Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ATP6	4508	genome.wustl.edu	36	MT	9190	9190	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	MT	9190	9190	C	T	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	silent	c.663	p.Y221	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	-	no_errors
DEFB127	140850	genome.wustl.edu	36	20	86225	86225	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	20	86225	86225	A	G	SNP	DEFB127	NM_139074	human	genbank	54_36p	+1	reviewed	missense	c.40	p.K14E	0.642	NULL	NULL	-	no_errors
LOC644670	644670	genome.wustl.edu	36	X	147451	147451	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	X	147451	147451	C	T	SNP	LOC644670	XM_497182	human	genbank	54_36p	+1	model	missense	c.1856	p.P619L	0.033	NULL	superfamily_PLC-like phosphodiesterases	-	no_start_codon:pseudogene:no_stop_codon
TBC1D24	57465	genome.wustl.edu	36	16	2486400	2486400	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	16	2486400	2486400	A	G	SNP	TBC1D24	NM_020705	human	genbank	54_36p	+1	provisional	missense	c.250	p.K84E	1.000	HMMSmart_TBC,HMMPfam_TBC	HMMSmart_TBC,HMMPfam_TBC,superfamily_RabGAP_TBC,HMMSmart_TLDc,HMMPfam_TLD	-	no_errors
LOC653657	653657	genome.wustl.edu	36	19	7007571	7007571	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	7007571	7007571	G	T	SNP	LOC653657	XM_928697	human	genbank	54_36p	-1	model	missense	c.389	p.A130D	0.000	NULL	NULL	-	no_errors
PTPRD	5789	genome.wustl.edu	36	9	8474340	8474340	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	9	8474340	8474340	A	G	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	silent	c.3192	p.D1064	1.000	HMMSmart_SM00060,superfamily_Fibronectin type III	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
P2RY11	5032	genome.wustl.edu	36	19	10086228	10086228	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	10086228	10086228	C	T	SNP	P2RY11	NM_002566	human	genbank	54_36p	+1	reviewed	silent	c.939	p.A313	0.971	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZNF653	115950	genome.wustl.edu	36	19	11470109	11470109	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	11470109	11470109	A	G	SNP	ZNF653	NM_138783	human	genbank	54_36p	-1	provisional	splice_site	c.343+2	e2+2	1.000	-	-	-	no_errors
HIVEP1	3096	genome.wustl.edu	36	6	12232064	12232064	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	6	12232064	12232064	C	T	SNP	HIVEP1	NM_002114	human	genbank	54_36p	+1	validated	silent	c.4050	p.G1350	0.001	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
OPTN	10133	genome.wustl.edu	36	10	13191189	13191189	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	10	13191189	13191189	G	C	SNP	OPTN	NM_001008211	human	genbank	54_36p	+1	reviewed	missense	c.61	p.G21R	0.997	NULL	NULL	-	no_errors
OR7A17	26333	genome.wustl.edu	36	19	14852670	14852670	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	14852670	14852670	C	G	SNP	OR7A17	NM_030901	human	genbank	54_36p	-1	provisional	silent	c.498	p.L166	0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CCT8L2	150160	genome.wustl.edu	36	22	15452827	15452827	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	22	15452827	15452827	A	T	SNP	CCT8L2	NM_014406	human	genbank	54_36p	-1	validated	missense	c.614	p.V205E	0.016	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-	no_errors
PTPRO	5800	genome.wustl.edu	36	12	15545987	15545987	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	12	15545987	15545987	G	A	SNP	PTPRO	NM_030667	human	genbank	54_36p	+1	reviewed	silent	c.828	p.S276	0.119	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
XKR3	150165	genome.wustl.edu	36	22	15660702	15660702	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	22	15660702	15660702	A	G	SNP	XKR3	NM_175878	human	genbank	54_36p	-1	validated	missense	c.548	p.M183T	0.998	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors
