Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-CO2	0	genome.wustl.edu	36	MT	7845	7845	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	MT	7845	7845	A	G	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	missense	c.259	p.T87A	NULL	superfamily_Cytochrome c oxidase subunit II-like transmembrane region	HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region,superfamily_Cupredoxins,HMMPfam_COX2,PatternScan_COX2	-	no_errors
MT-ATP6	4508	genome.wustl.edu	36	MT	8937	8937	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	MT	8937	8937	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.410	p.L137P	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	-	no_errors
MT-ATP6	4508	genome.wustl.edu	36	MT	8949	8949	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	MT	8949	8949	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.422	p.L141P	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,PatternScan_ATPASE_A,superfamily_ATPase_F0_A	-	no_errors
MT-ATP6	4508	genome.wustl.edu	36	MT	8994	8994	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	MT	8994	8994	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.467	p.L156P	NULL	HMMPfam_ATP-synt_A,PatternScan_ATPASE_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,PatternScan_ATPASE_A,superfamily_ATPase_F0_A	-	no_errors
ENSG00000215746	0	genome.wustl.edu	36	NT_113888	11090	11090	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	NT_113888	11090	11090	G	A	SNP	ENSG00000215746	ENST00000400836	human	ensembl	54_36p	-1	novel	splice_site	c.NULL	NULL	NULL	-	-	-	no_coding_region:pseudogene
MT-ND4	4538	genome.wustl.edu	36	MT	11173	11173	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	MT	11173	11173	A	G	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	missense	c.413	p.N138S	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
LONP1	9361	genome.wustl.edu	36	19	5658747	5658747	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	19	5658747	5658747	G	A	SNP	LONP1	NM_004793	human	genbank	54_36p	-1	reviewed	silent	c.1023	p.A341	0.974	HMMPfam_LON,HMMSmart_LON	HMMPfam_LON,HMMSmart_LON,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,HMMPfam_Lon_C,superfamily_Ribosomal_S5_D2-typ_fold,PatternScan_LON_SER	-	no_errors
LOC100133229	0	genome.wustl.edu	36	12	7174229	7174229	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	12	7174229	7174229	A	G	SNP	LOC100133229	XM_001721004	human	genbank	54_36p	-1	model	missense	c.125	p.V42A	1.000	NULL	NULL	-	no_errors
CD68	968	genome.wustl.edu	36	17	7424284	7424284	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	17	7424284	7424284	C	T	SNP	CD68	NM_001251	human	genbank	54_36p	+1	reviewed	missense	c.482	p.T161M	0.003	HMMPfam_Lamp	HMMPfam_Lamp,PatternScan_LAMP_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	17	7519128	7519128	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176F	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TPTE	7179	genome.wustl.edu	36	21	9966555	9966555	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	21	9966555	9966555	G	A	SNP	TPTE	NM_199261	human	genbank	54_36p	-1	validated	missense	c.550	p.L184F	0.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
ATG4D	84971	genome.wustl.edu	36	19	10520588	10520588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	19	10520588	10520588	G	A	SNP	ATG4D	NM_032885	human	genbank	54_36p	+1	reviewed	missense	c.844	p.A282T	1.000	HMMPfam_Peptidase_C54	HMMPfam_Peptidase_C54	-	no_errors
TRDMT1	1787	genome.wustl.edu	36	10	17239460	17239460	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	10	17239460	17239460	C	A	SNP	TRDMT1	NM_004412	human	genbank	54_36p	-1	reviewed	silent	c.873	p.V291	0.700	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_2	-	no_errors
MAP1S	55201	genome.wustl.edu	36	19	17697856	17697856	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	19	17697856	17697856	G	A	SNP	MAP1S	NM_018174	human	genbank	54_36p	+1	validated	silent	c.663	p.P221	0.081	NULL	NULL	-	no_errors
