Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
TRIB3	57761	genome.wustl.edu	36	20	324869	324869	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	20	324869	324869	G	A	SNP	TRIB3	NM_021158	human	genbank	54_36p	+1	reviewed	silent	c.612	p.E204	0.972	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
DIP2C	22982	genome.wustl.edu	36	10	405516	405516	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	405516	405516	C	T	SNP	DIP2C	NM_014974	human	genbank	54_36p	-1	reviewed	silent	c.2049	p.L683	0.997	superfamily_SSF56801	PatternScan_AMP_BINDING,HMMPfam_DMAP_binding,superfamily_SSF56801,HMMPfam_AMP-binding	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1222214	1222214	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	1222214	1222214	G	A	SNP	MUC5B	NM_002458	human	genbank	54_36p	+1	validated	missense	c.7537	p.A2513T	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors
NCRNA00168	0	genome.wustl.edu	36	10	1558842	1558842	+	RNA	SNP	G	T	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	1558842	1558842	G	T	SNP	NCRNA00168	NM_001098830	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000	-	-	-	rna_with_coding_region
TMC2	117532	genome.wustl.edu	36	20	2490553	2490553	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	20	2490553	2490553	G	C	SNP	TMC2	NM_080751	human	genbank	54_36p	+1	validated	missense	c.451	p.E151Q	1.000	NULL	HMMPfam_TMC	-	no_errors
SRRM2	23524	genome.wustl.edu	36	16	2757698	2757698	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	2757698	2757698	T	C	SNP	SRRM2	NM_016333	human	genbank	54_36p	+1	validated	missense	c.7168	p.Y2390H	0.914	NULL	HMMPfam_cwf21	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	2863406	2863406	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	2863406	2863406	C	A	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.8033	p.G2678V	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
HTT	3064	genome.wustl.edu	36	4	3206898	3206898	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	4	3206898	3206898	C	T	SNP	HTT	NM_002111	human	genbank	54_36p	+1	reviewed	missense	c.8546	p.P2849L	0.717	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
ZNF434	54925	genome.wustl.edu	36	16	3373208	3373208	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	3373208	3373208	C	T	SNP	ZNF434	NM_017810	human	genbank	54_36p	-1	provisional	missense	c.1103	p.G368E	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC100128423	0	genome.wustl.edu	36	11	3537624	3537624	+	RNA	SNP	T	G	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	3537624	3537624	T	G	SNP	LOC100128423	XR_038258	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LYAR	55646	genome.wustl.edu	36	4	4336347	4336347	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	4	4336347	4336347	T	G	SNP	LYAR	NM_017816	human	genbank	54_36p	-1	validated	silent	c.24	p.A8	0.923	NULL	HMMPfam_zf-LYAR	-	no_errors
SEC14L5	9717	genome.wustl.edu	36	16	4949297	4949297	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	4949297	4949297	G	C	SNP	SEC14L5	ENST00000251170	human	ensembl	54_36p	+1	known	missense	c.152	p.G51A	0.001	NULL	HMMPfam_PRELI,superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_CRAL_TRIO,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_start_codon
MUC16	94025	genome.wustl.edu	36	19	8927621	8927621	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	8927621	8927621	T	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.20825	p.K6942R	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
TAS2R1	50834	genome.wustl.edu	36	5	9682406	9682406	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	9682406	9682406	G	T	SNP	TAS2R1	NM_019599	human	genbank	54_36p	-1	reviewed	missense	c.739	p.L247I	0.000	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9973511	9973511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	9973511	9973511	G	A	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.896	p.P299L	0.000	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
UNQ9391	203074	genome.wustl.edu	36	8	10426425	10426425	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	10426425	10426425	G	T	SNP	UNQ9391	NM_198464	human	genbank	54_36p	+1	validated	missense	c.558	p.W186C	0.916	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
ODC1	4953	genome.wustl.edu	36	2	10501370	10501370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	10501370	10501370	G	A	SNP	ODC1	NM_002539	human	genbank	54_36p	-1	reviewed	missense	c.493	p.R165C	1.000	HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel	HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1,PatternScan_ODR_DC_2_2,superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC	-	no_errors
EMP2	2013	genome.wustl.edu	36	16	10534269	10534269	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	10534269	10534269	G	C	SNP	EMP2	NM_001424	human	genbank	54_36p	-1	validated	silent	c.498	p.R166	1.000	NULL	HMMPfam_PMP22_Claudin,PatternScan_PMP22_1,PatternScan_PMP22_2	-	no_errors
LOC100132755	0	genome.wustl.edu	36	Y	10647825	10647825	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	Y	10647825	10647825	T	C	SNP	LOC100132755	XM_001713806	human	genbank	54_36p	+1	model	missense	c.20	p.I7T	1.000	NULL	NULL	-	no_errors
CTR9	9646	genome.wustl.edu	36	11	10750656	10750656	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	10750656	10750656	T	G	SNP	CTR9	NM_014633	human	genbank	54_36p	+1	provisional	missense	c.2458	p.L820V	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors
TAS2R9	50835	genome.wustl.edu	36	12	10853411	10853411	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	10853411	10853411	A	G	SNP	TAS2R9	NM_023917	human	genbank	54_36p	-1	reviewed	silent	c.531	p.T177	0.003	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
PHF14	9678	genome.wustl.edu	36	7	10988950	10988950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	7	10988950	10988950	C	T	SNP	PHF14	NM_001007157	human	genbank	54_36p	+1	validated	missense	c.539	p.P180L	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING	-	no_errors
MASP2	10747	genome.wustl.edu	36	1	11029253	11029253	+	Missense_Mutation	SNP	T	T	C	rs72550870	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	11029253	11029253	T	C	SNP	MASP2	NM_006610	human	genbank	54_36p	-1	reviewed	missense	c.359	p.D120G	1.000	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER	-	no_errors
EXOSC10	5394	genome.wustl.edu	36	1	11052282	11052282	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	11052282	11052282	C	T	SNP	EXOSC10	NM_001001998	human	genbank	54_36p	-1	validated	silent	c.2409	p.K803	0.899	NULL	HMMPfam_PMC2NT,HMMPfam_3_5_exonuc,HMMSmart_SM00474,superfamily_Ribonuclease H-like,HMMSmart_SM00341,HMMPfam_HRDC	-	no_errors
FRAP1	2475	genome.wustl.edu	36	1	11216857	11216857	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	11216857	11216857	G	C	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.2261	p.A754G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
MCM10	55388	genome.wustl.edu	36	10	13262471	13262471	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	13262471	13262471	A	G	SNP	MCM10	NM_182751	human	genbank	54_36p	+1	reviewed	missense	c.791	p.E264G	1.000	NULL	HMMPfam_zf-primase,HMMPfam_Mcm10	-	no_errors