NOMO3	408050	genome.wustl.edu	36	16	16253370	16253370	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	16	16253370	16253370	A	T	SNP	NOMO3	NM_001004067	human	genbank	54_36p	+1	reviewed	missense	c.785	p.D262V	1.000	superfamily_Carboxypeptidase regulatory domain	superfamily_Starch-binding domain-like,HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain	-	no_errors
FAM134B	54463	genome.wustl.edu	36	5	16625166	16625166	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	5	16625166	16625166	G	A	SNP	FAM134B	NM_001034850	human	genbank	54_36p	-1	validated	silent	c.366	p.V122	0.983	NULL	NULL	-	no_errors
OVOL2	58495	genome.wustl.edu	36	20	17970360	17970360	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	20	17970360	17970360	G	C	SNP	OVOL2	NM_021220	human	genbank	54_36p	-1	validated	missense	c.329	p.T110R	0.998	NULL	superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
UBA52	7311	genome.wustl.edu	36	19	18545529	18545529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	18545529	18545529	G	A	SNP	UBA52	NM_001033930	human	genbank	54_36p	+1	reviewed	missense	c.161	p.R54H	1.000	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1,HMMPfam_Ribosomal_L40e	-	no_errors
ASXL2	55252	genome.wustl.edu	36	2	25843954	25843954	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	2	25843954	25843954	A	T	SNP	ASXL2	NM_018263	human	genbank	54_36p	-1	validated	splice_site	c.775+2	e8+2	1.000	-	-	-	no_errors
LRRC3B	116135	genome.wustl.edu	36	3	26726806	26726806	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	26726806	26726806	G	C	SNP	LRRC3B	NM_052953	human	genbank	54_36p	+1	provisional	missense	c.639	p.W213C	1.000	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors
ADAMTS1	9510	genome.wustl.edu	36	21	27134548	27134548	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	21	27134548	27134548	C	G	SNP	ADAMTS1	NM_006988	human	genbank	54_36p	-1	reviewed	missense	c.1583	p.W528S	1.000	HMMSmart_ACR	PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	-	no_errors
PTK2B	2185	genome.wustl.edu	36	8	27333386	27333386	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	8	27333386	27333386	G	C	SNP	PTK2B	NM_004103	human	genbank	54_36p	+1	reviewed	missense	c.262	p.E88Q	1.000	HMMSmart_SM00295	HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase	-	no_errors
LOC730909	730909	genome.wustl.edu	36	15	28912314	28912314	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	15	28912314	28912314	C	A	SNP	LOC730909	XM_001718721	human	genbank	54_36p	+1	model	missense	c.201	p.D67E	0.997	NULL	NULL	-	no_errors
GAL3ST1	9514	genome.wustl.edu	36	22	29281341	29281341	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	22	29281341	29281341	C	A	SNP	GAL3ST1	NM_004861	human	genbank	54_36p	-1	reviewed	missense	c.871	p.G291W	0.098	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
SLC44A4	80736	genome.wustl.edu	36	6	31944925	31944925	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	6	31944925	31944925	A	C	SNP	SLC44A4	NM_025257	human	genbank	54_36p	-1	validated	missense	c.1219	p.S407A	0.000	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
ADAMTS12	81792	genome.wustl.edu	36	5	33679334	33679334	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	5	33679334	33679334	T	C	SNP	ADAMTS12	NM_030955	human	genbank	54_36p	-1	reviewed	splice_site	c.1480-2	e10-2	1.000	-	-	-	no_errors
PIK3C3	5289	genome.wustl.edu	36	18	37891941	37891941	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	18	37891941	37891941	T	C	SNP	PIK3C3	NM_002647	human	genbank	54_36p	+1	validated	missense	c.2360	p.M787T	1.000	superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
EPHA10	284656	genome.wustl.edu	36	1	37958300	37958300	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	37958300	37958300	C	T	SNP	EPHA10	NM_001099439	human	genbank	54_36p	-1	validated	silent	c.2430	p.A810	0.726	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
