Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MUC5AC	4586	genome.wustl.edu	36	11	1169422	1169422	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	11	1169422	1169422	T	C	SNP	MUC5AC	ENST00000358378	human	ensembl	54_36p	+1	known	silent	c.93	p.A31	0.000	NULL	HMMSmart_SM00214,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_start_codon
APBB1	322	genome.wustl.edu	36	11	6381550	6381550	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	11	6381550	6381550	C	A	SNP	APBB1	NM_001164	human	genbank	54_36p	-1	reviewed	missense	c.800	p.G267V	1.000	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518294	7518294	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	17	7518294	7518294	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.712	p.C238G	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
PRAMEF16	654348	genome.wustl.edu	36	1	13368970	13368970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	13368970	13368970	G	A	SNP	PRAMEF16	NM_001045480	human	genbank	54_36p	+1	provisional	missense	c.704	p.R235H	0.001	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
LOC729057	729057	genome.wustl.edu	36	22	14503203	14503203	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	22	14503203	14503203	T	C	SNP	LOC729057	XR_042044	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.994	-	-	-	no_errors
CPAMD8	27151	genome.wustl.edu	36	19	16952434	16952434	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	19	16952434	16952434	G	A	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	silent	c.1599	p.Y533	0.994	HMMPfam_A2M_N_2	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep,superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22074809	22074809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	22074809	22074809	C	T	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.3202	p.D1068N	0.998	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281,HMMPfam_Laminin_B	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	no_errors
SLC17A1	6568	genome.wustl.edu	36	6	25934680	25934680	+	Silent	SNP	C	G	G	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	6	25934680	25934680	C	G	SNP	SLC17A1	NM_005074	human	genbank	54_36p	-1	validated	silent	c.195	p.L65	0.000	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
TBC1D19	55296	genome.wustl.edu	36	4	26330832	26330832	+	Silent	SNP	T	C	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	4	26330832	26330832	T	C	SNP	TBC1D19	NM_018317	human	genbank	54_36p	+1	validated	silent	c.1071	p.F357	1.000	HMMSmart_SM00164	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
KIAA1522	57648	genome.wustl.edu	36	1	33009946	33009946	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	33009946	33009946	C	G	SNP	KIAA1522	NM_020888	human	genbank	54_36p	+1	validated	missense	c.2579	p.P860R	0.741	NULL	NULL	-	no_errors
TLR6	10333	genome.wustl.edu	36	4	38505421	38505421	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	4	38505421	38505421	T	G	SNP	TLR6	NM_006068	human	genbank	54_36p	-1	reviewed	missense	c.2069	p.N690T	0.521	superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors
LOC727884	727884	genome.wustl.edu	36	12	40967491	40967491	+	RNA	SNP	G	G	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	12	40967491	40967491	G	C	SNP	LOC727884	XR_015225	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.990	-	-	-	pseudogene
TP53TG5	27296	genome.wustl.edu	36	20	43440277	43440277	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	20	43440277	43440277	G	A	SNP	TP53TG5	NM_014477	human	genbank	54_36p	-1	validated	missense	c.14	p.A5V	0.475	NULL	NULL	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43655956	43655956	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	19	43655956	43655956	C	A	SNP	RYR1	NM_000540	human	genbank	54_36p	+1	reviewed	silent	c.3865	p.R1289	0.949	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
ENSG00000214820	0	genome.wustl.edu	36	3	44596968	44596968	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	3	44596968	44596968	G	A	SNP	ENSG00000214820	ENST00000399045	human	ensembl	54_36p	-1	known	silent	c.543	p.S181	0.993	superfamily_SSF50729	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_start_codon:no_stop_codon
LOC400036	400036	genome.wustl.edu	36	12	51410697	51410697	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	12	51410697	51410697	C	T	SNP	LOC400036	XR_042304	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.950	-	-	-	pseudogene
PNMAL2	0	genome.wustl.edu	36	19	51690482	51690482	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	19	51690482	51690482	C	T	SNP	PNMAL2	NM_020709	human	genbank	54_36p	-1	validated	silent	c.81	p.P27	0.021	NULL	NULL	-	no_errors
MIRN524	0	genome.wustl.edu	36	19	58906082	58906082	+	RNA	SNP	C	G	G	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	19	58906082	58906082	C	G	SNP	MIRN524	ENST00000385242	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
CHD7	55636	genome.wustl.edu	36	8	61913228	61913228	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	8	61913228	61913228	C	T	SNP	CHD7	NM_017780	human	genbank	54_36p	+1	reviewed	nonsense	c.4393	p.R1465*	0.917	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
