Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
EIF3S9	8662	genome.wustl.edu	36	7	2386554	2386554	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	7	2386554	2386554	G	A	SNP	EIF3S9	ENST00000314800	human	ensembl	54_36p	+1	known	missense	c.2570	p.R857Q	0.613	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_eIF2A	-	no_errors
CREBBP	1387	genome.wustl.edu	36	16	3783434	3783434	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	16	3783434	3783434	G	C	SNP	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	missense	c.1170	p.N390K	0.990	superfamily_TAZ_finger,HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ	superfamily_TAZ_finger,HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,HMMPfam_KIX,superfamily_KIX,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,HMMPfam_DUF902,HMMPfam_DUF906,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Creb_binding,superfamily_Nuc_recept_coact	-	no_errors
PTPRS	5802	genome.wustl.edu	36	19	5237106	5237106	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	19	5237106	5237106	T	C	SNP	PTPRS	NM_002850	human	genbank	54_36p	-1	reviewed	missense	c.46	p.M16V	0.159	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520083	7520083	+	Missense_Mutation	SNP	C	C	A	rs11540654	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	17	7520083	7520083	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.329	p.R110L	0.018	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
DENND5A	23258	genome.wustl.edu	36	11	9156341	9156341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	11	9156341	9156341	C	T	SNP	DENND5A	NM_015213	human	genbank	54_36p	-1	validated	missense	c.1820	p.R607Q	1.000	NULL	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_RUN,HMMSmart_SM00593,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT	-	no_errors
PRAMEF1	65121	genome.wustl.edu	36	1	12778699	12778699	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	1	12778699	12778699	G	A	SNP	PRAMEF1	NM_023013	human	genbank	54_36p	+1	provisional	silent	c.1392	p.P464	0.000	NULL	superfamily_SSF52047	-	no_errors
PRAMEF2	65122	genome.wustl.edu	36	1	12844188	12844188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	1	12844188	12844188	G	A	SNP	PRAMEF2	NM_023014	human	genbank	54_36p	+1	provisional	silent	c.1392	p.P464	0.000	NULL	superfamily_SSF52047	-	no_errors
TRDMT1	1787	genome.wustl.edu	36	10	17241177	17241177	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	10	17241177	17241177	G	A	SNP	TRDMT1	NM_004412	human	genbank	54_36p	-1	reviewed	missense	c.517	p.P173S	0.779	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_2	-	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19783727	19783727	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	18	19783727	19783727	A	G	SNP	LAMA3	NM_198129	human	genbank	54_36p	+1	reviewed	missense	c.9352	p.S3118G	0.989	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_CHAPERONINS_CPN60	-	no_errors
HTATIP2	10553	genome.wustl.edu	36	11	20342378	20342378	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	11	20342378	20342378	C	A	SNP	HTATIP2	NM_001098520	human	genbank	54_36p	+1	validated	missense	c.121	p.L41M	0.513	NULL	superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
LOC256223	256223	genome.wustl.edu	36	17	20423821	20423821	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	17	20423821	20423821	G	A	SNP	LOC256223	XM_170840	human	genbank	54_36p	+1	model	nonsense	c.99	p.W33*	0.000	NULL	NULL	-	no_errors
HIST1H2AD	3013	genome.wustl.edu	36	6	26307340	26307340	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	6	26307340	26307340	C	T	SNP	HIST1H2AD	NM_021065	human	genbank	54_36p	-1	reviewed	silent	c.111	p.K37	1.000	superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors
TIAM1	7074	genome.wustl.edu	36	21	31539812	31539812	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	21	31539812	31539812	A	C	SNP	TIAM1	NM_003253	human	genbank	54_36p	-1	validated	missense	c.1447	p.S483A	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_RBD,HMMSmart_RBD,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1	-	no_errors