GUCA1B	2979	genome.wustl.edu	36	6	42264375	42264375	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	6	42264375	42264375	G	T	SNP	GUCA1B	NM_002098	human	genbank	54_36p	-1	validated	missense	c.280	p.L94M	1.000	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
KBTBD5	131377	genome.wustl.edu	36	3	42702994	42702994	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	42702994	42702994	G	T	SNP	KBTBD5	NM_152393	human	genbank	54_36p	+1	validated	nonsense	c.880	p.E294*	0.605	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
RSPH1	89765	genome.wustl.edu	36	21	42785950	42785950	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	21	42785950	42785950	T	G	SNP	RSPH1	NM_080860	human	genbank	54_36p	-1	validated	silent	c.261	p.G87	0.995	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMPfam_MORN	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698	-	no_errors
MYO5B	4645	genome.wustl.edu	36	18	45644735	45644735	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	18	45644735	45644735	T	G	SNP	MYO5B	NM_001080467	human	genbank	54_36p	-1	provisional	missense	c.3617	p.E1206A	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors
SLC12A1	6557	genome.wustl.edu	36	15	46326427	46326427	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	15	46326427	46326427	C	T	SNP	SLC12A1	NM_000338	human	genbank	54_36p	+1	validated	silent	c.1482	p.P494	0.997	HMMPfam_AA_permease	HMMPfam_AA_permease_N,HMMPfam_AA_permease	-	no_errors
COL2A1	1280	genome.wustl.edu	36	12	46665970	46665970	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	12	46665970	46665970	C	G	SNP	COL2A1	NM_001844	human	genbank	54_36p	-1	reviewed	missense	c.1573	p.G525R	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
SMARCC1	6599	genome.wustl.edu	36	3	47677866	47677866	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	47677866	47677866	A	G	SNP	SMARCC1	NM_003074	human	genbank	54_36p	-1	validated	missense	c.2242	p.S748P	0.998	NULL	superfamily_BRCT,HMMSmart_CHROMO,HMMPfam_SWIRM,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
ZNF630	57232	genome.wustl.edu	36	X	47803410	47803410	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	X	47803410	47803410	T	C	SNP	ZNF630	NM_001037735	human	genbank	54_36p	-1	validated	silent	c.993	p.G331	0.998	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TYRL	0	genome.wustl.edu	36	11	49393877	49393877	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	11	49393877	49393877	A	G	SNP	TYRL	ENST00000243152	human	ensembl	54_36p	-1	known	missense	c.5	p.F2S	1.000	superfamily_Di-copper_centre	superfamily_Di-copper_centre	-	no_start_codon
GRASP	160622	genome.wustl.edu	36	12	50690959	50690959	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	12	50690959	50690959	T	A	SNP	GRASP	NM_181711	human	genbank	54_36p	+1	provisional	missense	c.324	p.D108E	0.875	superfamily_PDZ domain-like,HMMPfam_PDZ	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
WDFY2	115825	genome.wustl.edu	36	13	51228521	51228521	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	13	51228521	51228521	G	A	SNP	WDFY2	NM_052950	human	genbank	54_36p	+1	reviewed	missense	c.986	p.R329H	1.000	superfamily_WD40 repeat-like,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE	-	no_errors
MC3R	4159	genome.wustl.edu	36	20	54257692	54257692	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	20	54257692	54257692	T	A	SNP	MC3R	NM_019888	human	genbank	54_36p	+1	reviewed	missense	c.497	p.V166E	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
NUP62	23636	genome.wustl.edu	36	19	55103505	55103505	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	55103505	55103505	G	C	SNP	NUP62	NM_012346	human	genbank	54_36p	-1	reviewed	missense	c.1372	p.L458V	1.000	NULL	HMMPfam_Nsp1_C	-	no_errors
DST	667	genome.wustl.edu	36	6	56589978	56589978	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	6	56589978	56589978	G	T	SNP	DST	NM_001723	human	genbank	54_36p	-1	reviewed	silent	c.6246	p.V2082	0.000	NULL	HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin	-	no_errors