ETNK1	55500	genome.wustl.edu	36	12	22687977	22687977	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	12	22687977	22687977	G	C	SNP	ETNK1	NM_018638	human	genbank	54_36p	+1	reviewed	missense	c.437	p.G146A	1.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Choline_kinase	-	no_errors
PPARGC1A	10891	genome.wustl.edu	36	4	23413042	23413042	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	4	23413042	23413042	C	T	SNP	PPARGC1A	NM_013261	human	genbank	54_36p	-1	reviewed	missense	c.2044	p.G682S	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
STK31	56164	genome.wustl.edu	36	7	23821313	23821313	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	7	23821313	23821313	A	G	SNP	STK31	NM_031414	human	genbank	54_36p	+1	reviewed	missense	c.2786	p.E929G	0.991	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	-	no_errors
ADAMTS5	11096	genome.wustl.edu	36	21	27224138	27224138	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	21	27224138	27224138	G	A	SNP	ADAMTS5	NM_007038	human	genbank	54_36p	-1	reviewed	silent	c.2163	p.C721	0.999	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS5	11096	genome.wustl.edu	36	21	27237601	27237601	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	21	27237601	27237601	G	A	SNP	ADAMTS5	NM_007038	human	genbank	54_36p	-1	reviewed	silent	c.1374	p.A458	0.998	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
CFB	629	genome.wustl.edu	36	6	32027702	32027702	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	6	32027702	32027702	C	T	SNP	CFB	NM_001710	human	genbank	54_36p	+1	reviewed	silent	c.2211	p.H737	0.311	superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin,HMMSmart_SM00020	superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin,HMMSmart_SM00020,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
GPI	2821	genome.wustl.edu	36	19	39548056	39548056	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	19	39548056	39548056	A	G	SNP	GPI	ENST00000392234	human	ensembl	54_36p	+1	known	missense	c.52	p.M18V	0.012	NULL	superfamily_SSF53697,HMMPfam_PGI	-	no_start_codon
LOC285634	285634	genome.wustl.edu	36	5	39756825	39756825	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	5	39756825	39756825	C	T	SNP	LOC285634	XR_017261	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DMKN	93099	genome.wustl.edu	36	19	40694244	40694244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	19	40694244	40694244	C	T	SNP	DMKN	NM_033317	human	genbank	54_36p	-1	reviewed	missense	c.827	p.S276N	0.007	NULL	NULL	-	no_errors
LRFN3	79414	genome.wustl.edu	36	19	41127419	41127419	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	19	41127419	41127419	C	T	SNP	LRFN3	NM_024509	human	genbank	54_36p	+1	provisional	silent	c.1545	p.C515	0.300	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	-	no_errors
TCEB3B	51224	genome.wustl.edu	36	18	42814007	42814007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	18	42814007	42814007	C	T	SNP	TCEB3B	NM_016427	human	genbank	54_36p	-1	reviewed	missense	c.1627	p.A543T	0.000	NULL	HMMPfam_TFIIS,HMMSmart_TFS2N,HMMPfam_Elongin_A	-	no_errors
LOC729143	729143	genome.wustl.edu	36	3	44594506	44594506	+	RNA	SNP	A	A	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	3	44594506	44594506	A	C	SNP	LOC729143	XR_015907	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.102	-	-	-	pseudogene
OR4X1	390113	genome.wustl.edu	36	11	48242346	48242346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	11	48242346	48242346	C	T	SNP	OR4X1	NM_001004726	human	genbank	54_36p	+1	provisional	missense	c.358	p.R120C	1.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
AQP2	359	genome.wustl.edu	36	12	48630887	48630887	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	12	48630887	48630887	G	T	SNP	AQP2	NM_000486	human	genbank	54_36p	+1	reviewed	nonsense	c.7	p.E3*	1.000	superfamily_MIP,HMMPfam_MIP	superfamily_MIP,HMMPfam_MIP,PatternScan_MIP	-	no_errors
