Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND3	4537	genome.wustl.edu	36	MT	10072	10072	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	MT	10072	10072	T	C	SNP	MT-ND3	ENST00000361227	human	ensembl	54_36p	+1	known	silent	c.13	p.L5	NULL	NULL	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region
MT-ND4	4538	genome.wustl.edu	36	MT	11788	11788	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	MT	11788	11788	T	C	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	missense	c.1028	p.I343T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
MIER2	54531	genome.wustl.edu	36	19	285516	285516	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	19	285516	285516	G	A	SNP	MIER2	NM_017550	human	genbank	54_36p	-1	provisional	nonsense	c.127	p.Q43*	1.000	NULL	HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
VPS53	55275	genome.wustl.edu	36	17	505905	505905	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	505905	505905	G	A	SNP	VPS53	NM_018289	human	genbank	54_36p	-1	reviewed	silent	c.324	p.H108	0.996	HMMPfam_Vps53_N	HMMPfam_Vps53_N	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1222407	1222407	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	1222407	1222407	T	C	SNP	MUC5B	NM_002458	human	genbank	54_36p	+1	validated	missense	c.7730	p.V2577A	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors
CLPTM1L	81037	genome.wustl.edu	36	5	1388185	1388185	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	5	1388185	1388185	G	A	SNP	CLPTM1L	NM_030782	human	genbank	54_36p	-1	provisional	silent	c.783	p.S261	0.997	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors
LOC100134144	0	genome.wustl.edu	36	17	1861642	1861642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	1861642	1861642	C	T	SNP	LOC100134144	XM_001717999	human	genbank	54_36p	-1	model	missense	c.6719	p.R2240H	0.024	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC387825	387825	genome.wustl.edu	36	12	3051467	3051467	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	12	3051467	3051467	G	A	SNP	LOC387825	XR_016298	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.973	-	-	-	pseudogene
NOP2	4839	genome.wustl.edu	36	12	6536883	6536883	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	12	6536883	6536883	G	T	SNP	NOP2	NM_001033714	human	genbank	54_36p	-1	validated	nonsense	c.1964	p.S655*	0.102	NULL	superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN,HMMPfam_P120R	-	no_errors
ACRBP	84519	genome.wustl.edu	36	12	6619523	6619523	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	12	6619523	6619523	C	T	SNP	ACRBP	NM_032489	human	genbank	54_36p	-1	reviewed	silent	c.1389	p.E463	0.980	superfamily_SSF100895	HMMPfam_PBP_sp32,superfamily_SSF100895,HMMSmart_KAZAL	-	no_errors
ACAP1	9744	genome.wustl.edu	36	17	7191085	7191085	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	7191085	7191085	C	T	SNP	ACAP1	NM_014716	human	genbank	54_36p	+1	validated	silent	c.1143	p.H381	0.091	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518997	7518997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	7518997	7518997	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.577	p.H193Y	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
USP6NL	9712	genome.wustl.edu	36	10	11545534	11545534	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	10	11545534	11545534	C	A	SNP	USP6NL	NM_001080491	human	genbank	54_36p	-1	validated	missense	c.1450	p.A484S	0.988	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
GREB1	9687	genome.wustl.edu	36	2	11678484	11678484	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	2	11678484	11678484	C	T	SNP	GREB1	NM_014668	human	genbank	54_36p	+1	reviewed	silent	c.4047	p.I1349	0.987	NULL	NULL	-	no_errors
KLHDC7A	127707	genome.wustl.edu	36	1	18681237	18681237	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	1	18681237	18681237	C	G	SNP	KLHDC7A	NM_152375	human	genbank	54_36p	+1	validated	missense	c.1175	p.P392R	0.001	NULL	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors
RAB36	9609	genome.wustl.edu	36	22	21825234	21825234	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	22	21825234	21825234	T	G	SNP	RAB36	NM_004914	human	genbank	54_36p	+1	validated	missense	c.440	p.V147G	0.984	HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