TCEANC	170082	genome.wustl.edu	36	X	13590674	13590674	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	13590674	13590674	T	C	SNP	TCEANC	NM_152634	human	genbank	54_36p	+1	validated	silent	c.216	p.H72	0.348	HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70	HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510,HMMPfam_TFIIS_M,superfamily_Zinc beta-ribbon	-	no_errors
ZFYVE20	64145	genome.wustl.edu	36	3	15090829	15090829	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	3	15090829	15090829	C	G	SNP	ZFYVE20	NM_022340	human	genbank	54_36p	-1	validated	missense	c.1819	p.G607R	0.008	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF	-	no_errors
IGSF21	84966	genome.wustl.edu	36	1	18564625	18564625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	18564625	18564625	C	T	SNP	IGSF21	NM_032880	human	genbank	54_36p	+1	provisional	missense	c.862	p.R288C	1.000	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	-	no_errors
PSD3	23362	genome.wustl.edu	36	8	18769748	18769748	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	18769748	18769748	G	T	SNP	PSD3	NM_015310	human	genbank	54_36p	-1	validated	missense	c.1350	p.D450E	1.000	NULL	HMMSmart_Sec7,HMMPfam_Sec7,superfamily_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
HAPLN4	404037	genome.wustl.edu	36	19	19232771	19232771	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	19232771	19232771	T	G	SNP	HAPLN4	NM_023002	human	genbank	54_36p	-1	validated	missense	c.335	p.Y112S	0.998	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1	-	no_errors
LOC648980	648980	genome.wustl.edu	36	22	19383111	19383111	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	22	19383111	19383111	G	A	SNP	LOC648980	XM_941280	human	genbank	54_36p	-1	model	silent	c.84	p.P28	1.000	NULL	HMMPfam_RhoGAP	-	pseudogene
OR11H4	390442	genome.wustl.edu	36	14	19781740	19781740	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	14	19781740	19781740	G	C	SNP	OR11H4	NM_001004479	human	genbank	54_36p	+1	provisional	missense	c.950	p.G317A	0.015	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20761393	20761393	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	20761393	20761393	G	A	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	+1	reviewed	missense	c.737	p.C246Y	1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors
EIF4G3	8672	genome.wustl.edu	36	1	21063759	21063759	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	21063759	21063759	C	A	SNP	EIF4G3	NM_003760	human	genbank	54_36p	-1	validated	nonsense	c.2635	p.E879*	1.000	superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543	superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,superfamily_PH domain-like,HMMSmart_SM00515,HMMPfam_W2	-	no_errors
DNAH11	8701	genome.wustl.edu	36	7	21551275	21551275	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	7	21551275	21551275	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	+1	known	missense	c.478	p.S160P	0.890	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
JPH4	84502	genome.wustl.edu	36	14	23110421	23110421	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	14	23110421	23110421	G	A	SNP	JPH4	NM_032452	human	genbank	54_36p	-1	reviewed	silent	c.1359	p.P453	0.971	NULL	superfamily_SSF82185,HMMSmart_MORN,HMMPfam_MORN	-	no_errors
RP11-45B20.2	387911	genome.wustl.edu	36	13	23368988	23368988	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	13	23368988	23368988	G	A	SNP	RP11-45B20.2	NM_001007537	human	genbank	54_36p	-1	provisional	silent	c.138	p.D46	0.990	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
C1QTNF9	338872	genome.wustl.edu	36	13	23788279	23788279	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	13	23788279	23788279	C	T	SNP	C1QTNF9	NM_178540	human	genbank	54_36p	+1	validated	silent	c.138	p.D46	1.000	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors
GALE	2582	genome.wustl.edu	36	1	23996921	23996921	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	23996921	23996921	G	T	SNP	GALE	NM_000403	human	genbank	54_36p	-1	reviewed	missense	c.379	p.L127M	0.998	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	-	no_errors
PHF12	57649	genome.wustl.edu	36	17	24258750	24258750	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	24258750	24258750	C	T	SNP	PHF12	NM_001033561	human	genbank	54_36p	-1	validated	missense	c.2525	p.C842Y	1.000	superfamily_SMAD/FHA domain	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SMAD/FHA domain	-	no_errors
NFE2L3	9603	genome.wustl.edu	36	7	26191218	26191218	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	7	26191218	26191218	C	G	SNP	NFE2L3	NM_004289	human	genbank	54_36p	+1	reviewed	missense	c.1375	p.H459D	0.004	NULL	superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC	-	no_errors
LOC100130112	0	genome.wustl.edu	36	17	26926735	26926735	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	26926735	26926735	C	T	SNP	LOC100130112	XM_001724608	human	genbank	54_36p	+1	model	silent	c.273	p.V91	0.000	NULL	NULL	-	no_errors
AGBL5	60509	genome.wustl.edu	36	2	27146555	27146555	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	27146555	27146555	T	C	SNP	AGBL5	NM_021831	human	genbank	54_36p	+1	validated	missense	c.2581	p.Y861H	1.000	NULL	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14	-	no_errors
SLC5A6	8884	genome.wustl.edu	36	2	27283978	27283978	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	27283978	27283978	C	T	SNP	SLC5A6	NM_021095	human	genbank	54_36p	-1	provisional	silent	c.45	p.S15	0.000	NULL	PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors
C2orf28	51374	genome.wustl.edu	36	2	27292908	27292908	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	27292908	27292908	G	T	SNP	C2orf28	NM_080592	human	genbank	54_36p	+1	reviewed	missense	c.666	p.E222D	1.000	HMMSmart_EGF	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
RNF160	26046	genome.wustl.edu	36	21	29265564	29265564	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	21	29265564	29265564	G	C	SNP	RNF160	NM_015565	human	genbank	54_36p	-1	validated	missense	c.884	p.S295C	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00744,HMMPfam_zf-C3HC4	-	no_errors
ITGAL	3683	genome.wustl.edu	36	16	30436475	30436475	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	30436475	30436475	C	G	SNP	ITGAL	NM_002209	human	genbank	54_36p	+1	reviewed	missense	c.2981	p.P994R	0.429	HMMPfam_Integrin_alpha2	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
C17orf66	256957	genome.wustl.edu	36	17	31217850	31217850	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	31217850	31217850	G	A	SNP	C17orf66	NM_152781	human	genbank	54_36p	-1	validated	silent	c.129	p.S43	0.973	NULL	superfamily_ARM repeat	-	no_errors
ZSCAN20	7579	genome.wustl.edu	36	1	33733485	33733485	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	33733485	33733485	A	G	SNP	ZSCAN20	NM_145238	human	genbank	54_36p	+1	validated	missense	c.2954	p.K985R	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,HMMSmart_SM00717,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ANKS1A	23294	genome.wustl.edu	36	6	35070156	35070156	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	6	35070156	35070156	T	G	SNP	ANKS1A	NM_015245	human	genbank	54_36p	+1	validated	missense	c.1402	p.L468V	0.004	NULL	HMMPfam_Ank,superfamily_ANK,HMMSmart_ANK,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	-	no_errors
