Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ENSG00000210112	0	genome.wustl.edu	36	MT	4419	4419	+	RNA	SNP	T	C	C	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	MT	4419	4419	T	C	SNP	ENSG00000210112	ENST00000387377	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
MT-ND3	4537	genome.wustl.edu	36	MT	10174	10174	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	MT	10174	10174	T	C	SNP	MT-ND3	ENST00000361227	human	ensembl	54_36p	+1	known	missense	c.115	p.C39R	NULL	HMMPfam_Oxidored_q4	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region
MT-ND4	4538	genome.wustl.edu	36	MT	11149	11149	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	MT	11149	11149	T	G	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	missense	c.389	p.L130W	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
C9orf66	157983	genome.wustl.edu	36	9	204675	204675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	9	204675	204675	C	T	SNP	C9orf66	NM_152569	human	genbank	54_36p	-1	validated	missense	c.722	p.G241E	0.258	NULL	NULL	-	no_errors
MMEL1	79258	genome.wustl.edu	36	1	2515216	2515216	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	2515216	2515216	G	A	SNP	MMEL1	NM_033467	human	genbank	54_36p	-1	reviewed	silent	c.1737	p.I579	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
TRPV3	162514	genome.wustl.edu	36	17	3376921	3376921	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	17	3376921	3376921	C	T	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	silent	c.1554	p.S518	0.956	HMMPfam_Ion_trans	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519167	7519167	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	17	7519167	7519167	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.488	p.Y163C	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
PFAS	5198	genome.wustl.edu	36	17	8110924	8110924	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	17	8110924	8110924	G	T	SNP	PFAS	NM_012393	human	genbank	54_36p	+1	reviewed	missense	c.2950	p.A984S	0.000	superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C	superfamily_PurS-like,superfamily_FGAM synthase PurL linker domain,superfamily_PurM N-terminal domain-like,HMMPfam_AIRS,superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C,superfamily_Class I glutamine amidotransferase-like	-	no_errors
ARHGEF15	22899	genome.wustl.edu	36	17	8156289	8156289	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	17	8156289	8156289	C	T	SNP	ARHGEF15	NM_173728	human	genbank	54_36p	+1	reviewed	silent	c.207	p.S69	0.811	NULL	PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729	-	no_errors
ZNF439	90594	genome.wustl.edu	36	19	11838141	11838141	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	19	11838141	11838141	C	G	SNP	ZNF439	NM_152262	human	genbank	54_36p	+1	provisional	missense	c.170	p.S57C	0.250	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
HIRA	7290	genome.wustl.edu	36	22	17721597	17721597	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	22	17721597	17721597	T	A	SNP	HIRA	NM_003325	human	genbank	54_36p	-1	reviewed	missense	c.2606	p.D869V	1.000	HMMPfam_Hira	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_HIRA_B,HMMPfam_Hira	-	no_errors
RPGRIP1	57096	genome.wustl.edu	36	14	20862739	20862739	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	14	20862739	20862739	G	C	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	+1	reviewed	missense	c.1885	p.E629Q	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors
PRKCB	5579	genome.wustl.edu	36	16	23756222	23756222	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	16	23756222	23756222	T	A	SNP	PRKCB	NM_002738	human	genbank	54_36p	+1	reviewed	missense	c.199	p.C67S	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
ASXL1	171023	genome.wustl.edu	36	20	30480885	30480885	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	20	30480885	30480885	A	G	SNP	ASXL1	NM_015338	human	genbank	54_36p	+1	reviewed	silent	c.555	p.E185	1.000	NULL	NULL	-	no_errors