DSG4	147409	genome.wustl.edu	36	18	27222879	27222879	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	18	27222879	27222879	G	T	SNP	DSG4	NM_177986	human	genbank	54_36p	+1	validated	missense	c.417	p.R139S	0.733	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
KIAA0556	23247	genome.wustl.edu	36	16	27696535	27696535	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	16	27696535	27696535	C	A	SNP	KIAA0556	NM_015202	human	genbank	54_36p	+1	validated	missense	c.4655	p.T1552N	1.000	NULL	superfamily_Galactose-binding domain-like,PatternScan_AKH	-	no_errors
IL1RAPL1	11141	genome.wustl.edu	36	X	29848124	29848124	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	X	29848124	29848124	A	C	SNP	IL1RAPL1	NM_014271	human	genbank	54_36p	+1	reviewed	missense	c.1049	p.H350P	0.995	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
MSH5	4439	genome.wustl.edu	36	6	31835929	31835929	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	6	31835929	31835929	T	A	SNP	MSH5	NM_025259	human	genbank	54_36p	+1	reviewed	missense	c.1820	p.I607N	1.000	HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac	HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors
BAZ1A	11177	genome.wustl.edu	36	14	34297727	34297727	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	14	34297727	34297727	T	C	SNP	BAZ1A	NM_013448	human	genbank	54_36p	-1	validated	silent	c.4320	p.Q1440	0.997	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
RAPGEFL1	51195	genome.wustl.edu	36	17	35598744	35598744	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	35598744	35598744	G	T	SNP	RAPGEFL1	NM_016339	human	genbank	54_36p	+1	validated	missense	c.316	p.G106C	1.000	superfamily_Ras_GEF	superfamily_Ras_GEF,HMMPfam_RA,HMMSmart_RasGEF,HMMPfam_RasGEF	-	no_errors
COMMD9	29099	genome.wustl.edu	36	11	36252898	36252898	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	36252898	36252898	T	G	SNP	COMMD9	NM_014186	human	genbank	54_36p	-1	validated	missense	c.457	p.I153L	1.000	HMMPfam_HCaRG	HMMPfam_HCaRG	-	no_errors
HSPB9	94086	genome.wustl.edu	36	17	37528853	37528853	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	37528853	37528853	G	A	SNP	HSPB9	NM_033194	human	genbank	54_36p	+1	provisional	silent	c.459	p.K153	0.000	NULL	superfamily_HSP20-like chaperones,HMMPfam_HSP20	-	no_errors
PAK6	56924	genome.wustl.edu	36	15	38355425	38355425	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	15	38355425	38355425	C	T	SNP	PAK6	NM_020168	human	genbank	54_36p	+1	reviewed	silent	c.1884	p.S628	0.999	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	HMMPfam_PBD,HMMSmart_SM00285,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
KIAA0754	643314	genome.wustl.edu	36	1	39648960	39648960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	1	39648960	39648960	G	A	SNP	KIAA0754	NM_015038	human	genbank	54_36p	+1	predicted	missense	c.436	p.E146K	1.000	NULL	NULL	-	no_errors
ENSG00000222708	0	genome.wustl.edu	36	1	41043303	41043303	+	RNA	SNP	C	T	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	1	41043303	41043303	C	T	SNP	ENSG00000222708	ENST00000410776	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.999	-	-	-	no_errors
TBRG4	9238	genome.wustl.edu	36	7	45111776	45111776	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	7	45111776	45111776	C	T	SNP	TBRG4	NM_004749	human	genbank	54_36p	-1	validated	missense	c.524	p.R175H	0.993	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
C11orf49	79096	genome.wustl.edu	36	11	46914949	46914949	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	46914949	46914949	G	T	SNP	C11orf49	NM_001003677	human	genbank	54_36p	+1	validated	missense	c.17	p.R6L	1.000	NULL	NULL	-	no_errors
ERCC6	2074	genome.wustl.edu	36	10	50371248	50371248	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	10	50371248	50371248	C	T	SNP	ERCC6	NM_000124	human	genbank	54_36p	-1	reviewed	nonsense	c.1742	p.W581*	1.000	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
KRT3	3850	genome.wustl.edu	36	12	51475713	51475713	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	12	51475713	51475713	C	T	SNP	KRT3	NM_057088	human	genbank	54_36p	-1	reviewed	silent	c.381	p.G127	0.000	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
SCAF1	58506	genome.wustl.edu	36	19	54846157	54846157	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	19	54846157	54846157	C	A	SNP	SCAF1	NM_021228	human	genbank	54_36p	+1	provisional	silent	c.699	p.P233	1.000	NULL	NULL	-	no_errors
