Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
JARID1A	5927	genome.wustl.edu	36	12	308267	308267	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	12	308267	308267	G	C	SNP	JARID1A	NM_001042603	human	genbank	54_36p	-1	reviewed	missense	c.1963	p.Q655E	1.000	NULL	HMMSmart_SM00545,HMMSmart_SM00501,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMSmart_SM00558	-	no_errors
OR51B5	282763	genome.wustl.edu	36	11	5320674	5320674	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	11	5320674	5320674	T	A	SNP	OR51B5	NM_001005567	human	genbank	54_36p	-1	provisional	silent	c.657	p.I219	0.002	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
KAL1	3730	genome.wustl.edu	36	X	8482030	8482030	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	X	8482030	8482030	G	T	SNP	KAL1	NM_000216	human	genbank	54_36p	-1	reviewed	silent	c.1317	p.G439	0.289	HMMSmart_FN3	superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
PAK7	57144	genome.wustl.edu	36	20	9471271	9471271	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	20	9471271	9471271	G	A	SNP	PAK7	NM_020341	human	genbank	54_36p	-1	reviewed	missense	c.1966	p.R656W	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,HMMPfam_PBD,HMMSmart_PBD,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
MYH2	4620	genome.wustl.edu	36	17	10365335	10365335	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	17	10365335	10365335	A	T	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	missense	c.5813	p.I1938K	0.776	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11698389	11698389	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	17	11698389	11698389	C	A	SNP	DNAH9	NM_001372	human	genbank	54_36p	+1	reviewed	silent	c.9852	p.P3284	1.000	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
PLA2G2C	391013	genome.wustl.edu	36	1	20371895	20371895	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	1	20371895	20371895	T	G	SNP	PLA2G2C	NM_001105572	human	genbank	54_36p	-1	inferred	missense	c.265	p.I89L	0.009	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2	PatternScan_PA2_HIS,HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2,PatternScan_PA2_ASP	-	no_errors
CHEK2	11200	genome.wustl.edu	36	22	27413975	27413975	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	22	27413975	27413975	C	A	SNP	CHEK2	NM_001005735	human	genbank	54_36p	-1	reviewed	splice_site	c.1672-1	e15-1	0.992	-	-	-	no_errors
TRNAU1AP	54952	genome.wustl.edu	36	1	28777579	28777579	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	1	28777579	28777579	T	C	SNP	TRNAU1AP	NR_003109	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000172533	0	genome.wustl.edu	36	16	29003299	29003299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	16	29003299	29003299	G	A	SNP	ENSG00000172533	ENST00000327307	human	ensembl	54_36p	+1	known	missense	c.491	p.R164H	0.991	NULL	NULL	-	no_start_codon:no_stop_codon
KIF13B	23303	genome.wustl.edu	36	8	29095374	29095374	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	8	29095374	29095374	A	T	SNP	KIF13B	NM_015254	human	genbank	54_36p	-1	validated	missense	c.566	p.L189Q	1.000	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
TAF1L	138474	genome.wustl.edu	36	9	32623772	32623772	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	9	32623772	32623772	G	T	SNP	TAF1L	NM_153809	human	genbank	54_36p	-1	provisional	silent	c.1806	p.T602	0.992	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
CDC2L5	8621	genome.wustl.edu	36	7	40094456	40094456	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	7	40094456	40094456	G	C	SNP	CDC2L5	NM_003718	human	genbank	54_36p	+1	reviewed	splice_site	c.3235+1	e12+1	1.000	-	-	-	no_errors
SLC38A5	92745	genome.wustl.edu	36	X	48202876	48202876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	X	48202876	48202876	G	A	SNP	SLC38A5	NM_033518	human	genbank	54_36p	-1	validated	missense	c.1307	p.P436L	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
KLK11	11012	genome.wustl.edu	36	19	56219387	56219387	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	19	56219387	56219387	G	T	SNP	KLK11	ENST00000391804	human	ensembl	54_36p	-1	known	silent	c.264	p.S88	0.065	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LILRB4	11006	genome.wustl.edu	36	19	59871189	59871189	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	19	59871189	59871189	T	G	SNP	LILRB4	NM_006847	human	genbank	54_36p	+1	reviewed	missense	c.1254	p.F418L	0.023	NULL	superfamily_Immunoglobulin,HMMPfam_ig	-	no_errors
CHD7	55636	genome.wustl.edu	36	8	61912082	61912082	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	8	61912082	61912082	G	T	SNP	CHD7	NM_017780	human	genbank	54_36p	+1	reviewed	missense	c.4142	p.C1381F	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
ZIK1	284307	genome.wustl.edu	36	19	62793852	62793852	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	19	62793852	62793852	A	T	SNP	ZIK1	NM_001010879	human	genbank	54_36p	+1	provisional	missense	c.861	p.R287S	0.002	superfamily_Multiheme cytochromes,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_Multiheme cytochromes,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ALMS1	7840	genome.wustl.edu	36	2	73532165	73532165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	2	73532165	73532165	G	A	SNP	ALMS1	NM_015120	human	genbank	54_36p	+1	reviewed	missense	c.5000	p.R1667K	0.000	NULL	NULL	-	no_errors
CCDC146	57639	genome.wustl.edu	36	7	76754705	76754705	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	7	76754705	76754705	C	G	SNP	CCDC146	NM_020879	human	genbank	54_36p	+1	validated	missense	c.2290	p.L764V	0.993	NULL	NULL	-	no_errors
THBS4	7060	genome.wustl.edu	36	5	79391339	79391339	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	5	79391339	79391339	C	A	SNP	THBS4	NM_003248	human	genbank	54_36p	+1	reviewed	missense	c.842	p.A281E	0.028	NULL	PatternScan_EGF_1,HMMSmart_TSPN,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_SSF103647,HMMPfam_TSP_3,superfamily_ConA_like_lec_gl,HMMPfam_TSP_C	-	no_errors