KIAA1211	57482	genome.wustl.edu	36	4	56876453	56876453	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	4	56876453	56876453	G	C	SNP	KIAA1211	NM_020722	human	genbank	54_36p	+1	validated	silent	c.2028	p.L676	0.920	NULL	NULL	-	no_errors
LOC389662	389662	genome.wustl.edu	36	8	57553113	57553113	+	RNA	SNP	C	T	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	8	57553113	57553113	C	T	SNP	LOC389662	XR_016813	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.006	-	-	-	pseudogene
ZNF528	84436	genome.wustl.edu	36	19	57610285	57610285	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	57610285	57610285	T	G	SNP	ZNF528	NM_032423	human	genbank	54_36p	+1	validated	missense	c.368	p.F123C	0.013	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZBTB46	140685	genome.wustl.edu	36	20	61892450	61892450	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	20	61892450	61892450	C	A	SNP	ZBTB46	NM_025224	human	genbank	54_36p	-1	provisional	silent	c.105	p.V35	0.713	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NOL11	25926	genome.wustl.edu	36	17	63164742	63164742	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	17	63164742	63164742	G	A	SNP	NOL11	NM_015462	human	genbank	54_36p	+1	provisional	silent	c.1572	p.E524	0.997	NULL	HMMPfam_NUC205	-	no_errors
EGR2	1959	genome.wustl.edu	36	10	64245690	64245690	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	10	64245690	64245690	C	A	SNP	EGR2	NM_000399	human	genbank	54_36p	-1	reviewed	missense	c.106	p.V36L	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TSGA10IP	254187	genome.wustl.edu	36	11	65471533	65471533	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	11	65471533	65471533	G	C	SNP	TSGA10IP	NM_152762	human	genbank	54_36p	+1	validated	missense	c.661	p.G221R	0.003	NULL	NULL	-	pseudogene
TSEN54	283989	genome.wustl.edu	36	17	71029174	71029174	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	17	71029174	71029174	G	C	SNP	TSEN54	NM_207346	human	genbank	54_36p	+1	validated	missense	c.611	p.S204T	0.971	NULL	NULL	-	no_errors
ZNF638	27332	genome.wustl.edu	36	2	71430860	71430860	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	2	71430860	71430860	T	A	SNP	ZNF638	NM_001014972	human	genbank	54_36p	+1	reviewed	missense	c.1268	p.I423K	1.000	HMMSmart_SM00451	HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
MAP1B	4131	genome.wustl.edu	36	5	71528850	71528850	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	5	71528850	71528850	A	T	SNP	MAP1B	NM_005909	human	genbank	54_36p	+1	validated	missense	c.3912	p.E1304D	0.974	NULL	HMMPfam_MAP1B_neuraxin,PatternScan_MAP1B_NEURAXIN	-	no_errors
ENSG00000179994	0	genome.wustl.edu	36	7	71972798	71972798	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	7	71972798	71972798	G	A	SNP	ENSG00000179994	ENST00000355920	human	ensembl	54_36p	-1	known	silent	c.354	p.D118	0.000	NULL	NULL	-	no_errors
RHBDF2	79651	genome.wustl.edu	36	17	71980462	71980462	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	17	71980462	71980462	C	T	SNP	RHBDF2	NM_024599	human	genbank	54_36p	-1	validated	silent	c.2052	p.L684	1.000	HMMPfam_Rhomboid	HMMPfam_Rhomboid	-	no_errors
CLEC18B	0	genome.wustl.edu	36	16	73009462	73009462	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	16	73009462	73009462	G	A	SNP	CLEC18B	NM_001011880	human	genbank	54_36p	-1	validated	missense	c.452	p.T151M	0.996	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
C14orf43	91748	genome.wustl.edu	36	14	73275850	73275850	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	14	73275850	73275850	C	G	SNP	C14orf43	NM_001043318	human	genbank	54_36p	-1	validated	missense	c.615	p.K205N	0.999	NULL	HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
TBC1D2B	23102	genome.wustl.edu	36	15	76092487	76092487	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	15	76092487	76092487	C	T	SNP	TBC1D2B	NM_015079	human	genbank	54_36p	-1	validated	missense	c.1625	p.R542H	1.000	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