TSHZ3	57616	genome.wustl.edu	36	19	36459619	36459619	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	36459619	36459619	G	C	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	missense	c.2920	p.P974A	1.000	NULL	PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
LOC391777	391777	genome.wustl.edu	36	5	37121343	37121343	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	37121343	37121343	T	C	SNP	LOC391777	XR_016978	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DNALI1	7802	genome.wustl.edu	36	1	37795136	37795136	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	37795136	37795136	C	T	SNP	DNALI1	NM_003462	human	genbank	54_36p	+1	reviewed	missense	c.20	p.A7V	0.675	NULL	HMMPfam_Ax_dynein_light	-	no_errors
DISP2	85455	genome.wustl.edu	36	15	38447072	38447072	+	Silent	SNP	G	T	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	15	38447072	38447072	G	T	SNP	DISP2	NM_033510	human	genbank	54_36p	+1	reviewed	silent	c.1467	p.T489	0.711	superfamily_SSF82866	superfamily_SSF82866	-	no_errors
MPP3	4356	genome.wustl.edu	36	17	39241893	39241893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	39241893	39241893	G	A	SNP	MPP3	NM_001932	human	genbank	54_36p	-1	reviewed	missense	c.1538	p.T513M	0.854	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072	HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors
MYRIP	25924	genome.wustl.edu	36	3	39917345	39917345	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	3	39917345	39917345	G	A	SNP	MYRIP	NM_015460	human	genbank	54_36p	+1	validated	missense	c.34	p.D12N	0.965	superfamily_FYVE_PHD_ZnF	superfamily_FYVE_PHD_ZnF,HMMPfam_MOBP	-	no_errors
ELL3	80237	genome.wustl.edu	36	15	41855592	41855592	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	15	41855592	41855592	A	G	SNP	ELL3	NM_025165	human	genbank	54_36p	-1	validated	missense	c.218	p.V73A	0.999	HMMPfam_ELL	HMMPfam_ELL,HMMPfam_Occludin_ELL	-	no_errors
VDAC3	7419	genome.wustl.edu	36	8	42380048	42380048	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	42380048	42380048	C	A	SNP	VDAC3	NM_005662	human	genbank	54_36p	+1	validated	missense	c.614	p.S205Y	0.987	HMMPfam_Porin_3	HMMPfam_Porin_3,PatternScan_EUKARYOTIC_PORIN	-	no_errors
PIAS2	9063	genome.wustl.edu	36	18	42689551	42689551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	18	42689551	42689551	C	A	SNP	PIAS2	NM_004671	human	genbank	54_36p	-1	validated	missense	c.610	p.D204Y	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors
C5orf28	64417	genome.wustl.edu	36	5	43489557	43489557	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	43489557	43489557	T	C	SNP	C5orf28	NM_022483	human	genbank	54_36p	-1	validated	missense	c.272	p.D91G	1.000	NULL	NULL	-	no_errors
CELSR1	9620	genome.wustl.edu	36	22	45171287	45171287	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	22	45171287	45171287	C	G	SNP	CELSR1	NM_014246	human	genbank	54_36p	-1	reviewed	missense	c.5722	p.V1908L	0.948	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
NASP	4678	genome.wustl.edu	36	1	45855768	45855768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	45855768	45855768	C	T	SNP	NASP	NM_172164	human	genbank	54_36p	+1	reviewed	missense	c.2210	p.A737V	1.000	NULL	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMPfam_SHNi-TPR	-	no_errors
IPP	3652	genome.wustl.edu	36	1	45984642	45984642	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	45984642	45984642	G	C	SNP	IPP	NM_005897	human	genbank	54_36p	-1	reviewed	missense	c.29	p.A10G	0.003	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
C18orf24	220134	genome.wustl.edu	36	18	46156252	46156252	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	18	46156252	46156252	C	T	SNP	C18orf24	NM_001039535	human	genbank	54_36p	+1	validated	silent	c.54	p.G18	0.386	HMMPfam_DUF1395	HMMPfam_DUF1395	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46262049	46262049	+	Silent	SNP	G	T	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	46262049	46262049	G	T	SNP	MAST2	NM_015112	human	genbank	54_36p	+1	validated	silent	c.1590	p.R530	0.998	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	HMMPfam_DUF1908,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	-	no_errors
HTR2A	3356	genome.wustl.edu	36	13	46307024	46307024	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	13	46307024	46307024	C	G	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	missense	c.1365	p.E455D	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
AXL	558	genome.wustl.edu	36	19	46441421	46441421	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	46441421	46441421	G	C	SNP	AXL	NM_021913	human	genbank	54_36p	+1	reviewed	missense	c.1506	p.K502N	0.998	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
RAD54L	8438	genome.wustl.edu	36	1	46499558	46499558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	46499558	46499558	C	T	SNP	RAD54L	NM_003579	human	genbank	54_36p	+1	reviewed	missense	c.805	p.P269S	1.000	HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N	HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
RB1	5925	genome.wustl.edu	36	13	47925157	47925157	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	13	47925157	47925157	C	T	SNP	RB1	NM_000321	human	genbank	54_36p	+1	reviewed	nonsense	c.1723	p.Q575*	1.000	superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors
HUS1	3364	genome.wustl.edu	36	7	47984641	47984641	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	7	47984641	47984641	C	T	SNP	HUS1	NM_004507	human	genbank	54_36p	-1	reviewed	silent	c.255	p.S85	0.857	HMMPfam_Hus1	HMMPfam_Hus1	-	no_errors
C6orf138	442213	genome.wustl.edu	36	6	48144152	48144152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	6	48144152	48144152	C	T	SNP	C6orf138	NM_001013732	human	genbank	54_36p	-1	validated	missense	c.148	p.E50K	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
EBP	10682	genome.wustl.edu	36	X	48267233	48267233	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	48267233	48267233	G	A	SNP	EBP	NM_006579	human	genbank	54_36p	+1	reviewed	missense	c.130	p.V44M	0.538	HMMPfam_EBP	HMMPfam_EBP	-	no_errors
AP4E1	23431	genome.wustl.edu	36	15	49021199	49021199	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	15	49021199	49021199	G	T	SNP	AP4E1	NM_007347	human	genbank	54_36p	+1	validated	missense	c.1111	p.A371S	1.000	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,HMMPfam_Coatamer_beta_C	-	no_errors
MIOX	55586	genome.wustl.edu	36	22	49273317	49273317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	22	49273317	49273317	G	A	SNP	MIOX	NM_017584	human	genbank	54_36p	+1	validated	missense	c.314	p.G105D	1.000	HMMPfam_DUF706	HMMPfam_DUF706	-	no_errors
ZNF233	353355	genome.wustl.edu	36	19	49470523	49470523	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	49470523	49470523	A	T	SNP	ZNF233	NM_181756	human	genbank	54_36p	+1	provisional	missense	c.1870	p.M624L	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC728522	728522	genome.wustl.edu	36	12	50393180	50393180	+	RNA	SNP	C	G	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	50393180	50393180	C	G	SNP	LOC728522	XR_015716	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