AKAP9	10142	genome.wustl.edu	36	7	91470134	91470134	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	7	91470134	91470134	A	G	SNP	AKAP9	NM_005751	human	genbank	54_36p	+1	reviewed	silent	c.2967	p.Q989	0.971	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors
HTR7	3363	genome.wustl.edu	36	10	92499131	92499131	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	10	92499131	92499131	G	T	SNP	HTR7	NM_019859	human	genbank	54_36p	-1	reviewed	missense	c.740	p.A247E	0.800	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR13C8	138802	genome.wustl.edu	36	9	106371726	106371726	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	9	106371726	106371726	C	A	SNP	OR13C8	NM_001004483	human	genbank	54_36p	+1	provisional	missense	c.457	p.L153I	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ENSG00000221149	0	genome.wustl.edu	36	2	106681463	106681463	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	2	106681463	106681463	G	A	SNP	ENSG00000221149	ENST00000408222	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
VAV3	10451	genome.wustl.edu	36	1	107961752	107961752	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	1	107961752	107961752	A	T	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	missense	c.1940	p.V647D	1.000	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMPfam_SH3_1	-	no_errors
C6orf186	728464	genome.wustl.edu	36	6	110726938	110726938	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	6	110726938	110726938	G	A	SNP	C6orf186	ENST00000338882	human	ensembl	54_36p	-1	known	silent	c.666	p.H222	0.991	NULL	NULL	-	no_errors
CDK5RAP2	55755	genome.wustl.edu	36	9	122239448	122239448	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	9	122239448	122239448	G	A	SNP	CDK5RAP2	NM_018249	human	genbank	54_36p	-1	reviewed	nonsense	c.3901	p.Q1301*	1.000	NULL	HMMPfam_Microtub_assoc	-	no_errors
PARP14	54625	genome.wustl.edu	36	3	123901709	123901709	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	3	123901709	123901709	C	A	SNP	PARP14	NM_017554	human	genbank	54_36p	+1	validated	missense	c.1618	p.P540T	0.000	NULL	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128132481	128132481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	12	128132481	128132481	C	T	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	missense	c.1699	p.G567S	0.992	NULL	NULL	-	no_errors
TG	7038	genome.wustl.edu	36	8	134216148	134216148	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	8	134216148	134216148	G	T	SNP	TG	NM_003235	human	genbank	54_36p	+1	validated	missense	c.8235	p.L2745F	0.000	NULL	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
MGAM	8972	genome.wustl.edu	36	7	141408874	141408874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	7	141408874	141408874	G	A	SNP	MGAM	NM_004668	human	genbank	54_36p	+1	reviewed	missense	c.4160	p.R1387H	0.952	HMMPfam_Glyco_hydro_31	HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31	-	no_errors
LCE2A	353139	genome.wustl.edu	36	1	150938094	150938094	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	1	150938094	150938094	G	T	SNP	LCE2A	NM_178428	human	genbank	54_36p	+1	validated	missense	c.93	p.Q31H	0.964	NULL	NULL	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179183319	179183319	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	2	179183319	179183319	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.39125	p.T13042N	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TRIM67	440730	genome.wustl.edu	36	1	229402622	229402622	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	1	229402622	229402622	T	C	SNP	TRIM67	NM_001004342	human	genbank	54_36p	+1	validated	silent	c.1369	p.L457	0.997	HMMSmart_SM00502	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00502,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449,HMMPfam_SPRY	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26584003	26584015	+	Frame_Shift_Del	DEL	CAGTGGTCTCATG	CAGTGGTCTCATG	-	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	CAGTGGTCTCATG	CAGTGGTCTCATG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	17	26584003	26584015	CAGTGGTCTCATG	-	DEL	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.3474_3486	p.S1159fs	1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	(deletion:cds_exon[26583844,26584025])	no_errors
RYR3	6263	genome.wustl.edu	36	15	31714100	31714111	+	In_Frame_Del	DEL	CCCCGTCTGGTG	CCCCGTCTGGTG	-	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	CCCCGTCTGGTG	CCCCGTCTGGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	15	31714100	31714111	CCCCGTCTGGTG	-	DEL	RYR3	NM_001036	human	genbank	54_36p	+1	validated	in_frame_del	c.3049_3060	p.RLVP1018in_frame_del	1.000:1.000:0.997:1.000:1.000:0.862:0.904:0.997:0.997:1.000:1.000:1.000	HMMPfam_RyR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	(deletion:cds_exon[31714079,31714226])	no_errors
OR4C6	219432	genome.wustl.edu	36	11	55190101	55190108	+	Frame_Shift_Del	DEL	GCCATGAA	GCCATGAA	-	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	GCCATGAA	GCCATGAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	11	55190101	55190108	GCCATGAA	-	DEL	OR4C6	NM_001004704	human	genbank	54_36p	+1	provisional	frame_shift_del	c.883_890	p.A295fs	0.020:0.018:0.022:0.046:0.064:0.027:0.009:0.006	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[55189219,55190148])	no_errors
LOC100132863	0	genome.wustl.edu	36	9	123322415	123322415	+	RNA	DEL	C	C	-	novel	unknown	TCGA-29-1694-01A-01W-0633-09	TCGA-29-1694-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6bc24f9b-1890-46f9-95b5-2113e4633a81	890b84f9-25a6-4f26-b662-dd110bfb1696	9	123322415	123322415	C	-	DEL	LOC100132863	XR_039604	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	(deletion:rna[123321456,123322530])	pseudogene