LOC647262	647262	genome.wustl.edu	36	13	63219294	63219294	+	Silent	SNP	T	C	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	13	63219294	63219294	T	C	SNP	LOC647262	XM_934622	human	genbank	54_36p	+1	model	silent	c.276	p.F92	0.983	NULL	NULL	-	no_errors
THOC7	80145	genome.wustl.edu	36	3	63799111	63799111	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	3	63799111	63799111	T	A	SNP	THOC7	NM_025075	human	genbank	54_36p	-1	validated	missense	c.242	p.Y81F	1.000	HMMPfam_THOC7	HMMPfam_THOC7	-	no_errors
CNOT2	4848	genome.wustl.edu	36	12	68990990	68990990	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	12	68990990	68990990	G	T	SNP	CNOT2	NM_014515	human	genbank	54_36p	+1	provisional	missense	c.97	p.V33F	1.000	NULL	HMMPfam_NOT2_3_5	-	no_errors
GOLGA6B	55889	genome.wustl.edu	36	15	70741851	70741851	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	15	70741851	70741851	T	C	SNP	GOLGA6B	ENST00000268079	human	ensembl	54_36p	+1	known	missense	c.1052	p.V351A	0.441	NULL	NULL	-	no_errors
RAB11FIP5	26056	genome.wustl.edu	36	2	73156728	73156728	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	2	73156728	73156728	G	A	SNP	RAB11FIP5	NM_015470	human	genbank	54_36p	-1	validated	silent	c.1659	p.S553	1.000	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_RBD-FIP	-	no_errors
SCAPER	49855	genome.wustl.edu	36	15	74844398	74844398	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	15	74844398	74844398	G	A	SNP	SCAPER	NM_020843	human	genbank	54_36p	-1	validated	missense	c.1681	p.R561C	1.000	NULL	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
C10orf55	414236	genome.wustl.edu	36	10	75341461	75341461	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	10	75341461	75341461	G	A	SNP	C10orf55	NM_001001791	human	genbank	54_36p	-1	predicted	silent	c.372	p.T124	0.003	NULL	NULL	-	no_errors
LOC642546	0	genome.wustl.edu	36	X	79715734	79715734	+	RNA	SNP	T	A	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	X	79715734	79715734	T	A	SNP	LOC642546	XR_038841	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
ZAN	7455	genome.wustl.edu	36	7	100188266	100188266	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	7	100188266	100188266	C	A	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	+1	known	missense	c.2602	p.P868T	0.000	NULL	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Serine proterase inhibitors,HMMPfam_TIL,PatternScan_EGF_2,HMMSmart_SM00215,HMMPfam_TIL_assoc,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,HMMSmart_SM00181,HMMSmart_SM00214,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_1	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100523995	100523995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	13	100523995	100523995	G	A	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4139	p.T1380I	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
FGF14	2259	genome.wustl.edu	36	13	101173269	101173269	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	13	101173269	101173269	C	T	SNP	FGF14	NM_175929	human	genbank	54_36p	-1	reviewed	silent	c.672	p.P224	1.000	NULL	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
KIAA1324	57535	genome.wustl.edu	36	1	109516092	109516092	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	109516092	109516092	G	C	SNP	KIAA1324	NM_020775	human	genbank	54_36p	+1	validated	silent	c.549	p.L183	0.998	superfamily_Growth factor receptor domain	superfamily_Growth factor receptor domain,superfamily_Mannose 6-phosphate receptor domain	-	no_errors
SYCP1	6847	genome.wustl.edu	36	1	115231830	115231830	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	115231830	115231830	T	A	SNP	SYCP1	NM_003176	human	genbank	54_36p	+1	validated	missense	c.1251	p.S417R	0.997	HMMPfam_SCP-1	HMMPfam_SCP-1	-	no_errors
C5	727	genome.wustl.edu	36	9	122791785	122791785	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	9	122791785	122791785	C	T	SNP	C5	NM_001735	human	genbank	54_36p	-1	reviewed	silent	c.3036	p.L1012	1.000	superfamily_Terp_cyc_toroid	PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors
KPNA1	3836	genome.wustl.edu	36	3	123651171	123651171	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	3	123651171	123651171	T	C	SNP	KPNA1	NM_002264	human	genbank	54_36p	-1	reviewed	missense	c.857	p.N286S	1.000	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	125272298	125272298	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	2	125272298	125272298	G	T	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	+1	reviewed	missense	c.3145	p.A1049S	0.438	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2	PatternScan_FA58C_1,PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C	-	no_errors
ENG	2022	genome.wustl.edu	36	9	129631922	129631922	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	9	129631922	129631922	C	T	SNP	ENG	NM_000118	human	genbank	54_36p	-1	reviewed	silent	c.225	p.P75	0.007	NULL	HMMPfam_Zona_pellucida	-	no_errors
LOC389053	389053	genome.wustl.edu	36	2	136674109	136674109	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	2	136674109	136674109	G	A	SNP	LOC389053	XR_017204	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