AGAP7	0	genome.wustl.edu	36	10	51153202	51153202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	51153202	51153202	G	T	SNP	AGAP7	NM_001077685	human	genbank	54_36p	-1	provisional	missense	c.270	p.F90L	0.996	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
CSAD	51380	genome.wustl.edu	36	12	51840304	51840304	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	51840304	51840304	C	T	SNP	CSAD	NM_015989	human	genbank	54_36p	-1	validated	missense	c.1033	p.V345M	0.142	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	-	no_errors
EHD2	30846	genome.wustl.edu	36	19	52920913	52920913	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	52920913	52920913	G	T	SNP	EHD2	NM_014601	human	genbank	54_36p	+1	reviewed	missense	c.535	p.A179S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors
HUWE1	10075	genome.wustl.edu	36	X	53638915	53638915	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	53638915	53638915	A	G	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	silent	c.3337	p.L1113	1.000	NULL	HMMPfam_DUF908,superfamily_ARM repeat,HMMPfam_DUF913,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_WWE,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
TRPM4	54795	genome.wustl.edu	36	19	54377857	54377857	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	54377857	54377857	A	G	SNP	TRPM4	NM_017636	human	genbank	54_36p	+1	provisional	missense	c.1474	p.K492E	0.006	NULL	HMMPfam_Ion_trans	-	no_errors
ENSG00000166007	0	genome.wustl.edu	36	11	54816310	54816310	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	54816310	54816310	G	C	SNP	ENSG00000166007	ENST00000309470	human	ensembl	54_36p	-1	known	missense	c.1179	p.H393Q	0.001	HMMPfam_SPRY	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMPfam_SPRY	-	no_start_codon:no_stop_codon
OR4A15	81328	genome.wustl.edu	36	11	54892429	54892429	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	54892429	54892429	A	G	SNP	OR4A15	NM_001005275	human	genbank	54_36p	+1	provisional	missense	c.494	p.N165S	0.203	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
STX16	8675	genome.wustl.edu	36	20	56676461	56676461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	20	56676461	56676461	G	A	SNP	STX16	NM_001001433	human	genbank	54_36p	+1	reviewed	missense	c.265	p.V89I	0.999	superfamily_t-snare proteins,HMMPfam_Syntaxin	superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors
PRG2	5553	genome.wustl.edu	36	11	56913204	56913204	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	56913204	56913204	A	G	SNP	PRG2	NM_002728	human	genbank	54_36p	-1	reviewed	missense	c.221	p.V74A	0.000	NULL	HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
SLC43A3	29015	genome.wustl.edu	36	11	56939132	56939132	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	56939132	56939132	G	A	SNP	SLC43A3	NM_014096	human	genbank	54_36p	-1	validated	nonsense	c.793	p.Q265*	0.280	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
ZNF766	90321	genome.wustl.edu	36	19	57477241	57477241	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	57477241	57477241	T	A	SNP	ZNF766	NM_001010851	human	genbank	54_36p	+1	validated	silent	c.84	p.P28	0.705	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MRC2	9902	genome.wustl.edu	36	17	58121791	58121791	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	58121791	58121791	C	A	SNP	MRC2	NM_006039	human	genbank	54_36p	+1	validated	missense	c.3949	p.H1317N	1.000	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,PatternScan_LIPOCALIN	-	no_errors
LILRB2	10288	genome.wustl.edu	36	19	59474707	59474707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	59474707	59474707	G	A	SNP	LILRB2	NM_005874	human	genbank	54_36p	-1	reviewed	missense	c.727	p.L243F	0.450	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
SERPINB3	6317	genome.wustl.edu	36	18	59475201	59475201	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	18	59475201	59475201	C	A	SNP	SERPINB3	NM_006919	human	genbank	54_36p	-1	validated	splice_site	c.613-1	e6-1	0.717	-	-	-	no_errors
SERPINB2	5055	genome.wustl.edu	36	18	59720095	59720095	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	18	59720095	59720095	C	G	SNP	SERPINB2	NM_002575	human	genbank	54_36p	+1	validated	missense	c.677	p.S226W	0.667	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
CDH8	1006	genome.wustl.edu	36	16	60612573	60612573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	60612573	60612573	G	A	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	missense	c.236	p.P79L	1.000	superfamily_Cadherin,HMMPfam_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
DAGLA	747	genome.wustl.edu	36	11	61267622	61267622	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	61267622	61267622	G	A	SNP	DAGLA	NM_006133	human	genbank	54_36p	+1	validated	silent	c.2214	p.E738	0.997	NULL	superfamily_SSF53474,HMMPfam_Lipase_3,PatternScan_LIPASE_SER	-	no_errors
ZNF773	374928	genome.wustl.edu	36	19	62707919	62707919	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	19	62707919	62707919	T	C	SNP	ZNF773	NM_198542	human	genbank	54_36p	+1	provisional	missense	c.116	p.L39P	0.261	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63701868	63701868	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	14	63701868	63701868	C	A	SNP	SYNE2	NM_182914	human	genbank	54_36p	+1	validated	missense	c.16592	p.P5531H	0.755	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
LOC283867	283867	genome.wustl.edu	36	16	63902858	63902858	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	63902858	63902858	C	T	SNP	LOC283867	NM_001101346	human	genbank	54_36p	-1	inferred	missense	c.220	p.E74K	0.000	NULL	NULL	-	no_errors
NRBF2	29982	genome.wustl.edu	36	10	64583845	64583845	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	64583845	64583845	C	A	SNP	NRBF2	NM_030759	human	genbank	54_36p	+1	validated	missense	c.725	p.T242N	0.499	HMMPfam_DUF1875	HMMPfam_DUF1875	-	no_errors
CD248	57124	genome.wustl.edu	36	11	65839717	65839717	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	65839717	65839717	A	G	SNP	CD248	NM_020404	human	genbank	54_36p	-1	validated	missense	c.1358	p.V453A	0.000	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
TRIM55	84675	genome.wustl.edu	36	8	67203193	67203193	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	67203193	67203193	A	C	SNP	TRIM55	NM_184085	human	genbank	54_36p	+1	reviewed	missense	c.269	p.H90P	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336	-	no_errors
SDK2	54549	genome.wustl.edu	36	17	68895746	68895746	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	68895746	68895746	C	T	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	silent	c.3255	p.P1085	0.058	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
MARVELD3	91862	genome.wustl.edu	36	16	70232337	70232337	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	70232337	70232337	G	A	SNP	MARVELD3	NM_001017967	human	genbank	54_36p	+1	validated	missense	c.1139	p.R380H	0.976	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