PPEF2	5470	genome.wustl.edu	36	4	77023215	77023215	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	4	77023215	77023215	A	G	SNP	PPEF2	NM_006239	human	genbank	54_36p	-1	reviewed	missense	c.821	p.V274A	1.000	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos	HMMPfam_IQ,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE,HMMSmart_SM00054,superfamily_EF-hand,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
SYTL2	54843	genome.wustl.edu	36	11	85112895	85112895	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	11	85112895	85112895	G	A	SNP	SYTL2	NM_206927	human	genbank	54_36p	-1	reviewed	silent	c.2253	p.P751	0.239	NULL	PatternScan_PHOSPHOPANTETHEINE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
DMTF1	9988	genome.wustl.edu	36	7	86661133	86661133	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	7	86661133	86661133	C	A	SNP	DMTF1	NM_021145	human	genbank	54_36p	+1	reviewed	missense	c.1807	p.P603T	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors
CNR1	1268	genome.wustl.edu	36	6	88910669	88910669	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	6	88910669	88910669	G	A	SNP	CNR1	NM_016083	human	genbank	54_36p	-1	reviewed	silent	c.1044	p.I348	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ENSG00000211617	0	genome.wustl.edu	36	2	89378240	89378240	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	2	89378240	89378240	G	A	SNP	ENSG00000211617	ENST00000390262	human	ensembl	54_36p	-1	known	missense	c.247	p.R83W	0.157	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_stop_codon:bad_bp_length_for_coding_region
ZNF644	84146	genome.wustl.edu	36	1	91177487	91177487	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	91177487	91177487	G	C	SNP	ZNF644	NM_201269	human	genbank	54_36p	-1	validated	nonsense	c.2012	p.S671*	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CNN3	1266	genome.wustl.edu	36	1	95135950	95135950	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	95135950	95135950	T	C	SNP	CNN3	NM_001839	human	genbank	54_36p	-1	validated	missense	c.926	p.H309R	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,PatternScan_CALPONIN_1,HMMPfam_Calponin	-	no_errors
C10orf12	26148	genome.wustl.edu	36	10	98731347	98731347	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	10	98731347	98731347	T	C	SNP	C10orf12	NM_015652	human	genbank	54_36p	+1	predicted	silent	c.210	p.D70	0.932	NULL	NULL	-	no_errors
NXF2	56001	genome.wustl.edu	36	X	101459060	101459060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	X	101459060	101459060	C	T	SNP	NXF2	NM_017809	human	genbank	54_36p	+1	reviewed	missense	c.302	p.T101M	0.000	NULL	superfamily_SSF54928,HMMPfam_Tap-RNA_bind,superfamily_SSF52058,superfamily_SSF54427,HMMPfam_NTF2,superfamily_UBA_like,HMMSmart_TAP_C,HMMPfam_TAP_C	-	no_errors
RAGE	5891	genome.wustl.edu	36	14	101786996	101786996	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	14	101786996	101786996	A	T	SNP	RAGE	NM_014226	human	genbank	54_36p	-1	provisional	missense	c.496	p.W166R	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102047164	102047164	+	Silent	SNP	G	T	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	10	102047164	102047164	G	T	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	silent	c.921	p.V307	0.998	HMMPfam_PKD_channel	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	-	no_errors
RINT1	60561	genome.wustl.edu	36	7	104964250	104964250	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	7	104964250	104964250	G	C	SNP	RINT1	NM_021930	human	genbank	54_36p	+1	validated	missense	c.91	p.D31H	0.777	NULL	HMMPfam_RINT1_TIP1	-	no_errors
ATM	472	genome.wustl.edu	36	11	107626753	107626753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	11	107626753	107626753	C	T	SNP	ATM	NM_000051	human	genbank	54_36p	+1	reviewed	missense	c.1351	p.R451C	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
