16775443	16775443	C	T	SNP	NBPF1	ENST00000287968	human	ensembl	54_36p	-1	known	silent	c.192	p.P64	0.002	NULL	HMMPfam_DUF1220	-	no_errors
ENSG00000212455	0	genome.wustl.edu	36	2	18085396	18085396	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	2	18085396	18085396	G	A	SNP	ENSG00000212455	ENST00000391153	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.988	-	-	-	no_errors
ELA3A	10136	genome.wustl.edu	36	1	22208870	22208870	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	22208870	22208870	G	T	SNP	ELA3A	NM_005747	human	genbank	54_36p	+1	reviewed	missense	c.728	p.G243V	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LOC100133627	0	genome.wustl.edu	36	8	23172136	23172136	+	RNA	SNP	A	A	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	8	23172136	23172136	A	G	SNP	LOC100133627	XR_037285	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
TAOK1	57551	genome.wustl.edu	36	17	24862050	24862050	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	17	24862050	24862050	A	G	SNP	TAOK1	NM_020791	human	genbank	54_36p	+1	validated	missense	c.1618	p.I540V	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GPR113	165082	genome.wustl.edu	36	2	26387958	26387958	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	2	26387958	26387958	G	A	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	silent	c.1545	p.H515	0.502	HMMPfam_GPS,HMMSmart_GPS	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
C1orf172	126695	genome.wustl.edu	36	1	27150530	27150530	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	27150530	27150530	C	T	SNP	C1orf172	NM_152365	human	genbank	54_36p	-1	predicted	missense	c.929	p.R310H	0.905	NULL	NULL	-	no_errors
LOC728888	728888	genome.wustl.edu	36	16	29302053	29302053	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	16	29302053	29302053	G	T	SNP	LOC728888	XR_015889	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
DEFB118	117285	genome.wustl.edu	36	20	29424452	29424452	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	20	29424452	29424452	C	T	SNP	DEFB118	NM_054112	human	genbank	54_36p	+1	provisional	nonsense	c.190	p.R64*	0.000	NULL	NULL	-	no_errors
SEZ6L2	26470	genome.wustl.edu	36	16	29806522	29806522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	16	29806522	29806522	C	T	SNP	SEZ6L2	NM_201575	human	genbank	54_36p	-1	validated	missense	c.1157	p.R386H	1.000	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB	-	no_errors
STRN3	29966	genome.wustl.edu	36	14	30486178	30486178	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	14	30486178	30486178	T	C	SNP	STRN3	NM_001083893	human	genbank	54_36p	-1	validated	silent	c.585	p.V195	0.996	HMMPfam_Striatin	HMMPfam_Striatin,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ASXL1	171023	genome.wustl.edu	36	20	30488111	30488111	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	20	30488111	30488111	C	T	SNP	ASXL1	NM_015338	human	genbank	54_36p	+1	reviewed	missense	c.3935	p.A1312V	0.001	NULL	NULL	-	no_errors
TUBB	203068	genome.wustl.edu	36	6	30799265	30799265	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	6	30799265	30799265	T	A	SNP	TUBB	NM_178014	human	genbank	54_36p	+1	provisional	silent	c.447	p.T149	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
MRM1	79922	genome.wustl.edu	36	17	32032711	32032711	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	17	32032711	32032711	G	C	SNP	MRM1	NM_024864	human	genbank	54_36p	+1	validated	missense	c.359	p.C120S	1.000	superfamily_L30e-like,HMMPfam_SpoU_sub_bind,superfamily_alpha/beta knot	superfamily_L30e-like,HMMPfam_SpoU_sub_bind,superfamily_alpha/beta knot,HMMPfam_SpoU_methylase	-	no_errors
GJD4	219770	genome.wustl.edu	36	10	35936706	35936706	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	10	35936706	35936706	C	T	SNP	GJD4	NM_153368	human	genbank	54_36p	+1	validated	missense	c.259	p.L87F	0.374	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
SOS1	6654	genome.wustl.edu	36	2	39066644	39066644	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	2	39066644	39066644	G	A	SNP	SOS1	NM_005633	human	genbank	54_36p	-1	reviewed	missense	c.3827	p.P1276L	1.000	NULL	superfamily_Histone-fold,HMMPfam_Histone,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