ZEB1	6935	genome.wustl.edu	36	10	31850585	31850585	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	10	31850585	31850585	C	T	SNP	ZEB1	NM_030751	human	genbank	54_36p	+1	validated	silent	c.2316	p.C772	0.999	NULL	PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX	-	no_errors
LOC647211	647211	genome.wustl.edu	36	16	33287505	33287505	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	16	33287505	33287505	G	A	SNP	LOC647211	XR_017499	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.971	-	-	-	pseudogene
LOC100132267	0	genome.wustl.edu	36	16	33844298	33844298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	16	33844298	33844298	G	A	SNP	LOC100132267	XM_001718197	human	genbank	54_36p	-1	model	missense	c.257	p.P86L	0.072	NULL	NULL	-	no_errors
LOC158381	158381	genome.wustl.edu	36	9	35439788	35439788	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	9	35439788	35439788	C	T	SNP	LOC158381	NR_003582	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
AOC3	8639	genome.wustl.edu	36	17	38257871	38257871	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	17	38257871	38257871	C	T	SNP	AOC3	NM_003734	human	genbank	54_36p	+1	reviewed	nonsense	c.985	p.R329*	0.534	superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxid	superfamily_Cu_amine_oxidase_N-reg,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2	-	no_errors
SFRS7	6432	genome.wustl.edu	36	2	38830758	38830758	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	2	38830758	38830758	T	G	SNP	SFRS7	NM_001031684	human	genbank	54_36p	-1	validated	missense	c.111	p.L37F	0.983	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_zf-CCHC	-	no_errors
KIF18B	146909	genome.wustl.edu	36	17	40364523	40364523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	17	40364523	40364523	C	T	SNP	KIF18B	NM_001080443	human	genbank	54_36p	-1	provisional	missense	c.1526	p.R509Q	0.004	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
CEP27	55142	genome.wustl.edu	36	15	40643344	40643344	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	15	40643344	40643344	A	T	SNP	CEP27	NM_018097	human	genbank	54_36p	+1	validated	missense	c.495	p.K165N	1.000	NULL	NULL	-	no_errors
ANK1	286	genome.wustl.edu	36	8	41690849	41690849	+	Silent	SNP	G	T	T	rs61753679	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	8	41690849	41690849	G	T	SNP	ANK1	NM_020476	human	genbank	54_36p	-1	reviewed	silent	c.1782	p.S594	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death	-	no_errors
LOC342892	342892	genome.wustl.edu	36	19	41930702	41930702	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	19	41930702	41930702	T	A	SNP	LOC342892	XM_001720258	human	genbank	54_36p	-1	model	missense	c.3074	p.H1025L	0.043	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	pseudogene
CDC20	991	genome.wustl.edu	36	1	43601299	43601299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	43601299	43601299	G	A	SNP	CDC20	NM_001255	human	genbank	54_36p	+1	reviewed	missense	c.1412	p.R471H	1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ABCA13	154664	genome.wustl.edu	36	7	48420721	48420721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	7	48420721	48420721	C	T	SNP	ABCA13	NM_152701	human	genbank	54_36p	+1	reviewed	missense	c.11966	p.A3989V	0.271	NULL	PatternScan_SERPIN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
EMB	133418	genome.wustl.edu	36	5	49742549	49742549	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	5	49742549	49742549	T	C	SNP	EMB	NM_198449	human	genbank	54_36p	-1	reviewed	missense	c.391	p.I131V	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
AGAP6	0	genome.wustl.edu	36	10	51418563	51418563	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	10	51418563	51418563	G	A	SNP	AGAP6	ENST00000374056	human	ensembl	54_36p	+1	known	missense	c.82	p.E28K	0.099	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