SIGLEC7	27036	genome.wustl.edu	36	19	56340976	56340976	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	19	56340976	56340976	T	C	SNP	SIGLEC7	NM_014385	human	genbank	54_36p	+1	validated	silent	c.813	p.S271	0.166	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
SLMAP	7871	genome.wustl.edu	36	3	57822730	57822730	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	57822730	57822730	T	A	SNP	SLMAP	NM_007159	human	genbank	54_36p	+1	validated	missense	c.843	p.N281K	1.000	NULL	superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_Prefoldin_2,PatternScan_FETUIN_2	-	no_errors
FLNB	2317	genome.wustl.edu	36	3	57969549	57969549	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	57969549	57969549	G	T	SNP	FLNB	NM_001457	human	genbank	54_36p	+1	validated	missense	c.218	p.R73L	1.000	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	-	no_errors
SPTBN2	6712	genome.wustl.edu	36	11	66212235	66212235	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	66212235	66212235	A	T	SNP	SPTBN2	NM_006946	human	genbank	54_36p	-1	validated	missense	c.6355	p.S2119T	0.000	HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
C17orf54	283982	genome.wustl.edu	36	17	69331455	69331455	+	Silent	SNP	G	C	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	69331455	69331455	G	C	SNP	C17orf54	ENST00000321800	human	ensembl	54_36p	-1	known	silent	c.108	p.L36	0.000	NULL	NULL	-	no_errors
SMOC1	64093	genome.wustl.edu	36	14	69489910	69489910	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	14	69489910	69489910	C	T	SNP	SMOC1	NM_001034852	human	genbank	54_36p	+1	validated	missense	c.286	p.R96C	1.000	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
GGA3	23163	genome.wustl.edu	36	17	70751241	70751241	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	17	70751241	70751241	C	A	SNP	GGA3	NM_138619	human	genbank	54_36p	-1	reviewed	silent	c.306	p.L102	1.000	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,superfamily_GAT-like domain,HMMPfam_GAT,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809	-	no_errors
NUMA1	4926	genome.wustl.edu	36	11	71401906	71401906	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	71401906	71401906	C	T	SNP	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	missense	c.4291	p.A1431T	0.981	NULL	superfamily_Prefoldin	-	no_errors
XIST	7503	genome.wustl.edu	36	X	72979737	72979737	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	X	72979737	72979737	G	T	SNP	XIST	NR_001564	human	genbank	54_36p	-1	reviewed	rna	NULL	NULL	0.007	-	-	-	no_errors
CYB5R4	51167	genome.wustl.edu	36	6	84702682	84702682	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	6	84702682	84702682	T	C	SNP	CYB5R4	NM_016230	human	genbank	54_36p	+1	validated	missense	c.976	p.Y326H	1.000	superfamily_Riboflavin_synthase_like_b-brl,HMMPfam_FAD_binding_6	superfamily_Cyt_B5,HMMPfam_Cyt-b5,PatternScan_CYTOCHROME_B5_1,superfamily_HSP20_chap,HMMPfam_CS,superfamily_Riboflavin_synthase_like_b-brl,HMMPfam_FAD_binding_6,superfamily_SSF52343,HMMPfam_NAD_binding_1	-	no_errors
LDB3	11155	genome.wustl.edu	36	10	88436876	88436876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	10	88436876	88436876	G	A	SNP	LDB3	NM_001080114	human	genbank	54_36p	+1	reviewed	missense	c.415	p.E139K	1.000	NULL	HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ,HMMSmart_ZM,superfamily_SSF57716,HMMSmart_LIM,HMMPfam_LIM,PatternScan_LIM_DOMAIN_1	-	no_errors
FGD6	55785	genome.wustl.edu	36	12	94009713	94009713	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	12	94009713	94009713	C	G	SNP	FGD6	NM_018351	human	genbank	54_36p	-1	validated	missense	c.3751	p.V1251L	1.000	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CLMN	79789	genome.wustl.edu	36	14	94739346	94739346	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	14	94739346	94739346	T	A	SNP	CLMN	NM_024734	human	genbank	54_36p	-1	validated	missense	c.2093	p.E698V	0.661	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2	-	no_errors
EMID2	136227	genome.wustl.edu	36	7	100975430	100975430	+	Silent	SNP	C	G	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	7	100975430	100975430	C	G	SNP	EMID2	ENST00000397927	human	ensembl	54_36p	+1	known	silent	c.795	p.G265	0.692	NULL	HMMPfam_EMI,HMMPfam_Collagen	-	no_errors
ISCU	23479	genome.wustl.edu	36	12	107483326	107483326	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	12	107483326	107483326	A	C	SNP	ISCU	NM_014301	human	genbank	54_36p	+1	reviewed	missense	c.254	p.K85T	1.000	superfamily_SSF82649,HMMPfam_NifU_N	superfamily_SSF82649,HMMPfam_NifU_N	-	no_errors