STXBP3	6814	genome.wustl.edu	36	1	109102726	109102726	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	109102726	109102726	C	T	SNP	STXBP3	NM_007269	human	genbank	54_36p	+1	validated	silent	c.330	p.F110	1.000	superfamily_Sec1-like,HMMPfam_Sec1	superfamily_Sec1-like,HMMPfam_Sec1	-	no_errors
PAK3	5063	genome.wustl.edu	36	X	110253006	110253006	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	X	110253006	110253006	A	G	SNP	PAK3	NM_002578	human	genbank	54_36p	+1	reviewed	missense	c.19	p.N7D	1.000	NULL	HMMPfam_PBD,HMMSmart_SM00285,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
RASAL1	8437	genome.wustl.edu	36	12	112041368	112041368	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	12	112041368	112041368	C	T	SNP	RASAL1	NM_004658	human	genbank	54_36p	-1	reviewed	missense	c.590	p.R197Q	0.978	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00107,HMMPfam_BTK	-	no_errors
HSPB8	26353	genome.wustl.edu	36	12	118101552	118101552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	12	118101552	118101552	C	G	SNP	HSPB8	NM_014365	human	genbank	54_36p	+1	reviewed	missense	c.52	p.R18G	0.998	NULL	superfamily_HSP20-like chaperones,HMMPfam_HSP20	-	no_errors
DMXL1	1657	genome.wustl.edu	36	5	118541036	118541036	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	5	118541036	118541036	G	C	SNP	DMXL1	NM_005509	human	genbank	54_36p	+1	validated	missense	c.6844	p.D2282H	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_SUBTILASE_ASP,PatternScan_WD_REPEATS_1	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122838398	122838398	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	12	122838398	122838398	G	C	SNP	DNAH10	NM_207437	human	genbank	54_36p	+1	validated	missense	c.787	p.E263Q	1.000	HMMPfam_DHC_N1	HMMPfam_DHC_N1	-	no_errors
UROC1	131669	genome.wustl.edu	36	3	127702812	127702812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	127702812	127702812	C	T	SNP	UROC1	NM_144639	human	genbank	54_36p	-1	provisional	missense	c.904	p.E302K	1.000	superfamily_Urocanase,HMMPfam_Urocanase	superfamily_Urocanase,HMMPfam_Urocanase,PatternScan_UROCANASE	-	no_errors
FLNC	2318	genome.wustl.edu	36	7	128265285	128265285	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	7	128265285	128265285	G	C	SNP	FLNC	NM_001458	human	genbank	54_36p	+1	reviewed	silent	c.978	p.V326	0.998	superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors
LRRC6	23639	genome.wustl.edu	36	8	133714298	133714298	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	8	133714298	133714298	C	G	SNP	LRRC6	NM_012472	human	genbank	54_36p	-1	provisional	missense	c.523	p.D175H	1.000	NULL	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00446,HMMPfam_CS	-	no_errors
UTRN	7402	genome.wustl.edu	36	6	144837494	144837494	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	6	144837494	144837494	C	A	SNP	UTRN	NM_007124	human	genbank	54_36p	+1	reviewed	missense	c.3242	p.T1081N	0.032	HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
EDNRA	1909	genome.wustl.edu	36	4	148626405	148626405	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	4	148626405	148626405	G	A	SNP	EDNRA	NM_001957	human	genbank	54_36p	+1	validated	missense	c.122	p.R41H	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SMARCD3	6604	genome.wustl.edu	36	7	150568500	150568500	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	7	150568500	150568500	C	A	SNP	SMARCD3	NM_001003801	human	genbank	54_36p	-1	reviewed	missense	c.981	p.Q327H	1.000	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151	-	no_errors