TFAP2D	83741	genome.wustl.edu	36	6	50848376	50848376	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	6	50848376	50848376	C	G	SNP	TFAP2D	NM_172238	human	genbank	54_36p	+1	validated	missense	c.1199	p.T400R	1.000	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
KRT86	3892	genome.wustl.edu	36	12	50981998	50981998	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	12	50981998	50981998	G	C	SNP	KRT86	NM_002284	human	genbank	54_36p	+1	reviewed	missense	c.31	p.A11P	0.862	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC390730	390730	genome.wustl.edu	36	16	51526524	51526524	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	16	51526524	51526524	G	A	SNP	LOC390730	XR_016422	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.801	-	-	-	pseudogene
CSTF2T	23283	genome.wustl.edu	36	10	53128642	53128642	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	10	53128642	53128642	G	C	SNP	CSTF2T	NM_015235	human	genbank	54_36p	-1	validated	missense	c.674	p.P225R	0.991	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
VEZF1	7716	genome.wustl.edu	36	17	53415252	53415252	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	17	53415252	53415252	A	G	SNP	VEZF1	NM_007146	human	genbank	54_36p	-1	validated	missense	c.535	p.C179R	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PDGFRA	5156	genome.wustl.edu	36	4	54849808	54849808	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	4	54849808	54849808	C	T	SNP	PDGFRA	NM_006206	human	genbank	54_36p	+1	reviewed	silent	c.2760	p.H920	0.908	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TSKS	60385	genome.wustl.edu	36	19	54957202	54957202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	19	54957202	54957202	C	T	SNP	TSKS	NM_021733	human	genbank	54_36p	-1	reviewed	missense	c.270	p.M90I	0.871	NULL	NULL	-	no_errors
CGNL1	84952	genome.wustl.edu	36	15	55521939	55521939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	15	55521939	55521939	G	A	SNP	CGNL1	NM_032866	human	genbank	54_36p	+1	validated	missense	c.1774	p.A592T	1.000	NULL	HMMPfam_Myosin_tail_1	-	no_errors
OR8H1	219469	genome.wustl.edu	36	11	55815071	55815071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	11	55815071	55815071	G	A	SNP	OR8H1	NM_001005199	human	genbank	54_36p	-1	provisional	missense	c.44	p.T15M	0.444	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TBC1D3P2	0	genome.wustl.edu	36	17	57699339	57699339	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	17	57699339	57699339	C	A	SNP	TBC1D3P2	ENST00000339120	human	ensembl	54_36p	-1	known	silent	c.864	p.V288	1.000	HMMPfam_TBC,HMMSmart_TBC	superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC	-	no_errors
LOC390735	390735	genome.wustl.edu	36	16	61942419	61942419	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	16	61942419	61942419	A	C	SNP	LOC390735	XM_001129659	human	genbank	54_36p	-1	model	missense	c.136	p.Y46D	1.000	superfamily_Ribosomal protein S8,HMMPfam_Ribosomal_S8	superfamily_Ribosomal protein S8,HMMPfam_Ribosomal_S8	-	pseudogene
RHOBTB1	9886	genome.wustl.edu	36	10	62304795	62304795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	10	62304795	62304795	C	T	SNP	RHOBTB1	NM_014836	human	genbank	54_36p	-1	reviewed	missense	c.1738	p.V580I	0.949	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	superfamily_SSF52540,HMMSmart_RHO,HMMPfam_Ras,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	-	no_errors
FTSJD1	55783	genome.wustl.edu	36	16	69877317	69877317	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	16	69877317	69877317	T	G	SNP	FTSJD1	NM_001099642	human	genbank	54_36p	-1	validated	missense	c.8	p.K3T	0.996	NULL	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_FtsJ	-	no_errors