RGPD4	285190	genome.wustl.edu	36	2	107844625	107844625	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	2	107844625	107844625	G	A	SNP	RGPD4	ENST00000354986	human	ensembl	54_36p	+1	known	silent	c.2202	p.K734	0.975	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
DCX	1641	genome.wustl.edu	36	X	110540060	110540060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	X	110540060	110540060	C	T	SNP	DCX	NM_000555	human	genbank	54_36p	-1	reviewed	missense	c.466	p.D156N	1.000	superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX	superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX	-	no_errors
LOC389141	389141	genome.wustl.edu	36	3	111883964	111883964	+	RNA	SNP	A	A	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	111883964	111883964	A	G	SNP	LOC389141	XR_016945	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TFDP1	7027	genome.wustl.edu	36	13	113336337	113336337	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	13	113336337	113336337	T	C	SNP	TFDP1	NM_007111	human	genbank	54_36p	+1	reviewed	silent	c.606	p.C202	0.999	HMMPfam_DP	HMMPfam_E2F_TDP,superfamily_SSF46785,HMMPfam_DP	-	no_errors
PTGS1	5742	genome.wustl.edu	36	9	124194589	124194589	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	9	124194589	124194589	C	T	SNP	PTGS1	NM_000962	human	genbank	54_36p	+1	reviewed	missense	c.1745	p.P582L	0.992	superfamily_Heme-dependent peroxidases	superfamily_EGF/Laminin,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	-	no_errors
OR1L4	254973	genome.wustl.edu	36	9	124526295	124526295	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	9	124526295	124526295	T	C	SNP	OR1L4	NM_001005235	human	genbank	54_36p	+1	provisional	missense	c.206	p.F69S	0.250	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
SAP130	79595	genome.wustl.edu	36	2	128416062	128416062	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	2	128416062	128416062	C	G	SNP	SAP130	NM_024545	human	genbank	54_36p	-1	validated	missense	c.3135	p.K1045N	0.992	NULL	NULL	-	no_errors
ZNF79	7633	genome.wustl.edu	36	9	129246411	129246411	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	9	129246411	129246411	A	G	SNP	ZNF79	NM_007135	human	genbank	54_36p	+1	validated	missense	c.611	p.Y204C	0.008	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
C9orf114	51490	genome.wustl.edu	36	9	130629261	130629261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	9	130629261	130629261	G	A	SNP	C9orf114	NM_016390	human	genbank	54_36p	-1	validated	missense	c.239	p.P80L	0.999	superfamily_SSF75217,HMMPfam_DUF171	superfamily_SSF75217,HMMPfam_DUF171,superfamily_Nucleic_acid_OB	-	no_errors
uc003vxc.2	0	genome.wustl.edu	36	7	141598568	141598568	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	7	141598568	141598568	T	A	SNP	uc003vxc.2	ENST00000304182	human	ensembl	54_36p	-1	known	missense	c.677	p.K226I	0.536	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors
GK5	256356	genome.wustl.edu	36	3	143400445	143400445	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	143400445	143400445	T	C	SNP	GK5	NM_001039547	human	genbank	54_36p	-1	validated	silent	c.432	p.R144	0.033	superfamily_Actin-like ATPase domain,HMMPfam_FGGY_N	superfamily_Actin-like ATPase domain,HMMPfam_FGGY_N,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2	-	no_errors
CP	1356	genome.wustl.edu	36	3	150409690	150409690	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	150409690	150409690	T	C	SNP	CP	NM_000096	human	genbank	54_36p	-1	reviewed	missense	c.779	p.Y260C	1.000	superfamily_Cupredoxins,HMMPfam_Cu-oxidase	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors
PNCK	139728	genome.wustl.edu	36	X	152591429	152591429	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	X	152591429	152591429	G	A	SNP	PNCK	ENST00000393831	human	ensembl	54_36p	-1	known	missense	c.73	p.P25S	0.004	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
RPL22L1	200916	genome.wustl.edu	36	3	172070644	172070644	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	172070644	172070644	G	A	SNP	RPL22L1	NM_001099645	human	genbank	54_36p	-1	validated	missense	c.7	p.P3S	1.000	NULL	HMMPfam_Ribosomal_L22e	-	no_errors
LOC131054	131054	genome.wustl.edu	36	3	181439734	181439734	+	RNA	SNP	A	C	C	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	181439734	181439734	A	C	SNP	LOC131054	XR_017452	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.001	-	-	-	pseudogene