NLGN3	54413	genome.wustl.edu	36	X	70303979	70303979	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	70303979	70303979	T	C	SNP	NLGN3	NM_018977	human	genbank	54_36p	+1	validated	missense	c.1247	p.F416S	1.000	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
COL9A1	1297	genome.wustl.edu	36	6	71068427	71068427	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	6	71068427	71068427	G	T	SNP	COL9A1	NM_001851	human	genbank	54_36p	-1	reviewed	missense	c.86	p.P29H	0.996	NULL	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors
SIPA1L1	26037	genome.wustl.edu	36	14	71208068	71208068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	14	71208068	71208068	C	T	SNP	SIPA1L1	NM_015556	human	genbank	54_36p	+1	provisional	missense	c.2735	p.T912I	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
NCOA2	10499	genome.wustl.edu	36	8	71231824	71231824	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	71231824	71231824	A	T	SNP	NCOA2	NM_006540	human	genbank	54_36p	-1	validated	missense	c.1330	p.S444T	1.000	NULL	superfamily_HLH_basic,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMSmart_PAC,HMMPfam_SRC-1,superfamily_Nuc_recept_coact,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors
RNF121	55298	genome.wustl.edu	36	11	71371604	71371604	+	Silent	SNP	C	G	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	71371604	71371604	C	G	SNP	RNF121	NM_018320	human	genbank	54_36p	+1	reviewed	silent	c.393	p.T131	0.788	NULL	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING	-	no_errors
RLIM	51132	genome.wustl.edu	36	X	73732511	73732511	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	73732511	73732511	T	C	SNP	RLIM	NM_016120	human	genbank	54_36p	-1	reviewed	silent	c.27	p.K9	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
YLPM1	56252	genome.wustl.edu	36	14	74357587	74357587	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	14	74357587	74357587	C	T	SNP	YLPM1	NM_019589	human	genbank	54_36p	+1	validated	silent	c.6105	p.S2035	1.000	NULL	HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IL8	3576	genome.wustl.edu	36	4	74826174	74826174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	4	74826174	74826174	C	T	SNP	IL8	NM_000584	human	genbank	54_36p	+1	reviewed	missense	c.116	p.T39I	0.245	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CXC	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CXC	-	no_errors
HIP1	3092	genome.wustl.edu	36	7	75030470	75030470	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	7	75030470	75030470	C	T	SNP	HIP1	NM_005338	human	genbank	54_36p	-1	reviewed	silent	c.837	p.L279	0.854	HMMPfam_ANTH,superfamily_ARM repeat	HMMPfam_ANTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273,superfamily_ARM repeat,superfamily_I/LWEQ domain (Pfam 01608),HMMSmart_SM00307,HMMPfam_I_LWEQ	-	no_errors
NDST2	8509	genome.wustl.edu	36	10	75235519	75235519	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	75235519	75235519	C	A	SNP	NDST2	NM_003635	human	genbank	54_36p	-1	reviewed	missense	c.1578	p.M526I	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
LOC401074	401074	genome.wustl.edu	36	3	75802771	75802771	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	3	75802771	75802771	C	T	SNP	LOC401074	XM_001714392	human	genbank	54_36p	+1	model	missense	c.56	p.T19M	0.000	NULL	NULL	-	no_errors
SH2D7	0	genome.wustl.edu	36	15	76180473	76180473	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	15	76180473	76180473	T	A	SNP	SH2D7	NM_001101404	human	genbank	54_36p	+1	provisional	missense	c.823	p.S275T	0.027	NULL	HMMSmart_SH2,superfamily_SSF55550,HMMPfam_SH2	-	no_errors
RASGRF1	5923	genome.wustl.edu	36	15	77077591	77077591	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	15	77077591	77077591	G	C	SNP	RASGRF1	NM_002891	human	genbank	54_36p	-1	reviewed	missense	c.2916	p.N972K	0.217	superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMSmart_SM00229	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
BRWD3	254065	genome.wustl.edu	36	X	79833976	79833976	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	79833976	79833976	A	T	SNP	BRWD3	NM_153252	human	genbank	54_36p	-1	validated	splice_site	c.3481+2	e30+2	1.000	-	-	-	no_errors
PPFIA2	8499	genome.wustl.edu	36	12	80243700	80243700	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	80243700	80243700	T	A	SNP	PPFIA2	NM_003625	human	genbank	54_36p	-1	reviewed	nonsense	c.2629	p.R877*	0.998	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors
ACOT12	134526	genome.wustl.edu	36	5	80695399	80695399	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	80695399	80695399	G	A	SNP	ACOT12	NM_130767	human	genbank	54_36p	-1	validated	silent	c.324	p.F108	1.000	superfamily_Thioesterase/thiol ester dehydrase-isomerase	superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT,superfamily_Bet v1-like,HMMPfam_START	-	no_errors
HDX	139324	genome.wustl.edu	36	X	83610555	83610555	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	83610555	83610555	G	A	SNP	HDX	NM_144657	human	genbank	54_36p	-1	provisional	silent	c.832	p.L278	1.000	NULL	HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
WDR63	126820	genome.wustl.edu	36	1	85334223	85334223	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	85334223	85334223	G	A	SNP	WDR63	NM_145172	human	genbank	54_36p	+1	validated	missense	c.1195	p.D399N	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ENSG00000211623	0	genome.wustl.edu	36	2	89662590	89662590	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	89662590	89662590	G	T	SNP	ENSG00000211623	ENST00000390268	human	ensembl	54_36p	+1	known	missense	c.137	p.S46I	0.834	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_stop_codon:bad_bp_length_for_coding_region
TIGD2	166815	genome.wustl.edu	36	4	90254355	90254355	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	4	90254355	90254355	G	A	SNP	TIGD2	NM_145715	human	genbank	54_36p	+1	reviewed	missense	c.1207	p.G403R	1.000	NULL	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE	-	no_errors
LOC100132116	0	genome.wustl.edu	36	10	90684641	90684641	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	90684641	90684641	A	G	SNP	LOC100132116	XM_001724437	human	genbank	54_36p	+1	model	missense	c.376	p.S126G	0.001	NULL	NULL	-	no_errors
ALG2	85365	genome.wustl.edu	36	9	101020155	101020155	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	9	101020155	101020155	C	G	SNP	ALG2	NM_033087	human	genbank	54_36p	-1	reviewed	missense	c.1133	p.R378P	0.067	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_Glycos_transf_1	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_Glycos_transf_1	-	no_errors
C9orf30	91283	genome.wustl.edu	36	9	102252866	102252866	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	9	102252866	102252866	C	A	SNP	C9orf30	NM_080655	human	genbank	54_36p	+1	predicted	missense	c.625	p.Q209K	1.000	NULL	NULL	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	106665583	106665583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	106665583	106665583	C	T	SNP	SORCS3	NM_014978	human	genbank	54_36p	+1	reviewed	missense	c.698	p.S233L	1.000	superfamily_SSF110296,HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD	-	no_errors