C20orf117	140710	genome.wustl.edu	36	20	34867692	34867692	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	20	34867692	34867692	C	G	SNP	C20orf117	NM_199181	human	genbank	54_36p	-1	predicted	missense	c.2183	p.G728A	0.972	NULL	NULL	-	no_errors
FGD2	221472	genome.wustl.edu	36	6	37087600	37087600	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	6	37087600	37087600	G	C	SNP	FGD2	NM_173558	human	genbank	54_36p	+1	validated	silent	c.519	p.L173	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
LRFN2	57497	genome.wustl.edu	36	6	40508018	40508018	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	6	40508018	40508018	G	T	SNP	LRFN2	NM_020737	human	genbank	54_36p	-1	provisional	silent	c.813	p.L271	0.995	superfamily_L domain-like,HMMSmart_SM00082	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
ZNF295	49854	genome.wustl.edu	36	21	42284523	42284523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	21	42284523	42284523	C	T	SNP	ZNF295	NM_001098402	human	genbank	54_36p	-1	validated	missense	c.2751	p.M917I	0.986	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LRPPRC	10128	genome.wustl.edu	36	2	44028779	44028779	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	2	44028779	44028779	G	C	SNP	LRPPRC	NM_133259	human	genbank	54_36p	-1	reviewed	missense	c.1906	p.P636A	1.000	NULL	superfamily_SSF48452,HMMPfam_PPR	-	no_errors
ADARB1	104	genome.wustl.edu	36	21	45420911	45420911	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	21	45420911	45420911	G	A	SNP	ADARB1	NM_015833	human	genbank	54_36p	+1	reviewed	silent	c.867	p.A289	0.307	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,HMMPfam_A_deamin,superfamily_Cytokine	-	no_errors
TUBGCP6	85378	genome.wustl.edu	36	22	49005133	49005133	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	22	49005133	49005133	T	C	SNP	TUBGCP6	NM_020461	human	genbank	54_36p	-1	reviewed	missense	c.1999	p.I667V	1.000	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
PPP1R3F	89801	genome.wustl.edu	36	X	49030064	49030064	+	Silent	SNP	T	C	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	X	49030064	49030064	T	C	SNP	PPP1R3F	NM_033215	human	genbank	54_36p	+1	validated	silent	c.1968	p.N656	0.004	NULL	HMMPfam_CBM_21	-	no_errors
ZNF283	284349	genome.wustl.edu	36	19	49044324	49044324	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	19	49044324	49044324	G	A	SNP	ZNF283	NM_181845	human	genbank	54_36p	+1	validated	silent	c.1731	p.G577	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GLDN	342035	genome.wustl.edu	36	15	49463356	49463356	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	15	49463356	49463356	A	G	SNP	GLDN	NM_181789	human	genbank	54_36p	+1	validated	silent	c.516	p.G172	0.997	HMMPfam_Collagen	HMMPfam_Collagen,HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
SALL1	6299	genome.wustl.edu	36	16	49730950	49730950	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	16	49730950	49730950	C	A	SNP	SALL1	NM_002968	human	genbank	54_36p	-1	reviewed	missense	c.2684	p.G895V	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SULT2B1	6820	genome.wustl.edu	36	19	53770986	53770986	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	19	53770986	53770986	G	T	SNP	SULT2B1	NM_004605	human	genbank	54_36p	+1	reviewed	missense	c.3	p.M1I	0.001	NULL	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	-	no_errors
POLR2B	5431	genome.wustl.edu	36	4	57566337	57566337	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	4	57566337	57566337	T	A	SNP	POLR2B	NM_000938	human	genbank	54_36p	+1	reviewed	missense	c.1069	p.C357S	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors
SERPINB4	6318	genome.wustl.edu	36	18	59461684	59461684	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	18	59461684	59461684	T	C	SNP	SERPINB4	NM_002974	human	genbank	54_36p	-1	validated	silent	c.108	p.S36	0.659	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
PLEKHM1P	0	genome.wustl.edu	36	17	60227409	60227409	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	17	60227409	60227409	C	G	SNP	PLEKHM1P	ENST00000290422	human	ensembl	54_36p	-1	known	missense	c.93	p.E31D	1.000	superfamily_PH domain-like,HMMSmart_SM00233	superfamily_PH domain-like,HMMSmart_SM00233,HMMSmart_SM00109	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62057859	62057859	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	11	62057859	62057859	C	G	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	silent	c.606	p.G202	0.932	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors
CYP1A1	1543	genome.wustl.edu	36	15	72802433	72802433	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	15	72802433	72802433	C	A	SNP	CYP1A1	NM_000499	human	genbank	54_36p	-1	reviewed	missense	c.59	p.C20F	1.000	NULL	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
EDIL3	10085	genome.wustl.edu	36	5	83275118	83275118	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	5	83275118	83275118	T	C	SNP	EDIL3	NM_005711	human	genbank	54_36p	-1	reviewed	missense	c.1319	p.D440G	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
IGKC	3514	genome.wustl.edu	36	2	89197989	89197989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	2	89197989	89197989	C	T	SNP	IGKC	ENST00000390254	human	ensembl	54_36p	-1	known	missense	c.310	p.D104N	1.000	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
CRADD	8738	genome.wustl.edu	36	12	92596771	92596771	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	12	92596771	92596771	C	G	SNP	CRADD	NM_003805	human	genbank	54_36p	+1	reviewed	silent	c.90	p.L30	0.969	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,HMMSmart_SM00005,HMMPfam_Death,PatternScan_IG_MHC	-	no_errors
RCOR1	23186	genome.wustl.edu	36	14	102258422	102258422	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	14	102258422	102258422	T	G	SNP	RCOR1	NM_015156	human	genbank	54_36p	+1	validated	silent	c.1326	p.G442	0.779	NULL	HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
FGF8	2253	genome.wustl.edu	36	10	103520230	103520230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	10	103520230	103520230	G	A	SNP	FGF8	NM_033163	human	genbank	54_36p	-1	reviewed	missense	c.581	p.T194M	1.000	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
ORC5L	5001	genome.wustl.edu	36	7	103588840	103588840	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	7	103588840	103588840	T	C	SNP	ORC5L	NM_002553	human	genbank	54_36p	-1	reviewed	silent	c.1065	p.K355	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZNF80	7634	genome.wustl.edu	36	3	115438288	115438288	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	3	115438288	115438288	C	T	SNP	ZNF80	NM_007136	human	genbank	54_36p	-1	validated	silent	c.324	p.V108	0.000	superfamily_SSF57667,HMMSmart_ZnF_C2H2	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DPP10	57628	genome.wustl.edu	36	2	116265358	116265358	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	2	116265358	116265358	C	G	SNP	DPP10	NM_020868	human	genbank	54_36p	+1	reviewed	silent	c.1656	p.P552	1.000	superfamily_alpha/beta-Hydrolases	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors
FAM72B	653820	genome.wustl.edu	36	1	120647610	120647610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	1	120647610	120647610	C	T	SNP	FAM72B	NM_001100910	human	genbank	54_36p	+1	predicted	missense	c.323	p.A108V	1.000	NULL	NULL	-	no_errors
ZHX2	22882	genome.wustl.edu	36	8	124034613	124034613	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	8	124034613	124034613	G	A	SNP	ZHX2	NM_014943	human	genbank	54_36p	+1	reviewed	missense	c.1682	p.R561Q	0.046	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	PatternScan_ZINC_FINGER_C2H2_1,PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
OSBPL11	114885	genome.wustl.edu	36	3	126733498	126733498	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	3	126733498	126733498	T	C	SNP	OSBPL11	NM_022776	human	genbank	54_36p	-1	reviewed	missense	c.2075	p.K692R	0.421	HMMPfam_Oxysterol_BP	superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
GAPVD1	26130	genome.wustl.edu	36	9	127107193	127107193	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	9	127107193	127107193	A	G	SNP	GAPVD1	NM_015635	human	genbank	54_36p	+1	validated	missense	c.1060	p.T354A	1.000	superfamily_Rho_GAP	superfamily_Rho_GAP,HMMPfam_RasGAP,superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9	-	no_errors
BIN1	274	genome.wustl.edu	36	2	127544115	127544115	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	2	127544115	127544115	C	G	SNP	BIN1	NM_139343	human	genbank	54_36p	-1	reviewed	missense	c.337	p.D113H	1.000	HMMSmart_SM00721,HMMPfam_BAR	HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