IPO13	9670	genome.wustl.edu	36	1	44199443	44199443	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	44199443	44199443	C	T	SNP	IPO13	NM_014652	human	genbank	54_36p	+1	reviewed	missense	c.2266	p.H756Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors
CROP	51747	genome.wustl.edu	36	17	46178167	46178167	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	17	46178167	46178167	C	T	SNP	CROP	NM_006107	human	genbank	54_36p	+1	reviewed	missense	c.781	p.R261W	0.980	HMMPfam_LUC7	HMMPfam_LUC7	-	no_errors
LOC387924	387924	genome.wustl.edu	36	13	48682556	48682556	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	13	48682556	48682556	C	T	SNP	LOC387924	XR_017443	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.951	-	-	-	pseudogene
NICN1	84276	genome.wustl.edu	36	3	49438704	49438704	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	3	49438704	49438704	C	T	SNP	NICN1	NM_032316	human	genbank	54_36p	-1	reviewed	silent	c.294	p.S98	0.968	NULL	NULL	-	no_errors
LOC220433	220433	genome.wustl.edu	36	13	50933431	50933431	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	13	50933431	50933431	C	A	SNP	LOC220433	XR_041057	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
STAB1	23166	genome.wustl.edu	36	3	52526050	52526050	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	3	52526050	52526050	C	T	SNP	STAB1	NM_015136	human	genbank	54_36p	+1	reviewed	silent	c.4374	p.P1458	0.991	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00180,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FAS1 domain,HMMSmart_SM00554,HMMPfam_Fasciclin,PatternScan_CYTOCHROME_P450,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1	-	no_errors
NUP62	23636	genome.wustl.edu	36	19	55104029	55104029	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	19	55104029	55104029	C	G	SNP	NUP62	NM_012346	human	genbank	54_36p	-1	reviewed	missense	c.848	p.S283T	0.018	NULL	HMMPfam_Nsp1_C	-	no_errors
LOC728115	728115	genome.wustl.edu	36	18	55834779	55834779	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	18	55834779	55834779	G	A	SNP	LOC728115	XR_038858	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.072	-	-	-	pseudogene
PSMC5	5705	genome.wustl.edu	36	17	59261906	59261906	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	17	59261906	59261906	G	A	SNP	PSMC5	NM_002805	human	genbank	54_36p	+1	reviewed	silent	c.558	p.V186	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
NLRP4	147945	genome.wustl.edu	36	19	61064619	61064619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	19	61064619	61064619	G	A	SNP	NLRP4	NM_134444	human	genbank	54_36p	+1	validated	missense	c.1912	p.G638R	0.000	superfamily_RNI-like,HMMSmart_SM00368	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63750876	63750876	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	14	63750876	63750876	G	C	SNP	SYNE2	NM_182914	human	genbank	54_36p	+1	validated	missense	c.19268	p.G6423A	0.487	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
CLEC18A	348174	genome.wustl.edu	36	16	68542884	68542884	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	16	68542884	68542884	G	A	SNP	CLEC18A	NM_182619	human	genbank	54_36p	+1	validated	silent	c.114	p.P38	0.003	superfamily_PR-1-like	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
TTC9	23508	genome.wustl.edu	36	14	70204132	70204132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	14	70204132	70204132	C	T	SNP	TTC9	NM_015351	human	genbank	54_36p	+1	reviewed	missense	c.505	p.R169W	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
ANKRD13C	81573	genome.wustl.edu	36	1	70515061	70515061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	70515061	70515061	C	T	SNP	ANKRD13C	NM_030816	human	genbank	54_36p	-1	validated	missense	c.1270	p.E424K	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
NAP1L3	4675	genome.wustl.edu	36	X	92814037	92814037	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	X	92814037	92814037	G	A	SNP	NAP1L3	NM_004538	human	genbank	54_36p	-1	reviewed	missense	c.923	p.P308L	1.000	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
LOC400061	400061	genome.wustl.edu	36	12	93439080	93439080	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	12	93439080	93439080	C	T	SNP	LOC400061	XR_016608	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