SLC44A1	23446	genome.wustl.edu	36	9	107167671	107167671	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	9	107167671	107167671	C	G	SNP	SLC44A1	NM_080546	human	genbank	54_36p	+1	validated	missense	c.1340	p.S447C	1.000	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
TMEM119	338773	genome.wustl.edu	36	12	107510098	107510098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	107510098	107510098	G	A	SNP	TMEM119	NM_181724	human	genbank	54_36p	-1	validated	missense	c.191	p.P64L	0.998	NULL	NULL	-	no_errors
RANBP2	5903	genome.wustl.edu	36	2	108736359	108736359	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	108736359	108736359	G	C	SNP	RANBP2	NM_006267	human	genbank	54_36p	+1	reviewed	missense	c.1963	p.A655P	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
RGAG1	57529	genome.wustl.edu	36	X	109583200	109583200	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	109583200	109583200	C	A	SNP	RGAG1	NM_020769	human	genbank	54_36p	+1	provisional	missense	c.2699	p.P900Q	0.049	NULL	HMMPfam_Retrotrans_gag	-	no_errors
KCNC4	3749	genome.wustl.edu	36	1	110567907	110567907	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	110567907	110567907	A	G	SNP	KCNC4	NM_004978	human	genbank	54_36p	+1	reviewed	missense	c.1477	p.K493E	1.000	superfamily_Voltage-gated potassium channels	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
KCNV1	27012	genome.wustl.edu	36	8	111054028	111054028	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	111054028	111054028	G	A	SNP	KCNV1	NM_014379	human	genbank	54_36p	-1	reviewed	missense	c.626	p.A209V	1.000	superfamily_Voltage-gated potassium channels	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
XPNPEP1	7511	genome.wustl.edu	36	10	111615023	111615023	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	111615023	111615023	T	G	SNP	XPNPEP1	NM_020383	human	genbank	54_36p	-1	provisional	missense	c.1781	p.D594A	0.995	NULL	HMMPfam_Creatinase_N,superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE	-	no_errors
OAS3	4940	genome.wustl.edu	36	12	111868937	111868937	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	111868937	111868937	C	G	SNP	OAS3	NM_006187	human	genbank	54_36p	+1	reviewed	missense	c.643	p.L215V	0.001	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain	superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMPfam_NTP_transf_2	-	no_errors
APC	324	genome.wustl.edu	36	5	112202368	112202368	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	112202368	112202368	A	G	SNP	APC	NM_000038	human	genbank	54_36p	+1	reviewed	missense	c.3178	p.I1060V	1.000	NULL	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors
CDC16	8881	genome.wustl.edu	36	13	114029588	114029588	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	13	114029588	114029588	C	G	SNP	CDC16	NM_001078645	human	genbank	54_36p	+1	reviewed	missense	c.859	p.L287V	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
HABP2	3026	genome.wustl.edu	36	10	115333106	115333106	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	115333106	115333106	T	C	SNP	HABP2	NM_004132	human	genbank	54_36p	+1	reviewed	silent	c.1236	p.I412	0.966	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CXCR5	643	genome.wustl.edu	36	11	118270072	118270072	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	118270072	118270072	C	G	SNP	CXCR5	NM_032966	human	genbank	54_36p	+1	reviewed	silent	c.474	p.T158	0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
WDR3	10885	genome.wustl.edu	36	1	118285959	118285959	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	118285959	118285959	G	A	SNP	WDR3	NM_006784	human	genbank	54_36p	+1	reviewed	missense	c.955	p.D319N	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_Utp12	-	no_errors
ADAM30	11085	genome.wustl.edu	36	1	120239303	120239303	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	120239303	120239303	C	T	SNP	ADAM30	NM_021794	human	genbank	54_36p	-1	reviewed	missense	c.1180	p.G394R	0.373	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,PatternScan_EGF_2"	-	no_errors
CD80	941	genome.wustl.edu	36	3	120738761	120738761	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	3	120738761	120738761	C	A	SNP	CD80	NM_005191	human	genbank	54_36p	-1	validated	missense	c.613	p.D205Y	0.763	superfamily_Immunoglobulin,HMMPfam_C2-set_2	HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_V-set,HMMPfam_C2-set_2	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122943900	122943900	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	122943900	122943900	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	54_36p	+1	known	missense	c.8809	p.G2937R	1.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
KIAA1109	84162	genome.wustl.edu	36	4	123445403	123445403	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	4	123445403	123445403	G	C	SNP	KIAA1109	NM_015312	human	genbank	54_36p	+1	validated	missense	c.9487	p.G3163R	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
SEMA5B	54437	genome.wustl.edu	36	3	124123921	124123921	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	3	124123921	124123921	G	A	SNP	SEMA5B	NM_001031702	human	genbank	54_36p	-1	validated	nonsense	c.1336	p.Q446*	1.000	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
WDR40C	340578	genome.wustl.edu	36	X	125127268	125127268	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	125127268	125127268	G	A	SNP	WDR40C	NM_001013628	human	genbank	54_36p	-1	provisional	silent	c.321	p.N107	1.000	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
PLXNA4	91584	genome.wustl.edu	36	7	131561470	131561470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	7	131561470	131561470	C	T	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.1972	p.V658I	1.000	HMMPfam_PSI,HMMSmart_SM00423	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
EBF3	253738	genome.wustl.edu	36	10	131651251	131651251	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	10	131651251	131651251	G	T	SNP	EBF3	NM_001005463	human	genbank	54_36p	-1	validated	missense	c.300	p.N100K	1.000	NULL	PatternScan_COE,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors
OC90	729330	genome.wustl.edu	36	8	133123109	133123109	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	8	133123109	133123109	G	T	SNP	OC90	NM_001080399	human	genbank	54_36p	-1	validated	missense	c.141	p.F47L	1.000	NULL	HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2,HMMPfam_Phospholip_A2_1,PatternScan_PA2_HIS,PatternScan_PA2_ASP	-	no_errors
ANKRD34A	284615	genome.wustl.edu	36	1	144185390	144185390	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	144185390	144185390	A	G	SNP	ANKRD34A	NM_001039888	human	genbank	54_36p	+1	validated	silent	c.705	p.P235	0.825	NULL	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	-	no_errors
ZNF827	152485	genome.wustl.edu	36	4	147078987	147078987	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	4	147078987	147078987	T	C	SNP	ZNF827	NM_178835	human	genbank	54_36p	-1	validated	missense	c.23	p.Q8R	1.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PRPF3	9129	genome.wustl.edu	36	1	148583561	148583561	+	Silent	SNP	A	A	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	148583561	148583561	A	T	SNP	PRPF3	NM_004698	human	genbank	54_36p	+1	reviewed	silent	c.1554	p.R518	0.999	HMMPfam_PRP3	superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI,HMMPfam_PRP3	-	no_errors
