Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
SMCHD1	23347	genome.wustl.edu	36	18	2716478	2716478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	18	2716478	2716478	G	A	SNP	SMCHD1	NM_015295	human	genbank	54_36p	+1	validated	missense	c.2729	p.G910D	0.997	NULL	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors
FASTKD5	60493	genome.wustl.edu	36	20	3075432	3075432	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	20	3075432	3075432	G	T	SNP	FASTKD5	NM_021826	human	genbank	54_36p	-1	validated	missense	c.2285	p.S762Y	1.000	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
MYOM1	8736	genome.wustl.edu	36	18	3092625	3092625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	18	3092625	3092625	G	A	SNP	MYOM1	NM_003803	human	genbank	54_36p	-1	reviewed	missense	c.3422	p.T1141I	1.000	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	3254465	3254465	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	8	3254465	3254465	G	C	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	silent	c.1635	p.L545	0.853	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CAMKK1	84254	genome.wustl.edu	36	17	3726409	3726409	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	17	3726409	3726409	C	G	SNP	CAMKK1	NM_172207	human	genbank	54_36p	-1	reviewed	missense	c.967	p.D323H	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
VISA	57506	genome.wustl.edu	36	20	3786323	3786323	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	20	3786323	3786323	C	T	SNP	VISA	NM_020746	human	genbank	54_36p	+1	validated	silent	c.159	p.D53	0.570	NULL	NULL	-	no_errors
KIAA1543	57662	genome.wustl.edu	36	19	7588693	7588693	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	19	7588693	7588693	G	T	SNP	KIAA1543	NM_001080429	human	genbank	54_36p	+1	validated	missense	c.3581	p.C1194F	1.000	superfamily_PRC-barrel domain,HMMPfam_DUF1781	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors
PTPRD	5789	genome.wustl.edu	36	9	8489677	8489677	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	9	8489677	8489677	C	T	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	missense	c.2292	p.M764I	1.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
LOC729978	729978	genome.wustl.edu	36	16	11934987	11934987	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	16	11934987	11934987	G	T	SNP	LOC729978	XM_001723016	human	genbank	54_36p	-1	model	missense	c.325	p.L109I	0.000	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
SIN3B	23309	genome.wustl.edu	36	19	16841673	16841673	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	19	16841673	16841673	G	C	SNP	SIN3B	NM_015260	human	genbank	54_36p	+1	provisional	missense	c.2305	p.D769H	1.000	NULL	superfamily_PAH2 domain,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_SM00761	-	no_errors
SPAG6	9576	genome.wustl.edu	36	10	22716772	22716772	+	Silent	SNP	A	A	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	10	22716772	22716772	A	T	SNP	SPAG6	NM_012443	human	genbank	54_36p	+1	reviewed	silent	c.693	p.S231	0.753	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
IL25	64806	genome.wustl.edu	36	14	22914716	22914716	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	14	22914716	22914716	C	T	SNP	IL25	NM_022789	human	genbank	54_36p	+1	reviewed	silent	c.321	p.H107	0.998	HMMPfam_IL17,superfamily_Cystine-knot cytokines	HMMPfam_IL17,superfamily_Cystine-knot cytokines	-	no_errors
KRAS	3845	genome.wustl.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	12	25289552	25289552	C	G	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.34	p.G12R	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
SH2B1	25970	genome.wustl.edu	36	16	28788185	28788185	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	16	28788185	28788185	G	C	SNP	SH2B1	NM_015503	human	genbank	54_36p	+1	reviewed	missense	c.1289	p.S430T	1.000	NULL	HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
KRTAP26-1	388818	genome.wustl.edu	36	21	30613725	30613725	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	21	30613725	30613725	C	G	SNP	KRTAP26-1	NM_203405	human	genbank	54_36p	-1	validated	missense	c.500	p.S167T	0.003	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
HSPA1B	3304	genome.wustl.edu	36	6	31905613	31905613	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	6	31905613	31905613	C	A	SNP	HSPA1B	NM_005346	human	genbank	54_36p	+1	reviewed	missense	c.1907	p.T636N	1.000	NULL	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	-	no_errors