NPFFR2	10886	genome.wustl.edu	36	4	73213313	73213313	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	4	73213313	73213313	C	A	SNP	NPFFR2	NM_004885	human	genbank	54_36p	+1	reviewed	silent	c.447	p.I149	0.994	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ALMS1	7840	genome.wustl.edu	36	2	73533955	73533955	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	2	73533955	73533955	C	G	SNP	ALMS1	NM_015120	human	genbank	54_36p	+1	reviewed	missense	c.6790	p.L2264V	0.939	NULL	NULL	-	no_errors
LOC100132585	0	genome.wustl.edu	36	7	73961100	73961100	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	7	73961100	73961100	G	T	SNP	LOC100132585	XM_001722111	human	genbank	54_36p	-1	model	silent	c.531	p.A177	0.358	NULL	NULL	-	no_errors
ADAMTS18	170692	genome.wustl.edu	36	16	75912520	75912520	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	16	75912520	75912520	G	T	SNP	ADAMTS18	NM_199355	human	genbank	54_36p	-1	reviewed	nonsense	c.2244	p.C748*	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
ZMIZ1	57178	genome.wustl.edu	36	10	80723253	80723253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	10	80723253	80723253	C	T	SNP	ZMIZ1	NM_020338	human	genbank	54_36p	+1	validated	missense	c.1067	p.T356M	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors
ATP2C2	9914	genome.wustl.edu	36	16	83051882	83051882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	16	83051882	83051882	G	A	SNP	ATP2C2	NM_014861	human	genbank	54_36p	+1	validated	missense	c.2455	p.G819R	1.000	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_C	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
HNRNPD	3184	genome.wustl.edu	36	4	83497070	83497070	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	4	83497070	83497070	A	G	SNP	HNRNPD	NM_031370	human	genbank	54_36p	-1	reviewed	silent	c.756	p.C252	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	HMMPfam_CBFNT,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
ATP2B1	490	genome.wustl.edu	36	12	88508975	88508975	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	12	88508975	88508975	T	C	SNP	ATP2B1	NM_001682	human	genbank	54_36p	-1	reviewed	missense	c.3580	p.I1194V	1.000	NULL	HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors
CRTC3	64784	genome.wustl.edu	36	15	88973658	88973658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	15	88973658	88973658	C	T	SNP	CRTC3	NM_022769	human	genbank	54_36p	+1	validated	missense	c.1156	p.R386W	0.251	NULL	NULL	-	no_errors
LONRF2	164832	genome.wustl.edu	36	2	100282737	100282737	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	2	100282737	100282737	C	A	SNP	LONRF2	NM_198461	human	genbank	54_36p	-1	validated	nonsense	c.1141	p.E381*	0.961	superfamily_TPR-like	superfamily_TPR-like,superfamily_RING/U-box,HMMSmart_SM00184,HMMSmart_SM00028,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_LON,HMMSmart_SM00464	-	no_errors
SH3RF3	344558	genome.wustl.edu	36	2	109330728	109330728	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	2	109330728	109330728	A	G	SNP	SH3RF3	NM_001099289	human	genbank	54_36p	+1	provisional	missense	c.740	p.Y247C	0.459	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_stop_codon
SYPL2	284612	genome.wustl.edu	36	1	109819740	109819740	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	1	109819740	109819740	C	T	SNP	SYPL2	NM_001040709	human	genbank	54_36p	+1	validated	silent	c.144	p.F48	1.000	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
SYPL2	284612	genome.wustl.edu	36	1	109821011	109821011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	1	109821011	109821011	C	T	SNP	SYPL2	NM_001040709	human	genbank	54_36p	+1	validated	silent	c.345	p.A115	0.205	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
ALPK1	80216	genome.wustl.edu	36	4	113571067	113571067	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	4	113571067	113571067	G	A	SNP	ALPK1	NM_001102406	human	genbank	54_36p	+1	validated	silent	c.915	p.T305	0.881	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase	-	no_errors