PDE6A	5145	genome.wustl.edu	36	5	149225928	149225928	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	149225928	149225928	T	C	SNP	PDE6A	NM_000440	human	genbank	54_36p	-1	reviewed	missense	c.2356	p.K786E	1.000	superfamily_SSF109604,HMMPfam_PDEase_I	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PI4KB	5298	genome.wustl.edu	36	1	149555505	149555505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	149555505	149555505	C	T	SNP	PI4KB	NM_002651	human	genbank	54_36p	-1	provisional	missense	c.113	p.G38E	0.986	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
RPTN	126638	genome.wustl.edu	36	1	150395543	150395543	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	150395543	150395543	G	T	SNP	RPTN	ENST00000316073	human	ensembl	54_36p	-1	known	missense	c.656	p.A219D	0.000	NULL	superfamily_EF-hand,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150550370	150550370	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	150550370	150550370	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.3616	p.A1206T	0.001	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151491133	151491133	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	7	151491133	151491133	T	A	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.10462	p.I3488L	0.140	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
SYNE1	23345	genome.wustl.edu	36	6	152868068	152868068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	6	152868068	152868068	C	T	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.739	p.E247K	0.984	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
OR6N1	128372	genome.wustl.edu	36	1	157002983	157002983	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	157002983	157002983	A	G	SNP	OR6N1	NM_001005185	human	genbank	54_36p	-1	provisional	silent	c.114	p.T38	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
NR1I3	9970	genome.wustl.edu	36	1	159466340	159466340	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	159466340	159466340	C	A	SNP	NR1I3	NM_001077482	human	genbank	54_36p	-1	reviewed	silent	c.945	p.R315	1.000	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
HMMR	3161	genome.wustl.edu	36	5	162842858	162842858	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	162842858	162842858	T	A	SNP	HMMR	NM_012484	human	genbank	54_36p	+1	reviewed	silent	c.1689	p.A563	0.913	NULL	NULL	-	no_errors
SCN3A	6328	genome.wustl.edu	36	2	165692584	165692584	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	165692584	165692584	C	G	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	missense	c.3196	p.D1066H	1.000	HMMPfam_Na_trans_assoc	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
TTC21B	79809	genome.wustl.edu	36	2	166507974	166507974	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	166507974	166507974	C	A	SNP	TTC21B	NM_024753	human	genbank	54_36p	-1	validated	splice_site	c.552+1	e5+1	1.000	-	-	-	no_errors
DNM3	26052	genome.wustl.edu	36	1	170268980	170268980	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	170268980	170268980	T	G	SNP	DNM3	NM_015569	human	genbank	54_36p	+1	validated	missense	c.801	p.H267Q	1.000	superfamily_SSF52540,HMMPfam_Dynamin_M	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_GED,HMMSmart_GED	-	no_errors
GORASP2	26003	genome.wustl.edu	36	2	171519405	171519405	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	171519405	171519405	G	C	SNP	GORASP2	NM_015530	human	genbank	54_36p	+1	reviewed	splice_site	c.567-1	e6-1	1.000	-	-	-	no_errors
GPRIN1	114787	genome.wustl.edu	36	5	175959148	175959148	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	175959148	175959148	G	A	SNP	GPRIN1	NM_052899	human	genbank	54_36p	-1	validated	silent	c.294	p.C98	0.034	NULL	NULL	-	no_errors
TSPAN17	26262	genome.wustl.edu	36	5	176016486	176016486	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	176016486	176016486	G	A	SNP	TSPAN17	ENST00000298564	human	ensembl	54_36p	+1	known	silent	c.486	p.L162	0.139	NULL	HMMPfam_Tetraspannin	-	no_errors
NSD1	64324	genome.wustl.edu	36	5	176648424	176648424	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	176648424	176648424	A	C	SNP	NSD1	NM_022455	human	genbank	54_36p	+1	reviewed	splice_site	c.6152-2	e20-2	1.000	-	-	-	no_errors
DBN1	1627	genome.wustl.edu	36	5	176831752	176831752	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	176831752	176831752	G	A	SNP	DBN1	NM_080881	human	genbank	54_36p	-1	reviewed	silent	c.66	p.R22	0.797	HMMSmart_ADF,HMMPfam_Cofilin_ADF	HMMSmart_ADF,HMMPfam_Cofilin_ADF,superfamily_SSF55753	-	no_errors
COL23A1	91522	genome.wustl.edu	36	5	177614610	177614610	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	5	177614610	177614610	C	A	SNP	COL23A1	NM_173465	human	genbank	54_36p	-1	validated	missense	c.906	p.E302D	0.997	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
NR5A2	2494	genome.wustl.edu	36	1	198284074	198284074	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	198284074	198284074	T	C	SNP	NR5A2	NM_205860	human	genbank	54_36p	+1	validated	silent	c.615	p.S205	0.962	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
KIF21B	23046	genome.wustl.edu	36	1	199216743	199216743	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	199216743	199216743	G	A	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	missense	c.3908	p.A1303V	1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
SATB2	23314	genome.wustl.edu	36	2	199845564	199845564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	199845564	199845564	G	A	SNP	SATB2	NM_015265	human	genbank	54_36p	-1	validated	missense	c.1817	p.P606L	0.942	NULL	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
AOX1	316	genome.wustl.edu	36	2	201200367	201200367	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	201200367	201200367	A	T	SNP	AOX1	NM_001159	human	genbank	54_36p	+1	reviewed	missense	c.2171	p.E724V	0.998	superfamily_Molybdenum cofactor-binding domain,HMMPfam_Ald_Xan_dh_C2	superfamily_2Fe-2S ferredoxin-like,HMMPfam_Fer2,PatternScan_2FE2S_FER_1,HMMPfam_Fer2_2,superfamily_CO dehydrogenase ISP C-domain like,superfamily_FAD-binding domain,HMMPfam_FAD_binding_5,superfamily_CO dehydrogenase flavoprotein C-terminal domain-like,HMMPfam_CO_deh_flav_C,superfamily_CO dehydrogenase molybdoprotein N-domain-like,HMMPfam_Ald_Xan_dh_C,superfamily_Molybdenum cofactor-binding domain,HMMPfam_Ald_Xan_dh_C2,PatternScan_MOLYBDOPTERIN_EUK	-	no_errors
CYP20A1	57404	genome.wustl.edu	36	2	203812052	203812052	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	203812052	203812052	G	T	SNP	CYP20A1	NM_177538	human	genbank	54_36p	+1	reviewed	missense	c.22	p.A8S	1.000	NULL	superfamily_Cytochrome_P450,HMMPfam_p450	-	no_errors
FCAMR	83953	genome.wustl.edu	36	1	205199661	205199661	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	205199661	205199661	C	A	SNP	FCAMR	ENST00000400962	human	ensembl	54_36p	-1	known	nonsense	c.757	p.G253*	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
LOC643454	643454	genome.wustl.edu	36	1	212722979	212722979	+	RNA	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	212722979	212722979	C	G	SNP	LOC643454	XR_042294	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