EIF2A	83939	genome.wustl.edu	36	3	151772791	151772791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	151772791	151772791	T	C	SNP	EIF2A	NM_032025	human	genbank	54_36p	+1	validated	missense	c.1168	p.W390R	1.000	HMMPfam_eIF2A	superfamily_WD40 repeat-like,HMMPfam_eIF2A	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156880802	156880802	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	156880802	156880802	C	T	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	silent	c.4203	p.Q1401	0.986	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	158026926	158026926	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	7	158026926	158026926	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	54_36p	-1	known	missense	c.146	p.T49M	0.036	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_start_codon
IGSF9	57549	genome.wustl.edu	36	1	158170841	158170841	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	158170841	158170841	A	G	SNP	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	missense	c.959	p.L320P	1.000	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
ENSG00000215841	0	genome.wustl.edu	36	1	159475788	159475788	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	159475788	159475788	G	A	SNP	ENSG00000215841	ENST00000400985	human	ensembl	54_36p	-1	known	missense	c.35	p.A12V	0.000	NULL	NULL	-	no_start_codon:no_stop_codon
HSPA6	3310	genome.wustl.edu	36	1	159761545	159761545	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	159761545	159761545	A	G	SNP	HSPA6	NM_002155	human	genbank	54_36p	+1	validated	missense	c.473	p.Q158R	1.000	superfamily_Actin-like ATPase domain,HMMPfam_HSP70	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	-	no_errors
ETFDH	2110	genome.wustl.edu	36	4	159847395	159847395	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	4	159847395	159847395	C	A	SNP	ETFDH	NM_004453	human	genbank	54_36p	+1	reviewed	missense	c.1633	p.P545T	0.995	HMMPfam_ETF_QO	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,HMMPfam_ETF_QO	-	no_errors
EVI1	2122	genome.wustl.edu	36	3	170295602	170295602	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	170295602	170295602	T	C	SNP	EVI1	NM_001105077	human	genbank	54_36p	-1	validated	missense	c.2603	p.N868S	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PLD1	5337	genome.wustl.edu	36	3	172910088	172910088	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	172910088	172910088	T	A	SNP	PLD1	NM_002662	human	genbank	54_36p	-1	validated	silent	c.1017	p.R339	0.996	superfamily_Phospholipase D/nuclease	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155	-	no_errors
LOC100130511	0	genome.wustl.edu	36	1	178671653	178671653	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	178671653	178671653	C	A	SNP	LOC100130511	XR_038100	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TRIM7	81786	genome.wustl.edu	36	5	180559726	180559726	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	5	180559726	180559726	G	A	SNP	TRIM7	NM_203297	human	genbank	54_36p	-1	reviewed	missense	c.34	p.H12Y	0.000	NULL	HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184402638	184402638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	184402638	184402638	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	missense	c.15515	p.R5172H	1.000	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors
YEATS2	55689	genome.wustl.edu	36	3	184957133	184957133	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	184957133	184957133	A	C	SNP	YEATS2	NM_018023	human	genbank	54_36p	+1	provisional	missense	c.1514	p.Q505P	0.999	NULL	HMMPfam_YEATS	-	no_errors
ABCC5	10057	genome.wustl.edu	36	3	185152035	185152035	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	3	185152035	185152035	G	A	SNP	ABCC5	NM_005688	human	genbank	54_36p	-1	reviewed	silent	c.2832	p.S944	0.997	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
TMEFF2	23671	genome.wustl.edu	36	2	192757359	192757359	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	2	192757359	192757359	C	A	SNP	TMEFF2	NM_016192	human	genbank	54_36p	-1	provisional	missense	c.378	p.E126D	0.999	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