CYP11B2	1585	genome.wustl.edu	36	8	143995505	143995505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	8	143995505	143995505	G	A	SNP	CYP11B2	NM_000498	human	genbank	54_36p	-1	reviewed	missense	c.367	p.R123C	0.799	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
GPR89B	51463	genome.wustl.edu	36	1	145875372	145875372	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	145875372	145875372	T	C	SNP	GPR89B	NM_016334	human	genbank	54_36p	+1	validated	missense	c.50	p.F17S	1.000	NULL	NULL	-	no_errors
FMNL2	114793	genome.wustl.edu	36	2	153193270	153193270	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	2	153193270	153193270	G	T	SNP	FMNL2	NM_052905	human	genbank	54_36p	+1	reviewed	nonsense	c.2377	p.E793*	0.980	superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors
INO80D	54891	genome.wustl.edu	36	2	206578319	206578319	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	2	206578319	206578319	C	A	SNP	INO80D	NM_017759	human	genbank	54_36p	-1	validated	missense	c.2102	p.G701V	1.000	NULL	NULL	-	no_errors
ZDBF2	57683	genome.wustl.edu	36	2	206883615	206883615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	2	206883615	206883615	C	T	SNP	ZDBF2	NM_020923	human	genbank	54_36p	+1	validated	missense	c.6118	p.R2040W	0.000	NULL	HMMPfam_zf-DBF	-	no_errors
TSNAX	7257	genome.wustl.edu	36	1	229739642	229739642	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	229739642	229739642	G	A	SNP	TSNAX	NM_005999	human	genbank	54_36p	+1	reviewed	missense	c.182	p.R61Q	1.000	superfamily_Translin,HMMPfam_Translin	superfamily_Translin,HMMPfam_Translin	-	no_errors
SP100	6672	genome.wustl.edu	36	2	231112268	231112268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	2	231112268	231112268	C	T	SNP	SP100	NM_001080391	human	genbank	54_36p	+1	validated	missense	c.2137	p.R713W	0.000	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
ERO1LB	56605	genome.wustl.edu	36	1	234456249	234456249	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	1	234456249	234456249	T	G	SNP	ERO1LB	NM_019891	human	genbank	54_36p	-1	provisional	missense	c.995	p.N332T	0.995	superfamily_ERO1,HMMPfam_ERO1	superfamily_ERO1,HMMPfam_ERO1	-	no_errors
LOC100134144	0	genome.wustl.edu	36	17	1892545	1892546	+	Frame_Shift_Ins	INS	-	-	CTCT	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	17	1892545	1892546	-	CTCT	INS	LOC100134144	XM_001717999	human	genbank	54_36p	-1	model	frame_shift_ins	c.956_955	p.G319fs	0.000:0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
RAI1	10743	genome.wustl.edu	36	17	17637827	17637827	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	17	17637827	17637827	G	-	DEL	RAI1	NM_030665	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.840	p.Q280fs	0.999	NULL	HMMSmart_SM00249	(deletion:cds_exon[17636988,17642552])	no_errors
FANCM	57697	genome.wustl.edu	36	14	44703486	44703498	+	Frame_Shift_Del	DEL	GTTATTATCCTTT	GTTATTATCCTTT	-	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	GTTATTATCCTTT	GTTATTATCCTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	14	44703486	44703498	GTTATTATCCTTT	-	DEL	FANCM	NM_020937	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1756_1768	p.V586fs	1.000:1.000:0.995:1.000:1.000:0.999:1.000:1.000:0.973:0.988:0.979:0.227:0.203	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Restriction endonuclease-like,HMMPfam_ERCC4,superfamily_RuvA domain 2-like	(deletion:cds_exon[44703312,44703518])	no_errors
C14orf101	54916	genome.wustl.edu	36	14	56171394	56171407	+	Frame_Shift_Del	DEL	TGTGGCCAATGAAG	TGTGGCCAATGAAG	-	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	TGTGGCCAATGAAG	TGTGGCCAATGAAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	14	56171394	56171407	TGTGGCCAATGAAG	-	DEL	C14orf101	NM_017799	human	genbank	54_36p	+1	validated	frame_shift_del	c.1749_1762	p.V584fs	0.995:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.995:1.000	NULL	NULL	(deletion:cds_exon[56171370,56171423])	no_errors
STAG3	10734	genome.wustl.edu	36	7	99659775	99659780	+	Frame_Shift_Del	DEL	TTTTTT	TTTTTT	-	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	TTTTTT	TTTTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	7	99659775	99659780	TTTTTT	-	DEL	STAG3	ENST00000394018	human	ensembl	54_36p	+1	known	frame_shift_del	c.3672_3675	p.D1224fs	0.113:0.101:0.089:0.076	NULL	superfamily_ARM repeat,HMMPfam_STAG	(deletion:cds_exon[99659773,99659778], flank[99659779,99709778])	no_stop_codon
HNRNPA0	10949	genome.wustl.edu	36	5	137116844	137116845	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	5	137116844	137116845	-	GCT	INS	HNRNPA0	NM_006805	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.811_810	p.270in_frame_insS	0.989:0.989	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
MLLT4	4301	genome.wustl.edu	36	6	168041994	168041995	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-29-1697-01A-01W-0633-09	TCGA-29-1697-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c8fb542e-1713-4e61-84ac-6b9f85288da0	84b432ab-5c6b-4e47-a516-444cb68b5455	6	168041994	168041995	-	G	INS	MLLT4	NM_001040001	human	genbank	54_36p	+1	validated	frame_shift_ins	c.1575_1576	p.I526fs	0.994:1.000	NULL	HMMPfam_RA,HMMSmart_RA,superfamily_SSF54236,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