FILIP1L	11259	genome.wustl.edu	36	3	101050919	101050919	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	3	101050919	101050919	A	G	SNP	FILIP1L	NM_182909	human	genbank	54_36p	-1	validated	missense	c.2291	p.I764T	1.000	superfamily_Prefoldin	HMMPfam_CortBP2,superfamily_Prefoldin	-	no_errors
GBF1	8729	genome.wustl.edu	36	10	104126539	104126539	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	10	104126539	104126539	T	C	SNP	GBF1	NM_004193	human	genbank	54_36p	+1	provisional	missense	c.4277	p.L1426P	1.000	NULL	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7	-	no_errors
SFXN2	118980	genome.wustl.edu	36	10	104476503	104476503	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	10	104476503	104476503	G	A	SNP	SFXN2	NM_178858	human	genbank	54_36p	+1	validated	silent	c.120	p.E40	1.000	HMMPfam_Mtc	HMMPfam_Mtc	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106731942	106731942	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	X	106731942	106731942	A	G	SNP	FRMPD3	XM_042978	human	genbank	54_36p	+1	model	silent	c.4116	p.P1372	0.003	NULL	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
LOC389787	0	genome.wustl.edu	36	9	119885295	119885295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	9	119885295	119885295	C	T	SNP	LOC389787	XM_001725747	human	genbank	54_36p	-1	model	missense	c.85	p.E29K	0.100	HMMPfam_TCTP,superfamily_Mss4-like	HMMPfam_TCTP,superfamily_Mss4-like,PatternScan_TCTP_2	-	no_errors
CDK5RAP2	55755	genome.wustl.edu	36	9	122273866	122273866	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	9	122273866	122273866	G	A	SNP	CDK5RAP2	NM_018249	human	genbank	54_36p	-1	reviewed	silent	c.1839	p.S613	0.807	NULL	HMMPfam_Microtub_assoc	-	no_errors
LOC646255	646255	genome.wustl.edu	36	10	122882546	122882546	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	10	122882546	122882546	G	T	SNP	LOC646255	XR_017113	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.021	-	-	-	pseudogene
LOC729012	729012	genome.wustl.edu	36	9	124564331	124564331	+	Nonstop_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	9	124564331	124564331	T	C	SNP	LOC729012	XM_001130187	human	genbank	54_36p	+1	model	nonstop	c.364	p.*122R	0.438	NULL	NULL	-	no_errors
IRF5	3663	genome.wustl.edu	36	7	128374610	128374610	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	7	128374610	128374610	G	A	SNP	IRF5	NM_002200	human	genbank	54_36p	+1	reviewed	nonsense	c.542	p.W181*	0.391	NULL	HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3	-	no_errors
LOC100128116	0	genome.wustl.edu	36	5	146066114	146066114	+	RNA	SNP	C	C	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	5	146066114	146066114	C	G	SNP	LOC100128116	XR_039194	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	-	pseudogene
HRNR	388697	genome.wustl.edu	36	1	150453900	150453900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	150453900	150453900	C	T	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	missense	c.6829	p.G2277S	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150545179	150545179	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	150545179	150545179	T	C	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.8807	p.D2936G	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150545643	150545643	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	150545643	150545643	G	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.8343	p.D2781	0.000	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160888899	160888899	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	6	160888899	160888899	G	A	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	missense	c.5216	p.T1739M	0.000	HMMSmart_SM00130,superfamily_Kringle-like,HMMPfam_Kringle	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
GPR1	2825	genome.wustl.edu	36	2	206750042	206750042	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	2	206750042	206750042	C	T	SNP	GPR1	NM_001098199	human	genbank	54_36p	-1	validated	missense	c.175	p.V59I	0.995	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
COG2	22796	genome.wustl.edu	36	1	228887584	228887584	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	228887584	228887584	A	G	SNP	COG2	NM_007357	human	genbank	54_36p	+1	reviewed	silent	c.1359	p.R453	0.860	NULL	HMMPfam_COG2	-	no_errors