POT1	25913	genome.wustl.edu	36	7	124319664	124319664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	7	124319664	124319664	C	T	SNP	POT1	NM_015450	human	genbank	54_36p	-1	reviewed	missense	c.16	p.A6T	0.006	NULL	superfamily_Nucleic acid-binding proteins,HMMPfam_Telo_bind	-	no_errors
GRM8	2918	genome.wustl.edu	36	7	125960316	125960316	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	7	125960316	125960316	T	G	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	missense	c.2356	p.T786P	1.000	HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
JAKMIP3	282973	genome.wustl.edu	36	10	133780909	133780909	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	10	133780909	133780909	C	A	SNP	JAKMIP3	NM_001105521	human	genbank	54_36p	+1	provisional	silent	c.474	p.I158	0.868	NULL	NULL	-	no_errors
TG	7038	genome.wustl.edu	36	8	134093356	134093356	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	8	134093356	134093356	C	T	SNP	TG	NM_003235	human	genbank	54_36p	+1	validated	silent	c.6291	p.A2097	0.181	NULL	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
PKD2L2	27039	genome.wustl.edu	36	5	137254094	137254094	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	5	137254094	137254094	C	A	SNP	PKD2L2	NM_014386	human	genbank	54_36p	+1	validated	nonsense	c.57	p.Y19*	0.018	NULL	HMMPfam_PKD_channel	-	no_errors
NOBOX	135935	genome.wustl.edu	36	7	143727871	143727871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	7	143727871	143727871	G	A	SNP	NOBOX	NM_001080413	human	genbank	54_36p	-1	provisional	missense	c.1066	p.R356W	0.688	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
CYP11B2	1585	genome.wustl.edu	36	8	143996037	143996037	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	8	143996037	143996037	C	T	SNP	CYP11B2	NM_000498	human	genbank	54_36p	-1	reviewed	silent	c.222	p.E74	0.940	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
ABCF2	10061	genome.wustl.edu	36	7	150542079	150542079	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	7	150542079	150542079	G	A	SNP	ABCF2	NM_005692	human	genbank	54_36p	-1	reviewed	silent	c.1866	p.N622	0.996	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
LRBA	987	genome.wustl.edu	36	4	151728662	151728662	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	4	151728662	151728662	T	G	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.6351	p.K2117N	1.000	superfamily_PH domain-like	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
uc003ezv.1	0	genome.wustl.edu	36	3	155323156	155323156	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	3	155323156	155323156	G	A	SNP	uc003ezv.1	ENST00000356448	human	ensembl	54_36p	+1	known	missense	c.685	p.E229K	0.033	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	no_errors
uc003ezv.1	0	genome.wustl.edu	36	3	155440867	155440867	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	3	155440867	155440867	C	T	SNP	uc003ezv.1	ENST00000356448	human	ensembl	54_36p	+1	known	silent	c.2109	p.V703	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
DDR2	4921	genome.wustl.edu	36	1	161012065	161012065	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	1	161012065	161012065	G	C	SNP	DDR2	NM_001014796	human	genbank	54_36p	+1	reviewed	splice_site	c.1857-1	e13-1	1.000	-	-	-	no_errors
KCNH7	90134	genome.wustl.edu	36	2	162944608	162944608	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	2	162944608	162944608	C	T	SNP	KCNH7	NM_033272	human	genbank	54_36p	-1	reviewed	splice_site	c.3131+1	e14+1	1.000	-	-	-	no_errors
LMX1A	4009	genome.wustl.edu	36	1	163449582	163449582	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	1	163449582	163449582	G	A	SNP	LMX1A	NM_177398	human	genbank	54_36p	-1	provisional	missense	c.589	p.R197C	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