PFDN5	5204	genome.wustl.edu	36	12	51978097	51978097	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	12	51978097	51978097	C	G	SNP	PFDN5	NM_002624	human	genbank	54_36p	+1	reviewed	missense	c.284	p.T95R	1.000	superfamily_Prefoldin,HMMPfam_Prefoldin	superfamily_Prefoldin,HMMPfam_Prefoldin	-	no_errors
KIT	3815	genome.wustl.edu	36	4	55256513	55256513	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	55256513	55256513	G	A	SNP	KIT	NM_000222	human	genbank	54_36p	+1	reviewed	missense	c.146	p.R49H	0.000	superfamily_SSF48726	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PCK1	5105	genome.wustl.edu	36	20	55572821	55572821	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	20	55572821	55572821	G	A	SNP	PCK1	NM_002591	human	genbank	54_36p	+1	reviewed	silent	c.1152	p.T384	0.295	HMMPfam_PEPCK,superfamily_SSF53795	superfamily_PEP_carboxykinase_N,HMMPfam_PEPCK,superfamily_SSF53795,PatternScan_PEPCK_GTP	-	no_errors
TH1L	51497	genome.wustl.edu	36	20	56999762	56999762	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	20	56999762	56999762	A	G	SNP	TH1L	NM_198976	human	genbank	54_36p	+1	reviewed	missense	c.982	p.I328V	1.000	HMMPfam_TH1	HMMPfam_TH1	-	no_errors
SRP72	6731	genome.wustl.edu	36	4	57052412	57052412	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	57052412	57052412	C	A	SNP	SRP72	NM_006947	human	genbank	54_36p	+1	validated	missense	c.1561	p.L521I	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMPfam_SRP72	-	no_errors
RNF111	54778	genome.wustl.edu	36	15	57174275	57174275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	15	57174275	57174275	C	T	SNP	RNF111	NM_017610	human	genbank	54_36p	+1	reviewed	missense	c.2845	p.R949C	1.000	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
ZNF479	90827	genome.wustl.edu	36	7	57192761	57192761	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	7	57192761	57192761	C	T	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	silent	c.303	p.Q101	0.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
SLCO4A1	28231	genome.wustl.edu	36	20	60773709	60773709	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	20	60773709	60773709	C	T	SNP	SLCO4A1	ENST00000342674	human	ensembl	54_36p	+1	known	silent	c.1650	p.P550	0.014	NULL	HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors
HTR1A	3350	genome.wustl.edu	36	5	63292912	63292912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	5	63292912	63292912	C	T	SNP	HTR1A	NM_000524	human	genbank	54_36p	-1	validated	missense	c.391	p.A131T	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
B3GNT1	10678	genome.wustl.edu	36	11	65870605	65870605	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	11	65870605	65870605	C	T	SNP	B3GNT1	NM_006876	human	genbank	54_36p	-1	reviewed	missense	c.988	p.V330M	1.000	NULL	NULL	-	no_errors
TMPRSS11F	389208	genome.wustl.edu	36	4	68620634	68620634	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	68620634	68620634	A	C	SNP	TMPRSS11F	NM_207407	human	genbank	54_36p	-1	validated	splice_site	c.514+2	e5+2	0.997	-	-	-	no_errors
SHANK2	22941	genome.wustl.edu	36	11	70010206	70010206	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	11	70010206	70010206	G	A	SNP	SHANK2	NM_012309	human	genbank	54_36p	-1	reviewed	silent	c.2055	p.N685	1.000	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
MUC7	4589	genome.wustl.edu	36	4	71381870	71381870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	71381870	71381870	G	A	SNP	MUC7	NM_152291	human	genbank	54_36p	+1	reviewed	missense	c.820	p.A274T	0.000	NULL	NULL	-	no_errors
LOC401074	401074	genome.wustl.edu	36	3	75802830	75802830	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	3	75802830	75802830	G	A	SNP	LOC401074	XM_001714392	human	genbank	54_36p	+1	model	missense	c.115	p.V39M	0.000	NULL	NULL	-	no_errors
SH3GL3	6457	genome.wustl.edu	36	15	82028363	82028363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	15	82028363	82028363	C	T	SNP	SH3GL3	NM_003027	human	genbank	54_36p	+1	validated	missense	c.290	p.T97M	0.997	HMMSmart_BAR,HMMPfam_BAR	HMMSmart_BAR,HMMPfam_BAR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors
WDR21C	138009	genome.wustl.edu	36	8	88955205	88955205	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	8	88955205	88955205	G	A	SNP	WDR21C	NM_152418	human	genbank	54_36p	-1	validated	silent	c.111	p.L37	0.032	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
AMOTL1	154810	genome.wustl.edu	36	11	94172257	94172257	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	11	94172257	94172257	G	T	SNP	AMOTL1	NM_130847	human	genbank	54_36p	+1	reviewed	missense	c.253	p.V85L	1.000	NULL	NULL	-	no_errors
UNG	7374	genome.wustl.edu	36	12	108021451	108021451	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	12	108021451	108021451	C	G	SNP	UNG	NM_080911	human	genbank	54_36p	+1	reviewed	silent	c.414	p.T138	0.991	superfamily_DNA glycosylase	superfamily_DNA glycosylase,HMMPfam_UDG,PatternScan_U_DNA_GLYCOSYLASE	-	no_errors
MVK	4598	genome.wustl.edu	36	12	108498254	108498254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	12	108498254	108498254	G	A	SNP	MVK	NM_000431	human	genbank	54_36p	+1	reviewed	silent	c.147	p.V49	0.070	superfamily_Ribosomal protein S5 domain 2-like	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_GHMP_kinases_N,PatternScan_GHMP_KINASES_ATP,superfamily_GHMP Kinase C-terminal domain,HMMPfam_GHMP_kinases_C	-	no_errors
SH3RF3	344558	genome.wustl.edu	36	2	109432349	109432349	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	2	109432349	109432349	G	A	SNP	SH3RF3	NM_001099289	human	genbank	54_36p	+1	provisional	missense	c.2120	p.C707Y	0.099	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_stop_codon
GNAI3	2773	genome.wustl.edu	36	1	109926612	109926612	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	109926612	109926612	G	T	SNP	GNAI3	NM_006496	human	genbank	54_36p	+1	validated	missense	c.492	p.Q164H	0.995	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors
ENSG00000208615	0	genome.wustl.edu	36	2	114755191	114755191	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	2	114755191	114755191	C	A	SNP	ENSG00000208615	ENST00000385880	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.014	-	-	-	pseudogene
HMBS	3145	genome.wustl.edu	36	11	118465912	118465912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	11	118465912	118465912	G	A	SNP	HMBS	NM_000190	human	genbank	54_36p	+1	reviewed	missense	c.347	p.R116Q	1.000	superfamily_Periplasmic binding protein-like II,HMMPfam_Porphobil_deam	superfamily_Periplasmic binding protein-like II,HMMPfam_Porphobil_deam,superfamily_Porphobilinogen deaminase (hydroxymethylbilane synthase) C-terminal domain,HMMPfam_Porphobil_deamC,PatternScan_PORPHOBILINOGEN_DEAM	-	no_errors
VNN2	8875	genome.wustl.edu	36	6	133114280	133114280	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	6	133114280	133114280	A	G	SNP	VNN2	NM_004665	human	genbank	54_36p	-1	reviewed	silent	c.897	p.L299	0.011	superfamily_Ntlse/CNhydtse	superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase	-	no_errors
TMEM71	137835	genome.wustl.edu	36	8	133833383	133833383	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	8	133833383	133833383	G	A	SNP	TMEM71	NM_144649	human	genbank	54_36p	-1	validated	silent	c.144	p.C48	0.997	NULL	NULL	-	no_errors
COL5A1	1289	genome.wustl.edu	36	9	136866782	136866782	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	9	136866782	136866782	G	T	SNP	COL5A1	NM_000093	human	genbank	54_36p	+1	reviewed	missense	c.5281	p.D1761Y	1.000	HMMSmart_COLFI,HMMPfam_COLFI	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
PCDHA4	56144	genome.wustl.edu	36	5	140167687	140167687	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	5	140167687	140167687	G	A	SNP	PCDHA4	NM_018907	human	genbank	54_36p	+1	reviewed	missense	c.731	p.R244K	0.107	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHB17	54661	genome.wustl.edu	36	5	140518069	140518069	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	5	140518069	140518069	G	A	SNP	PCDHB17	NR_001280	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC100128176	100128176	genome.wustl.edu	36	6	149327528	149327528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	6	149327528	149327528	C	T	SNP	LOC100128176	XM_001718081	human	genbank	54_36p	-1	model	missense	c.644	p.R215Q	0.000	NULL	NULL	-	no_errors