NCL	4691	genome.wustl.edu	36	2	232035517	232035517	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	2	232035517	232035517	G	A	SNP	NCL	ENST00000392033	human	ensembl	54_36p	-1	known	silent	c.147	p.D49	0.030	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361	-	no_errors
OR2T2	401992	genome.wustl.edu	36	1	246683387	246683387	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	246683387	246683387	C	T	SNP	OR2T2	NM_001004136	human	genbank	54_36p	+1	provisional	silent	c.666	p.I222	0.011	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC727833	727833	genome.wustl.edu	36	16	10113351	10113352	+	RNA	INS	-	-	AAGA	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	16	10113351	10113352	-	AAGA	INS	LOC727833	XR_015181	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
ENSG00000184669	0	genome.wustl.edu	36	11	17030390	17030390	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	11	17030390	17030390	C	-	DEL	ENSG00000184669	ENST00000333752	human	ensembl	54_36p	+1	novel	splice_site_del	c.NULL	NULL	0.179	-	-	(deletion:intron[17030388,17030391])	no_coding_region:pseudogene
ZNF683	257101	genome.wustl.edu	36	1	26563874	26563897	+	In_Frame_Del	DEL	CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG	-	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	CCACCGAGCGCTGGGGTGCCCCAG	CCACCGAGCGCTGGGGTGCCCCAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	26563874	26563897	CCACCGAGCGCTGGGGTGCCCCAG	-	DEL	ZNF683	NM_173574	human	genbank	54_36p	-1	validated	in_frame_del	c.750_727	p.LGHPSARW243in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.032:0.013:0.002:0.003:0.001:0.000:0.001:0.000:0.002:0.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[26563610,26564304])	no_errors
MCART2	147407	genome.wustl.edu	36	18	27593966	27593967	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	18	27593966	27593967	-	C	INS	MCART2	NM_001034172	human	genbank	54_36p	-1	validated	frame_shift_ins	c.657_656	p.L220fs	0.995:0.999	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
BAT2	7916	genome.wustl.edu	36	6	31703752	31703763	+	In_Frame_Del	DEL	CCTGCTGCCCCA	CCTGCTGCCCCA	-	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	CCTGCTGCCCCA	CCTGCTGCCCCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	6	31703752	31703763	CCTGCTGCCCCA	-	DEL	BAT2	NM_080686	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1522_1533	p.PPAA511in_frame_del	0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.999:0.993:0.773	NULL	HMMPfam_BAT2_N	(deletion:cds_exon[31703521,31703995])	no_errors
NLRC5	84166	genome.wustl.edu	36	16	55653344	55653347	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	AAAG	AAAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	16	55653344	55653347	AAAG	-	DEL	NLRC5	ENST00000327982	human	ensembl	54_36p	+1	known	frame_shift_del	c.3278_3281	p.K1096fs	0.005:0.001:0.000:0.000	NULL	HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	(deletion:cds_exon[55653273,55653357])	no_stop_codon
SPTB	6710	genome.wustl.edu	36	14	64286576	64286578	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	AGA	AGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	14	64286576	64286578	AGA	-	DEL	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	in_frame_del	c.6652_6650	p.F2217in_frame_del	1.000:1.000:1.000	HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	(deletion:cds_exon[64286452,64286625])	no_errors
DENND4B	9909	genome.wustl.edu	36	1	152173903	152173911	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	CTGCTGCTG	CTGCTGCTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	152173903	152173911	CTGCTGCTG	-	DEL	DENND4B	NM_014856	human	genbank	54_36p	-1	validated	in_frame_del	c.2730_2722	p.QQQ908in_frame_del	0.852:0.853:0.853:0.867:0.882:0.897:0.913:0.962:0.976	NULL	HMMSmart_uDENN,HMMPfam_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_PPR	(deletion:cds_exon[152173860,152174064])	no_errors
TOR1AIP1	26092	genome.wustl.edu	36	1	178137103	178137104	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-29-1690-01A-01W-0633-09	TCGA-29-1690-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	33e066de-5376-4149-97fa-bc4897a13c16	8a75c82b-7afe-4adc-94e5-6a1cd277a420	1	178137103	178137104	-	A	INS	TOR1AIP1	NM_015602	human	genbank	54_36p	+1	validated	frame_shift_ins	c.696_697	p.T232fs	0.008:0.008	HMMPfam_LAP1C	HMMPfam_LAP1C	-	no_errors