CRKRS	51755	genome.wustl.edu	36	17	34935856	34935856	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	17	34935856	34935856	C	G	SNP	CRKRS	NM_016507	human	genbank	54_36p	+1	validated	missense	c.3521	p.A1174G	0.990	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DEF6	50619	genome.wustl.edu	36	6	35396986	35396986	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	6	35396986	35396986	C	A	SNP	DEF6	NM_022047	human	genbank	54_36p	+1	validated	missense	c.1717	p.P573T	0.006	NULL	superfamily_SSF47473,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
DOPEY2	9980	genome.wustl.edu	36	21	36508694	36508694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	21	36508694	36508694	C	T	SNP	DOPEY2	NM_005128	human	genbank	54_36p	+1	validated	missense	c.1099	p.L367F	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
INO80	54617	genome.wustl.edu	36	15	39129587	39129587	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	15	39129587	39129587	C	G	SNP	INO80	NM_017553	human	genbank	54_36p	-1	validated	missense	c.2280	p.E760D	1.000	HMMPfam_SNF2_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
LOC128192	128192	genome.wustl.edu	36	1	45226901	45226901	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	1	45226901	45226901	A	G	SNP	LOC128192	XM_060887	human	genbank	54_36p	-1	model	silent	c.84	p.V28	0.999	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49616352	49616352	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	15	49616352	49616352	C	A	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	splice_site	c.1618-1	e12-1	1.000	-	-	-	no_errors
OR5M1	390168	genome.wustl.edu	36	11	56137522	56137522	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	11	56137522	56137522	T	A	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	missense	c.33	p.E11D	0.180	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FLNB	2317	genome.wustl.edu	36	3	58091614	58091614	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	3	58091614	58091614	C	T	SNP	FLNB	NM_001457	human	genbank	54_36p	+1	validated	silent	c.4329	p.F1443	1.000	superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	-	no_errors
LOC644456	0	genome.wustl.edu	36	2	58541607	58541607	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	2	58541607	58541607	T	C	SNP	LOC644456	XR_039438	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.006	-	-	-	pseudogene
CD226	10666	genome.wustl.edu	36	18	65714033	65714033	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	18	65714033	65714033	C	A	SNP	CD226	NM_006566	human	genbank	54_36p	-1	reviewed	missense	c.611	p.W204L	0.000	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGc2	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGc2	-	no_errors
LOC642236	642236	genome.wustl.edu	36	9	67944953	67944953	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	9	67944953	67944953	C	T	SNP	LOC642236	XR_041085	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
SLC10A1	6554	genome.wustl.edu	36	14	69322605	69322605	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	14	69322605	69322605	T	G	SNP	SLC10A1	NM_003049	human	genbank	54_36p	-1	validated	missense	c.529	p.K177Q	0.999	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
ARR3	407	genome.wustl.edu	36	X	69417392	69417392	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	X	69417392	69417392	T	A	SNP	ARR3	NM_004312	human	genbank	54_36p	+1	validated	missense	c.1065	p.H355Q	0.007	superfamily_E set domains	superfamily_E set domains,HMMPfam_Arrestin_N,PatternScan_ARRESTINS,HMMPfam_Arrestin_C	-	no_errors
C6orf221	154288	genome.wustl.edu	36	6	74129549	74129549	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	6	74129549	74129549	A	G	SNP	C6orf221	NM_001017361	human	genbank	54_36p	+1	validated	silent	c.180	p.G60	0.012	NULL	NULL	-	no_errors
CDKL2	8999	genome.wustl.edu	36	4	76751463	76751463	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	4	76751463	76751463	A	G	SNP	CDKL2	NM_003948	human	genbank	54_36p	-1	reviewed	missense	c.470	p.V157A	0.974	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SYTL2	54843	genome.wustl.edu	36	11	85137080	85137080	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	11	85137080	85137080	G	A	SNP	SYTL2	NM_032943	human	genbank	54_36p	-1	reviewed	silent	c.136	p.L46	1.000	NULL	superfamily_FYVE/PHD zinc finger,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