CFHR4	10877	genome.wustl.edu	36	1	195142704	195142704	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	195142704	195142704	A	T	SNP	CFHR4	ENST00000367416	human	ensembl	54_36p	+1	known	missense	c.530	p.Y177F	0.008	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
LOC100131961	0	genome.wustl.edu	36	1	208507109	208507109	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	208507109	208507109	C	T	SNP	LOC100131961	XR_036984	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.989	-	-	-	pseudogene
CNIH4	29097	genome.wustl.edu	36	1	222625687	222625687	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	222625687	222625687	A	T	SNP	CNIH4	NM_014184	human	genbank	54_36p	+1	provisional	missense	c.331	p.M111L	1.000	HMMPfam_Cornichon	HMMPfam_Cornichon	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31869045	31869048	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	TACT	TACT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	13	31869045	31869048	TACT	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.9512_9515	p.L3172fs	0.000:0.000:0.595:0.744	HMMPfam_BRCA-2_OB3,superfamily_Nucleic_acid_OB	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	(deletion:cds_exon[31869035,31869181])	no_errors
DSN1	79980	genome.wustl.edu	36	20	34829788	34829788	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	20	34829788	34829788	G	-	DEL	DSN1	NM_024918	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.427	p.Q143fs	1.000	HMMPfam_Mis12_component	HMMPfam_Mis12_component	(deletion:cds_exon[34829786,34829859])	no_errors
KRTAP9-9	81870	genome.wustl.edu	36	17	36665665	36665667	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	TGC	TGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	17	36665665	36665667	TGC	-	DEL	KRTAP9-9	NM_030975	human	genbank	54_36p	+1	reviewed	in_frame_del	c.457_459	p.C154in_frame_del	0.864:0.914:0.972	NULL	HMMPfam_Keratin_B2	(deletion:cds_exon[36665424,36665673])	no_errors
LOC100128528	0	genome.wustl.edu	36	19	54695629	54695630	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	19	54695629	54695630	-	AG	INS	LOC100128528	XM_001724244	human	genbank	54_36p	+1	model	frame_shift_ins	c.37_38	p.T14fs	0.000:0.000	NULL	NULL	-	no_errors
FAM111A	63901	genome.wustl.edu	36	11	58675980	58675980	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	11	58675980	58675980	G	-	DEL	FAM111A	NM_022074	human	genbank	54_36p	+1	validated	frame_shift_del	c.263	p.R88fs	0.000	NULL	superfamily_Pept_Ser_Cys	(deletion:cds_exon[58675799,58677553])	no_errors
LRRC32	2615	genome.wustl.edu	36	11	76049002	76049002	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	11	76049002	76049002	G	-	DEL	LRRC32	NM_005512	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1283	p.P428fs	0.000	superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	(deletion:cds_exon[76048296,76050200])	no_errors
SPOPL	339745	genome.wustl.edu	36	2	139038762	139038770	+	In_Frame_Del	DEL	GCTGAAGGT	GCTGAAGGT	-	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	GCTGAAGGT	GCTGAAGGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	2	139038762	139038770	GCTGAAGGT	-	DEL	SPOPL	NM_001001664	human	genbank	54_36p	+1	validated	in_frame_del	c.852_860	p.LKV285in_frame_del	0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	(deletion:cds_exon[139038748,139038890])	no_errors
HEATR1	55127	genome.wustl.edu	36	1	234786167	234786181	+	In_Frame_Del	DEL	CTCCAGATGAATCAC	CTCCAGATGAATCAC	-	novel	unknown	TCGA-29-1693-01A-01W-0633-09	TCGA-29-1693-10A-01W-0633-09	CTCCAGATGAATCAC	CTCCAGATGAATCAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4f86c7b2-2bf7-469c-92a6-eea9263daf4f	d6e9cf10-809b-49cb-9229-cf05553458d9	1	234786167	234786181	CTCCAGATGAATCAC	-	DEL	HEATR1	NM_018072	human	genbank	54_36p	-1	validated	in_frame_del	c.5370_5356	p.VIHLE1786in_frame_del	1.000:1.000:0.999:0.932:0.915:0.802:0.780:0.913:0.992:0.992:0.996:0.997:0.997:0.998:0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	(deletion:cds_exon[234786023,234786181])	no_errors