OPN1LW	5956	genome.wustl.edu	36	X	153075070	153075070	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	X	153075070	153075070	C	A	SNP	OPN1LW	NM_020061	human	genbank	54_36p	+1	reviewed	nonsense	c.852	p.Y284*	0.983	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-	no_errors
DPM3	54344	genome.wustl.edu	36	1	153379116	153379116	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	153379116	153379116	C	T	SNP	DPM3	NM_018973	human	genbank	54_36p	-1	reviewed	silent	c.315	p.Q105	0.860	HMMPfam_DPM3	HMMPfam_DPM3	-	no_errors
P2RY1	5028	genome.wustl.edu	36	3	154037241	154037241	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	3	154037241	154037241	C	T	SNP	P2RY1	NM_002563	human	genbank	54_36p	+1	reviewed	missense	c.980	p.A327V	0.999	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR6K6	128371	genome.wustl.edu	36	1	156991517	156991517	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	156991517	156991517	C	T	SNP	OR6K6	NM_001005184	human	genbank	54_36p	+1	provisional	silent	c.288	p.F96	0.898	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PLG	5340	genome.wustl.edu	36	6	161059748	161059748	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	6	161059748	161059748	C	A	SNP	PLG	NM_000301	human	genbank	54_36p	+1	validated	missense	c.984	p.D328E	1.000	HMMSmart_KR,superfamily_Kringle-like,HMMPfam_Kringle,PatternScan_KRINGLE_1	HMMPfam_PAN_1,superfamily_SSF57414,HMMSmart_PAN_AP,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
NUF2	83540	genome.wustl.edu	36	1	161584228	161584228	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	161584228	161584228	T	C	SNP	NUF2	NM_031423	human	genbank	54_36p	+1	reviewed	silent	c.1000	p.L334	0.945	NULL	HMMPfam_Nuf2	-	no_errors
ADAM29	11086	genome.wustl.edu	36	4	176135658	176135658	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	176135658	176135658	C	A	SNP	ADAM29	NM_014269	human	genbank	54_36p	+1	reviewed	missense	c.2407	p.Q803K	0.036	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors
FAM149A	25854	genome.wustl.edu	36	4	187323534	187323534	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	187323534	187323534	G	A	SNP	FAM149A	ENST00000356371	human	ensembl	54_36p	+1	known	missense	c.1087	p.V363I	0.000	NULL	NULL	-	no_errors
LOC728615	728615	genome.wustl.edu	36	1	220709304	220709304	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	220709304	220709304	C	T	SNP	LOC728615	XR_042338	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TARBP1	6894	genome.wustl.edu	36	1	232631922	232631922	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	232631922	232631922	T	A	SNP	TARBP1	NM_005646	human	genbank	54_36p	-1	reviewed	missense	c.2734	p.S912C	0.000	NULL	superfamily_ARM-type_fold,superfamily_SSF75217,HMMPfam_SpoU_methylase	-	no_errors
SH3BP4	23677	genome.wustl.edu	36	2	235626052	235626052	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	2	235626052	235626052	G	A	SNP	SH3BP4	NM_014521	human	genbank	54_36p	+1	reviewed	silent	c.2586	p.E862	1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
STXBP2	6813	genome.wustl.edu	36	19	7611300	7611301	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	19	7611300	7611301	-	TG	INS	STXBP2	ENST00000320400	human	ensembl	54_36p	+1	known	frame_shift_ins	c.492_493	p.C165fs	0.011:0.022	PatternScan_VWFC_1	PatternScan_VWFC_1,HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins,PatternScan_ZINC_FINGER_C2H2_1	-	no_start_codon
SLC34A2	10568	genome.wustl.edu	36	4	25287246	25287251	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	GCTGCT	GCTGCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	25287246	25287251	GCTGCT	-	DEL	SLC34A2	NM_006424	human	genbank	54_36p	+1	validated	in_frame_del	c.1850_1855	p.CC621in_frame_del	0.453:0.606:0.986:1.000:1.000:1.000	NULL	HMMPfam_Na_Pi_cotrans	(deletion:cds_exon[25286855,25287469])	no_errors