TRIM60	166655	genome.wustl.edu	36	4	166181867	166181867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	4	166181867	166181867	C	T	SNP	TRIM60	NM_152620	human	genbank	54_36p	+1	reviewed	missense	c.1193	p.A398V	0.000	HMMPfam_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY	-	no_errors
BAT2D1	23215	genome.wustl.edu	36	1	169827385	169827385	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	1	169827385	169827385	C	T	SNP	BAT2D1	ENST00000392080	human	ensembl	54_36p	+1	known	missense	c.8233	p.R2745W	1.000	NULL	HMMPfam_BAT2_N	-	no_errors
GORASP2	26003	genome.wustl.edu	36	2	171530624	171530624	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	2	171530624	171530624	C	G	SNP	GORASP2	NM_015530	human	genbank	54_36p	+1	reviewed	missense	c.1097	p.P366R	1.000	HMMPfam_GRASP55_65	superfamily_PDZ domain-like,HMMPfam_GRASP55_65	-	no_errors
KLHL6	89857	genome.wustl.edu	36	3	184755902	184755902	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	3	184755902	184755902	C	T	SNP	KLHL6	NM_130446	human	genbank	54_36p	-1	validated	silent	c.234	p.V78	1.000	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors
MFSD6	54842	genome.wustl.edu	36	2	191010239	191010239	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	2	191010239	191010239	G	C	SNP	MFSD6	NM_017694	human	genbank	54_36p	+1	validated	missense	c.1239	p.R413S	0.028	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
MUC20	200958	genome.wustl.edu	36	3	196939092	196939092	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	3	196939092	196939092	G	T	SNP	MUC20	NM_152673	human	genbank	54_36p	+1	reviewed	missense	c.1434	p.R478S	0.000	NULL	NULL	-	no_errors
LOC100130249	0	genome.wustl.edu	36	1	232961753	232961753	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	1	232961753	232961753	T	C	SNP	LOC100130249	XM_001722882	human	genbank	54_36p	-1	model	missense	c.470	p.Y157C	0.001	NULL	NULL	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245654212	245654212	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	1	245654212	245654212	G	A	SNP	NLRP3	NM_001079821	human	genbank	54_36p	+1	reviewed	missense	c.844	p.D282N	0.024	HMMPfam_NACHT	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1	-	no_errors
FASTKD3	79072	genome.wustl.edu	36	5	7920620	7920623	+	Frame_Shift_Del	DEL	GAGG	GAGG	-	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	GAGG	GAGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	5	7920620	7920623	GAGG	-	DEL	FASTKD3	NM_024091	human	genbank	54_36p	-1	validated	frame_shift_del	c.577_574	p.P192fs	0.770:0.781:0.982:0.982	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	(deletion:cds_exon[7919759,7921196])	no_errors
EHF	26298	genome.wustl.edu	36	11	34624790	34624798	+	In_Frame_Del	DEL	AGCATCTGA	AGCATCTGA	-	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	AGCATCTGA	AGCATCTGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	11	34624790	34624798	AGCATCTGA	-	DEL	EHF	NM_012153	human	genbank	54_36p	+1	reviewed	in_frame_del	c.326_334	p.HLK110in_frame_del	1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.991:1.000	superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	(deletion:cds_exon[34624562,34624807])	no_errors
TMEM213	155006	genome.wustl.edu	36	7	138136676	138136676	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	7	138136676	138136676	G	-	DEL	TMEM213	NM_001085429	human	genbank	54_36p	+1	validated	frame_shift_del	c.147	p.Q49fs	0.993	NULL	NULL	(deletion:cds_exon[138136612,138136683])	no_errors
TM4SF20	79853	genome.wustl.edu	36	2	227943898	227943899	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-29-1695-01A-01W-0633-09	TCGA-29-1695-10A-01W-0633-09	CT	CT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	bbf1daec-d2ee-4279-932a-024e03ac9273	03e23f9c-96bb-44a0-9f3f-db563f94848b	2	227943898	227943899	CT	-	DEL	TM4SF20	NM_024795	human	genbank	54_36p	-1	validated	frame_shift_del	c.226_225	p.R75fs	0.182:0.379	HMMPfam_L6_membrane	HMMPfam_L6_membrane	(deletion:cds_exon[227943875,227943940])	no_errors