USH2A	7399	genome.wustl.edu	36	1	213868952	213868952	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	1	213868952	213868952	G	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.15346	p.R5116C	0.710	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219608517	219608517	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	2	219608517	219608517	C	A	SNP	CCDC108	NM_194302	human	genbank	54_36p	-1	provisional	missense	c.471	p.E157D	0.440	NULL	PatternScan_MGMT,superfamily_PapD-like	-	no_errors
PSEN2	5664	genome.wustl.edu	36	1	225143349	225143349	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	1	225143349	225143349	A	T	SNP	PSEN2	NM_000447	human	genbank	54_36p	+1	reviewed	missense	c.763	p.I255F	1.000	HMMPfam_Presenilin,HMMSmart_SM00730	HMMPfam_Presenilin,HMMSmart_SM00730	-	no_errors
RGS7	6000	genome.wustl.edu	36	1	239043628	239043628	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	1	239043628	239043628	T	G	SNP	RGS7	NM_002924	human	genbank	54_36p	-1	validated	missense	c.869	p.Y290S	0.998	superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL	superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	-	no_errors
COPB1	1315	genome.wustl.edu	36	11	14457810	14457812	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	GTT	GTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	14457810	14457812	GTT	-	DEL	COPB1	NM_016451	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1239_1237	p.N413in_frame_del	1.000:1.000:1.000	HMMPfam_Adaptin_N,superfamily_ARM-type_fold	HMMPfam_Adaptin_N,superfamily_ARM-type_fold,HMMPfam_Coatamer_beta_C	(deletion:cds_exon[14457691,14457836])	no_errors
LOC391322	391322	genome.wustl.edu	36	22	22703826	22703829	+	Frame_Shift_Del	DEL	CAAT	CAAT	-	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	CAAT	CAAT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	22	22703826	22703829	CAAT	-	DEL	LOC391322	XM_001726974	human	genbank	54_36p	+1	model	frame_shift_del	c.364_367	p.E124fs	0.005:0.010:0.011:0.013	NULL	HMMPfam_MIF,superfamily_Tautomerase/MIF,PatternScan_MIF	(deletion:cds_exon[22703610,22703873])	no_errors
RNASEH2B	79621	genome.wustl.edu	36	13	50417634	50417640	+	Frame_Shift_Del	DEL	TTTTCTC	TTTTCTC	-	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	TTTTCTC	TTTTCTC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	13	50417634	50417640	TTTTCTC	-	DEL	RNASEH2B	NM_024570	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.581_587	p.F194fs	0.995:0.994:0.994:0.991:0.982:0.952:0.498	HMMPfam_RNase_H2-Ydr279	HMMPfam_RNase_H2-Ydr279	(deletion:cds_exon[50417564,50417669])	no_errors
NISCH	11188	genome.wustl.edu	36	3	52500987	52500989	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	GAG	GAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	3	52500987	52500989	GAG	-	DEL	NISCH	NM_007184	human	genbank	54_36p	+1	validated	in_frame_del	c.3964_3966	p.E1324in_frame_del	1.000:1.000:0.996	NULL	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1,PatternScan_CYTOCHROME_P450	(deletion:cds_exon[52500928,52501538])	no_errors
C2CD3	26005	genome.wustl.edu	36	11	73473628	73473629	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	AC	AC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	73473628	73473629	AC	-	DEL	C2CD3	NM_015531	human	genbank	54_36p	-1	validated	frame_shift_del	c.3946_3945	p.Y1316fs	0.925:0.465	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	(deletion:cds_exon[73473574,73473663])	no_errors
C2CD3	26005	genome.wustl.edu	36	11	73473632	73473632	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	11	73473632	73473632	T	-	DEL	C2CD3	NM_015531	human	genbank	54_36p	-1	validated	frame_shift_del	c.3942	p.E1315fs	0.480	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[73473574,73473663])	no_errors
KCNN3	3782	genome.wustl.edu	36	1	153108824	153108826	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-29-1698-01A-01W-0633-09	TCGA-29-1698-10A-01W-0633-09	GCT	GCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13d549f0-e884-484c-9c42-0e030a751d83	7066096f-fff7-4e26-822c-93b3c5d7e795	1	153108824	153108826	GCT	-	DEL	KCNN3	NM_002249	human	genbank	54_36p	-1	reviewed	in_frame_del	c.241_239	p.Q80in_frame_del	0.997:0.989:0.980	NULL	HMMPfam_SK_channel,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_Small-conductance potassium channel,HMMPfam_CaMBD	(deletion:cds_exon[153108132,153109064])	no_errors