ADAM12	8038	genome.wustl.edu	36	10	127714738	127714738	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	10	127714738	127714738	G	T	SNP	ADAM12	NM_003474	human	genbank	54_36p	-1	reviewed	silent	c.2505	p.P835	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2"	-	no_errors
EXOC4	60412	genome.wustl.edu	36	7	133399816	133399816	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	7	133399816	133399816	G	A	SNP	EXOC4	NM_021807	human	genbank	54_36p	+1	reviewed	missense	c.2920	p.V974I	0.990	NULL	HMMPfam_Sec8_exocyst,PatternScan_DEAH_ATP_HELICASE	-	no_errors
GTF3C4	9329	genome.wustl.edu	36	9	134544826	134544826	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	9	134544826	134544826	G	A	SNP	GTF3C4	NM_012204	human	genbank	54_36p	+1	validated	missense	c.1999	p.E667K	1.000	NULL	NULL	-	no_errors
EPPK1	83481	genome.wustl.edu	36	8	145015184	145015184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	8	145015184	145015184	C	T	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	missense	c.4151	p.R1384Q	0.001	superfamily_Plakin repeat,HMMSmart_SM00250	HMMSmart_SM00250,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_stop_codon:bad_bp_length_for_coding_region
IKBKE	9641	genome.wustl.edu	36	1	204733252	204733252	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	1	204733252	204733252	C	T	SNP	IKBKE	NM_014002	human	genbank	54_36p	+1	validated	nonsense	c.1963	p.Q655*	0.429	NULL	PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
CD46	4179	genome.wustl.edu	36	1	205996982	205996982	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	1	205996982	205996982	A	G	SNP	CD46	NM_172359	human	genbank	54_36p	+1	reviewed	missense	c.98	p.D33G	0.997	NULL	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
MFF	56947	genome.wustl.edu	36	2	227913268	227913268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	2	227913268	227913268	G	A	SNP	MFF	NM_020194	human	genbank	54_36p	+1	provisional	missense	c.446	p.R149K	1.000	HMMPfam_DUF800	HMMPfam_DUF800	-	no_errors
PASK	23178	genome.wustl.edu	36	2	241725176	241725176	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	2	241725176	241725176	G	C	SNP	PASK	NM_015148	human	genbank	54_36p	-1	validated	silent	c.1053	p.L351	0.945	HMMSmart_SM00091	HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TRIM22	10346	genome.wustl.edu	36	11	5674265	5674301	+	Frame_Shift_Del	DEL	ACATAGTTGAGAGAGTCAAAGAGGTCAAGATGAGCCC	ACATAGTTGAGAGAGTCAAAGAGGTCAAGATGAGCCC	-	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	ACATAGTTGAGAGAGTCAAAGAGGTCAAGATGAGCCC	ACATAGTTGAGAGAGTCAAAGAGGTCAAGATGAGCCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	11	5674265	5674301	ACATAGTTGAGAGAGTCAAAGAGGTCAAGATGAGCCC	-	DEL	TRIM22	NM_006074	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.227_263	p.I77fs	0.043:0.018:0.013:0.012:0.001:0.001:0.001:0.000:0.000:0.002:0.007:0.008:0.003:0.000:0.000:0.001:0.002:0.001:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.022:0.019:0.116:0.130:0.129:0.075	superfamily_RING/U-box	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	(deletion:cds_exon[5674039,5674461])	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19672784	19672787	+	Frame_Shift_Del	DEL	GTAT	GTAT	-	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	GTAT	GTAT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	18	19672784	19672787	GTAT	-	DEL	LAMA3	NM_198129	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.3135_3138	p.Y1046fs	1.000:1.000:1.000:0.991	NULL	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_CHAPERONINS_CPN60	(deletion:cds_exon[19672743,19672840])	no_errors
FGD2	221472	genome.wustl.edu	36	6	37087608	37087612	+	Frame_Shift_Del	DEL	GGTGA	GGTGA	-	novel	unknown	TCGA-29-1705-01A-01W-0633-09	TCGA-29-1705-10A-01W-0633-09	GGTGA	GGTGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d8379cd3-78f6-478c-a4bc-d4b3e72aa01c	7ed7a0dc-81fa-498f-b03c-a39217bdf5b3	6	37087608	37087612	GGTGA	-	DEL	FGD2	NM_173558	human	genbank	54_36p	+1	validated	frame_shift_del	c.527	p.W176fs	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	(deletion:cds_exon[37087460,37087608], intron[37087609,37089362])	no_errors