ENSG00000166013	0	genome.wustl.edu	36	11	89217876	89217876	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	11	89217876	89217876	A	T	SNP	ENSG00000166013	ENST00000359967	human	ensembl	54_36p	+1	known	missense	c.293	p.E98V	0.359	superfamily_RING/U-box,HMMPfam_zf-B_box,HMMSmart_SM00336	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_SM00336	-	no_stop_codon
SV2B	9899	genome.wustl.edu	36	15	89633849	89633849	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	15	89633849	89633849	G	C	SNP	SV2B	NM_014848	human	genbank	54_36p	+1	validated	silent	c.1803	p.G601	0.992	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
LOC642784	642784	genome.wustl.edu	36	X	91255420	91255420	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	X	91255420	91255420	G	A	SNP	LOC642784	XR_016262	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.715	-	-	-	pseudogene
KIF20B	9585	genome.wustl.edu	36	10	91501136	91501136	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	10	91501136	91501136	C	G	SNP	KIF20B	NM_016195	human	genbank	54_36p	+1	validated	missense	c.4030	p.Q1344E	0.999	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
KIAA1409	57578	genome.wustl.edu	36	14	93114128	93114128	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	14	93114128	93114128	G	T	SNP	KIAA1409	NM_020818	human	genbank	54_36p	+1	validated	missense	c.1868	p.C623F	1.000	NULL	NULL	-	no_errors
LOC642943	0	genome.wustl.edu	36	9	94688278	94688278	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	9	94688278	94688278	G	T	SNP	LOC642943	XR_039168	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.078	-	-	-	pseudogene
TMEM130	222865	genome.wustl.edu	36	7	98283762	98283762	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	7	98283762	98283762	C	T	SNP	TMEM130	NM_152913	human	genbank	54_36p	-1	validated	silent	c.1125	p.P375	0.928	NULL	superfamily_PKD domain	-	no_errors
VCAM1	7412	genome.wustl.edu	36	1	100962880	100962880	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	1	100962880	100962880	G	A	SNP	VCAM1	NM_001078	human	genbank	54_36p	+1	reviewed	nonsense	c.774	p.W258*	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMSmart_SM00406	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set,HMMPfam_ig,HMMSmart_SM00406	-	no_errors
DIO3	1735	genome.wustl.edu	36	14	101098076	101098076	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	14	101098076	101098076	A	C	SNP	DIO3	NM_001362	human	genbank	54_36p	+1	reviewed	missense	c.412	p.N138H	1.000	HMMPfam_T4_deiodinase	HMMPfam_T4_deiodinase	-	pseudogene
FGF14	2259	genome.wustl.edu	36	13	101325631	101325631	+	Silent	SNP	A	T	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	13	101325631	101325631	A	T	SNP	FGF14	NM_175929	human	genbank	54_36p	-1	reviewed	silent	c.225	p.G75	1.000	superfamily_Cytok_IL1_like,HMMSmart_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
ENSG00000176857	0	genome.wustl.edu	36	5	108415055	108415055	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	5	108415055	108415055	C	A	SNP	ENSG00000176857	ENST00000314747	human	ensembl	54_36p	-1	known	missense	c.1003	p.D335Y	1.000	NULL	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,HMMPfam_Connexin43	-	no_errors
ATXN7L2	127002	genome.wustl.edu	36	1	109830675	109830675	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	1	109830675	109830675	C	G	SNP	ATXN7L2	NM_153340	human	genbank	54_36p	+1	validated	missense	c.218	p.P73R	1.000	NULL	HMMPfam_SCA7	-	no_errors
TNC	3371	genome.wustl.edu	36	9	116886536	116886536	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	9	116886536	116886536	G	A	SNP	TNC	NM_002160	human	genbank	54_36p	-1	validated	missense	c.1904	p.T635M	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,HMMPfam_EGF,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors
GATC	283459	genome.wustl.edu	36	12	119368865	119368865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	12	119368865	119368865	C	T	SNP	GATC	NM_176818	human	genbank	54_36p	+1	provisional	missense	c.104	p.A35V	0.029	NULL	HMMPfam_Glu-tRNAGln	-	no_errors
USP53	54532	genome.wustl.edu	36	4	120408982	120408982	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	4	120408982	120408982	C	G	SNP	USP53	NM_019050	human	genbank	54_36p	+1	validated	missense	c.1247	p.S416C	0.721	NULL	superfamily_SSF54001,HMMPfam_UCH	-	no_errors