USP37	57695	genome.wustl.edu	36	2	219027910	219027910	+	Missense_Mutation	SNP	C	C	T	rs61752208	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	219027910	219027910	C	T	SNP	USP37	NM_020935	human	genbank	54_36p	-1	validated	missense	c.2927	p.R976H	0.004	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,HMMSmart_SM00726,HMMPfam_UIM,PatternScan_UCH_2_2	-	no_errors
DOCK10	55619	genome.wustl.edu	36	2	225343266	225343266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	225343266	225343266	C	T	SNP	DOCK10	NM_014689	human	genbank	54_36p	-1	validated	missense	c.6350	p.R2117H	1.000	HMMPfam_Ded_cyto	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors
GNPAT	8443	genome.wustl.edu	36	1	229468521	229468521	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	229468521	229468521	A	T	SNP	GNPAT	NM_014236	human	genbank	54_36p	+1	reviewed	missense	c.911	p.K304I	1.000	superfamily_SSF69593	HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC	-	no_errors
SIPA1L2	57568	genome.wustl.edu	36	1	230643701	230643701	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	230643701	230643701	T	C	SNP	SIPA1L2	NM_020808	human	genbank	54_36p	-1	validated	missense	c.3601	p.K1201E	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
USP40	55230	genome.wustl.edu	36	2	234097915	234097915	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	234097915	234097915	C	A	SNP	USP40	NM_018218	human	genbank	54_36p	-1	validated	missense	c.1635	p.L545F	0.017	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
HEATR1	55127	genome.wustl.edu	36	1	234816167	234816167	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	234816167	234816167	C	G	SNP	HEATR1	NM_018072	human	genbank	54_36p	-1	validated	missense	c.1924	p.E642Q	1.000	NULL	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	-	no_errors
LOC643905	643905	genome.wustl.edu	36	2	240630799	240630799	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	2	240630799	240630799	G	T	SNP	LOC643905	NM_001080835	human	genbank	54_36p	-1	predicted	missense	c.274	p.L92I	0.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518324	7518325	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	7518324	7518325	-	A	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.682_681	p.D227fs	0.998:0.801	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
KCNJ11	3767	genome.wustl.edu	36	11	17365565	17365565	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	11	17365565	17365565	A	-	DEL	KCNJ11	NM_000525	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.650	p.M217fs	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set	(deletion:cds_exon[17365042,17366214])	no_errors
KRT13	3860	genome.wustl.edu	36	17	36912825	36912851	+	In_Frame_Del	DEL	CCATCTCCACGTTGACCTGGCCGACCA	CCATCTCCACGTTGACCTGGCCGACCA	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	CCATCTCCACGTTGACCTGGCCGACCA	CCATCTCCACGTTGACCTGGCCGACCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	17	36912825	36912851	CCATCTCCACGTTGACCTGGCCGACCA	-	DEL	KRT13	NM_153490	human	genbank	54_36p	-1	reviewed	in_frame_del	c.787_761	p.VVGQVNVEM254in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.968:0.969:0.918:0.932:0.993:0.988:0.002:0.003:0.026:0.020:0.022	HMMPfam_Filament,superfamily_Prefoldin	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	(deletion:cds_exon[36912715,36912876])	no_errors
SHROOM4	57477	genome.wustl.edu	36	X	50367848	50367878	+	Frame_Shift_Del	DEL	AGTCCAGTGCTGGGTTCTCAAGGCAAGGATG	AGTCCAGTGCTGGGTTCTCAAGGCAAGGATG	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	AGTCCAGTGCTGGGTTCTCAAGGCAAGGATG	AGTCCAGTGCTGGGTTCTCAAGGCAAGGATG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	50367848	50367878	AGTCCAGTGCTGGGTTCTCAAGGCAAGGATG	-	DEL	SHROOM4	NM_020717	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3034_3004	p.H1002fs	0.998:0.988:0.989:0.986:0.978:0.981:0.995:0.993:0.994:0.998:0.998:0.999:0.997:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.953:0.935:0.929:0.924:0.913:0.854:0.864:0.798:0.746:0.827:0.886	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	(deletion:cds_exon[50367121,50367924])	no_errors
PHF8	23133	genome.wustl.edu	36	X	54059895	54059914	+	Splice_Site	DEL	CTGGAGTAAAGAGATAGGTT	CTGGAGTAAAGAGATAGGTT	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	CTGGAGTAAAGAGATAGGTT	CTGGAGTAAAGAGATAGGTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	X	54059895	54059914	CTGGAGTAAAGAGATAGGTT	-	DEL	PHF8	NM_015107	human	genbank	54_36p	-1	validated	splice_site_del	c.455-20_455-1	e5-1	1.000:0.999:0.888:0.005:0.002:0.000:0.001:0.051:0.037:0.032:0.005:0.000:0.001:0.005:0.002:0.000:0.000:0.001:0.001:0.003	-	-	(deletion:intron[54059895,54060818])	no_errors
TSNAXIP1	55815	genome.wustl.edu	36	16	66415030	66415055	+	Frame_Shift_Del	DEL	CCTTACAGAGAGATCTTTGAGTTCTT	CCTTACAGAGAGATCTTTGAGTTCTT	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	CCTTACAGAGAGATCTTTGAGTTCTT	CCTTACAGAGAGATCTTTGAGTTCTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	16	66415030	66415055	CCTTACAGAGAGATCTTTGAGTTCTT	-	DEL	TSNAXIP1	NM_018430	human	genbank	54_36p	+1	validated	frame_shift_del	c.226_251	p.P76fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[66415030,66415123])	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124400307	124400323	+	Frame_Shift_Del	DEL	CAGACCTTGTTTTATGT	CAGACCTTGTTTTATGT	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	CAGACCTTGTTTTATGT	CAGACCTTGTTTTATGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	12	124400307	124400323	CAGACCTTGTTTTATGT	-	DEL	TMEM132B	NM_052907	human	genbank	54_36p	+1	provisional	frame_shift_del	c.409_425	p.Q137fs	1.000:1.000:1.000:0.998:0.974:0.027:0.079:0.991:1.000:1.000:1.000:0.976:0.995:0.990:0.153:0.089:0.113	NULL	NULL	(deletion:cds_exon[124399951,124400842])	no_errors
ITGA10	8515	genome.wustl.edu	36	1	144242341	144242341	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	144242341	144242341	A	-	DEL	ITGA10	NM_003637	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.716	p.E239fs	1.000	superfamily_Integrin alpha N-terminal domain,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	(deletion:cds_exon[144242235,144242383])	no_errors
IL10	3586	genome.wustl.edu	36	1	205008666	205008699	+	Frame_Shift_Del	DEL	TCATGGCTTTGTAGATGCCTTTCTCTTGGAGCTG	TCATGGCTTTGTAGATGCCTTTCTCTTGGAGCTG	-	novel	unknown	TCGA-29-1691-01A-01W-0633-09	TCGA-29-1691-10A-01W-0633-09	TCATGGCTTTGTAGATGCCTTTCTCTTGGAGCTG	TCATGGCTTTGTAGATGCCTTTCTCTTGGAGCTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65926e04-6720-4ac9-a5dd-06b0109b4d8d	a2bf02d4-c423-47a0-bd6b-7aef7bf12c88	1	205008666	205008699	TCATGGCTTTGTAGATGCCTTTCTCTTGGAGCTG	-	DEL	IL10	NM_000572	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.475_445	p.L149fs	1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.998:0.994:0.941:0.905:0.994:1.000:1.000:1.000:0.998:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_IL10,superfamily_4-helical cytokines,HMMSmart_SM00188	HMMPfam_IL10,superfamily_4-helical cytokines,HMMSmart_SM00188,PatternScan_INTERLEUKIN_10	(deletion:cds_exon[205008604,205008696], intron[205008697,205009796])	no_errors