SERINC2	347735	genome.wustl.edu	36	1	31678476	31678477	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	31678476	31678477	-	CAG	INS	SERINC2	NM_178865	human	genbank	54_36p	+1	validated	in_frame_ins	c.1089_1090	p.367in_frame_insQ	0.300:0.539	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors
KIAA1219	57148	genome.wustl.edu	36	20	36601885	36601886	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	GC	GC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	20	36601885	36601886	GC	-	DEL	KIAA1219	NM_020336	human	genbank	54_36p	+1	validated	frame_shift_del	c.2432_2433	p.C811fs	1.000:1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145)	(deletion:cds_exon[36601833,36602015])	no_errors
FGD1	2245	genome.wustl.edu	36	X	54492335	54492354	+	Frame_Shift_Del	DEL	GTGATAGAATTGAAGGGCTC	GTGATAGAATTGAAGGGCTC	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	GTGATAGAATTGAAGGGCTC	GTGATAGAATTGAAGGGCTC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	X	54492335	54492354	GTGATAGAATTGAAGGGCTC	-	DEL	FGD1	NM_004463	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2240_2221	p.E741fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE	PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE	(deletion:cds_exon[54492301,54492426])	no_errors
FAM13AOS	285512	genome.wustl.edu	36	4	89868434	89868435	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	TG	TG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	89868434	89868435	TG	-	DEL	FAM13AOS	NR_002806	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.000:0.000	-	-	(deletion:rna[89868009,89870277])	no_errors
STAG3	10734	genome.wustl.edu	36	7	99659775	99659780	+	Frame_Shift_Del	DEL	TTTTTT	TTTTTT	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	TTTTTT	TTTTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	7	99659775	99659780	TTTTTT	-	DEL	STAG3	ENST00000394018	human	ensembl	54_36p	+1	known	frame_shift_del	c.3672_3675	p.D1224fs	0.113:0.101:0.089:0.076	NULL	superfamily_ARM repeat,HMMPfam_STAG	(deletion:cds_exon[99659773,99659778], flank[99659779,99709778])	no_stop_codon
CASP6	839	genome.wustl.edu	36	4	110835165	110835166	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	TG	TG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	4	110835165	110835166	TG	-	DEL	CASP6	NM_001226	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.448_447	p.H149fs	1.000:0.995	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	(deletion:cds_exon[110835130,110835305])	no_errors
C9orf91	203197	genome.wustl.edu	36	9	116430344	116430346	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	AGA	AGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	9	116430344	116430346	AGA	-	DEL	C9orf91	NM_153045	human	genbank	54_36p	+1	validated	in_frame_del	c.467_469	p.K158in_frame_del	1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[116430202,116430351])	no_errors
LOC100128411	0	genome.wustl.edu	36	2	128110715	128110726	+	In_Frame_Del	DEL	CAGGGACCTGTG	CAGGGACCTGTG	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	CAGGGACCTGTG	CAGGGACCTGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	2	128110715	128110726	CAGGGACCTGTG	-	DEL	LOC100128411	XM_001717246	human	genbank	54_36p	-1	model	in_frame_del	c.31_20	p.AQVP7in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.011:0.000:0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[128110611,128110745])	no_errors
LOC729374	729374	genome.wustl.edu	36	1	149796474	149796481	+	RNA	DEL	AATCATCA	AATCATCA	-	novel	unknown	TCGA-29-1702-01A-01W-0633-09	TCGA-29-1702-10A-01W-0633-09	AATCATCA	AATCATCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	dc477882-35a0-48b5-adae-bef3daa66a7e	32415507-e658-47c9-aa9e-bc901ed7d972	1	149796474	149796481	AATCATCA	-	DEL	LOC729374	XR_015991	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.034:0.023:0.010:0.007:0.005:0.009:0.013:0.033	-	-	(deletion:rna[149795934,149797102])	pseudogene