WDR40C	340578	genome.wustl.edu	36	X	125126579	125126579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	X	125126579	125126579	C	T	SNP	WDR40C	NM_001013628	human	genbank	54_36p	-1	provisional	missense	c.1010	p.R337H	0.998	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
GSDMC	56169	genome.wustl.edu	36	8	130857583	130857583	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	8	130857583	130857583	G	T	SNP	GSDMC	NM_031415	human	genbank	54_36p	-1	validated	silent	c.351	p.L117	0.000	HMMPfam_Gasdermin	HMMPfam_Gasdermin	-	no_errors
HTATSF1	27336	genome.wustl.edu	36	X	135421563	135421563	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	X	135421563	135421563	G	C	SNP	HTATSF1	NM_014500	human	genbank	54_36p	+1	provisional	missense	c.1993	p.E665Q	0.341	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
PCDHGA10	56106	genome.wustl.edu	36	5	140774849	140774849	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	5	140774849	140774849	G	T	SNP	PCDHGA10	NM_018913	human	genbank	54_36p	+1	reviewed	silent	c.1923	p.A641	0.398	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
CLEC5A	23601	genome.wustl.edu	36	7	141290228	141290228	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	7	141290228	141290228	G	T	SNP	CLEC5A	NM_013252	human	genbank	54_36p	-1	reviewed	missense	c.145	p.Q49K	0.154	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
NOTCH2NL	388677	genome.wustl.edu	36	1	143993053	143993053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	1	143993053	143993053	G	A	SNP	NOTCH2NL	NM_203458	human	genbank	54_36p	+1	validated	missense	c.626	p.C209Y	1.000	superfamily_EGF/Laminin,HMMSmart_SM00181	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
HLTF	6596	genome.wustl.edu	36	3	150285316	150285316	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	3	150285316	150285316	T	C	SNP	HLTF	NM_003071	human	genbank	54_36p	-1	reviewed	missense	c.71	p.N24S	0.952	NULL	HMMPfam_HIRAN,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150589942	150589942	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	1	150589942	150589942	G	T	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.6944	p.S2315Y	0.009	NULL	superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150592348	150592348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	1	150592348	150592348	C	T	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.4538	p.G1513D	0.000	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
SMC4	10051	genome.wustl.edu	36	3	161603297	161603297	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	3	161603297	161603297	A	T	SNP	SMC4	NM_001002800	human	genbank	54_36p	+1	validated	missense	c.458	p.K153M	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors
SCN7A	6332	genome.wustl.edu	36	2	167030287	167030287	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	2	167030287	167030287	T	A	SNP	SCN7A	NM_002976	human	genbank	54_36p	-1	validated	missense	c.872	p.E291V	0.999	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors
SLC7A14	57709	genome.wustl.edu	36	3	171680970	171680970	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	3	171680970	171680970	G	T	SNP	SLC7A14	NM_020949	human	genbank	54_36p	-1	validated	missense	c.1795	p.L599I	1.000	NULL	HMMPfam_AA_permease	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518922	7518922	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	17	7518922	7518922	C	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.652	p.V218fs	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7518902,7519014])	no_errors
SLC12A4	6560	genome.wustl.edu	36	16	66536515	66536533	+	Frame_Shift_Del	DEL	TGGGTGGGCCAGGCATGTT	TGGGTGGGCCAGGCATGTT	-	novel	unknown	TCGA-29-1696-01A-01W-0633-09	TCGA-29-1696-10A-01W-0633-09	TGGGTGGGCCAGGCATGTT	TGGGTGGGCCAGGCATGTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	52323a79-e1f0-4c1e-b6bc-b40927d1e268	c33b4324-c07b-4c48-bb1a-ce6c286280f5	16	66536515	66536533	TGGGTGGGCCAGGCATGTT	-	DEL	SLC12A4	NM_005072	human	genbank	54_36p	-1	validated	frame_shift_del	c.3142_3124	p.N1042fs	0.995:0.989:1.000:1.000:0.958:1.000:1.000:0.996:1.000:1.000:0.976:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1	(deletion:cds_exon[66536491,66536624])	no_errors
